View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6883_high_6 (Length: 502)

Name: NF6883_high_6
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6883_high_6
NF6883_high_6
[»] chr6 (15 HSPs)
chr6 (10-487)||(1888003-1888493)
chr6 (100-478)||(1880716-1881090)
chr6 (347-478)||(1892860-1892991)
chr6 (83-219)||(1898833-1898969)
chr6 (347-473)||(1898194-1898320)
chr6 (99-268)||(1903989-1904158)
chr6 (99-268)||(1908222-1908391)
chr6 (346-487)||(1913555-1913696)
chr6 (100-272)||(1914098-1914270)
chr6 (101-216)||(1893124-1893239)
chr6 (348-468)||(1903499-1903619)
chr6 (348-468)||(1907732-1907852)
chr6 (63-108)||(1881369-1881414)
chr6 (19-65)||(1881428-1881474)
chr6 (117-237)||(1919119-1919239)


Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 10 - 487
Target Start/End: Complemental strand, 1888493 - 1888003
Alignment:
Q  10 attatactatagaaagaaatgcacaaattaatgattatcaacaaccatatcattaa-------------aaattagcaagaacaatgccaagaatccaat 96  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||             |||||||||||||||||||||||||||||||    
T  1888493 attatactatagaaagaaatgcacaaattaatgattctcaacaaccatgtcattaagttggaacaataaaaattagcaagaacaatgccaagaatccaat 1888394  T
Q  97 tcaaaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgat 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1888393 tcaaaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgat 1888294  T
Q  197 gttacatagacagctccctttaaacgcattgaccatgcataaaccatattccctattaattttcccaaaattccctataaaaattaaataaatgtatata 296  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1888293 gttacatagacagctccctttaaacgcattgaccatgcataaactatattccctattaattttcccaaaattccctataaaaattaaataaatgtatata 1888194  T
Q  297 aataagaggtgtaaaattttttgtcgtagtgaagcaatatggtttgaaatgtatcttacggaagaaacaatggagatgagtgagagatttagtcctattt 396  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1888193 aataagaggtgtaaaatcttttgtcgtagtgaagcaatatggtttgaaatgtatcttacggaagaaacaatggagatgagtgagagatttagtcctattt 1888094  T
Q  397 tccaagcacttgcatttggaactgataacaatgctacagctgttgataagatggtggcagtaatggagtaaagcaagactaatgttggttc 487  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1888093 tccaagcacttgcatttggaactgataacaatgctacaactgttgataagatggtggcagtaatggagtaaagcaagactaatgttggttc 1888003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 100 - 478
Target Start/End: Complemental strand, 1881090 - 1880716
Alignment:
Q  100 aaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgtt 199  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||  |||||||||||||||||||||||||||    
T  1881090 aaaattgaataaaccataccttccaacatgaagagtatcaccaaggaatataacagccaaggcaacagaaaacacaatttggagtggcttgaatgatgtt 1880991  T
Q  200 acatagacagctccctttaaacgcattgaccatgcataaaccatattccctattaattttcccaaaattccctataaaaattaaataaatgtatataaat 299  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||| | | |||||||||||| ||||| ||||| ||     | |||||||| |  || |    
T  1880990 acatagacagctccctttaagcgcaatgaccatgcataaactatactgcttattaattttccaaaaatcccctagaa-----atataaatgtgtcaaatt 1880896  T
Q  300 aagaggtgtaaaattttttgtcgtagtgaagcaata-tggtttgaaatgtatcttacggaagaaacaatggagatgagtgagagatttagtcctattttc 398  Q
    ||||| |||||| || ||||    |||  ||||||| |  ||| || |||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  1880895 aagagctgtaaatttatttggtcaagtacagcaatagtactttcaagtgtatcttacagaagaaactatagagatgagtgagagatttagtcctattttc 1880796  T
Q  399 caagcacttgcatttggaactgataacaatgctacagctgttgataagatggtggcagtaatggagtaaagcaagactaa 478  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| |||| ||| | |||||||||    
T  1880795 caagcacttgcatttggaactgataacaatgctacaactgttgatatgatggtagcagttatggtgtataacaagactaa 1880716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 347 - 478
Target Start/End: Complemental strand, 1892991 - 1892860
Alignment:
Q  347 gtatcttacggaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacagctgttgataag 446  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  1892991 gtatcttacagaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaactgttgatatg 1892892  T
Q  447 atggtggcagtaatggagtaaagcaagactaa 478  Q
    |||||||||||||||| ||| | |||||||||    
T  1892891 atggtggcagtaatggtgtataacaagactaa 1892860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 1898969 - 1898833
Alignment:
Q  83 gccaagaatccaattcaaaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttgga 182  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||  ||| || |||||||||||||||| |    
T  1898969 gccaagaatcaaatgcaaaaattgaatttactataccttccaacatgaagagtatcaccaagaaacataacacctaagccagcagaaataacaatttgaa 1898870  T
Q  183 gtggcttgaatgatgttacatagacagctccctttaa 219  Q
    ||||||||||||| ||||||||||| || ||||||||    
T  1898869 gtggcttgaatgaggttacatagactgccccctttaa 1898833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 347 - 473
Target Start/End: Complemental strand, 1898320 - 1898194
Alignment:
Q  347 gtatcttacggaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacagctgttgataag 446  Q
    ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || | |||| |    
T  1898320 gtatcttacagaagaaacaatggagataagtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctacaactatagatatg 1898221  T
Q  447 atggtggcagtaatggagtaaagcaag 473  Q
    |||||||||||  ||| ||||||||||    
T  1898220 atggtggcagttgtggtgtaaagcaag 1898194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 99 - 268
Target Start/End: Complemental strand, 1904158 - 1903989
Alignment:
Q  99 aaaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgt 198  Q
    ||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||| |||||||||||||| ||    
T  1904158 aaaaattcaaataaccataccttccaacatgaagagtatcaccaaggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggt 1904059  T
Q  199 tacatagacagctccctttaaacgcattgaccatgcataaaccatattccctattaattttcccaaaatt 268  Q
    ||||||||| || |||||||| || |  ||||| ||| ||||  |||| ||||| || ||||| ||||||    
T  1904058 tacatagactgccccctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaatt 1903989  T

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Target: chr6; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 99 - 268
Target Start/End: Complemental strand, 1908391 - 1908222
Alignment:
Q  99 aaaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgt 198  Q
    ||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||| |||||||||||||| ||    
T  1908391 aaaaattcaaataaccataccttccaacatgaagagtatcaccaaggaatataacacccaagccagcagaaataacaatttgaagtggcttgaatgaggt 1908292  T
Q  199 tacatagacagctccctttaaacgcattgaccatgcataaaccatattccctattaattttcccaaaatt 268  Q
    ||||||||| || |||||||| || |  ||||| ||| ||||  |||| ||||| || ||||| ||||||    
T  1908291 tacatagactgccccctttaaccgaacagaccaggcacaaactgtattgcctatcaactttccgaaaatt 1908222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 346 - 487
Target Start/End: Complemental strand, 1913696 - 1913555
Alignment:
Q  346 tgtatcttacggaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacagctgttgataa 445  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||| |||| ||||     
T  1913696 tgtatcttacagaagaaacaatggagataagtgagagatttagtcctattatccaagcacttgaatttggaactgataacaaagctacaactgtagatat 1913597  T
Q  446 gatggtggcagtaatggagtaaagcaagactaatgttggttc 487  Q
    ||| |||||||| ||||| || | ||||||||| ||| ||||    
T  1913596 gattgtggcagttatggaatatatcaagactaaagttagttc 1913555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 100 - 272
Target Start/End: Complemental strand, 1914270 - 1914098
Alignment:
Q  100 aaaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgtt 199  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||   |||||| ||||||||||| |||||||||||||| |||    
T  1914270 aaaattgaattaaccataccttccaagatgaagagtatcaccaaggaatataactcccaaccaaacagagataacaatttgcagtggcttgaatgaggtt 1914171  T
Q  200 acatagacagctccctttaaacgcattgaccatgcataaaccatattccctattaattttcccaaaattccct 272  Q
    ||||||||||| ||||||||  | |||| ||| ||| |||| || || || ||||| || || ||||||||||    
T  1914170 acatagacagccccctttaagtgtattgcccaggcagaaactatgttaccgattaacttcccgaaaattccct 1914098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 1893239 - 1893124
Alignment:
Q  101 aaattgaattaactataccttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgtta 200  Q
    ||||| ||||||| ||||||||||| ||||||| ||||||||||||||||||| |  ||| ||||||||||||||||||| || ||||||||||| ||||    
T  1893239 aaattaaattaaccataccttccaatatgaagaatatcaccaaggaatataactcctaagccaacagaaataacaatttgtagaggcttgaatgaggtta 1893140  T
Q  201 catagacagctccctt 216  Q
    |||||||||| |||||    
T  1893139 catagacagccccctt 1893124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 348 - 468
Target Start/End: Complemental strand, 1903619 - 1903499
Alignment:
Q  348 tatcttacggaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacagctgttgataaga 447  Q
    |||||||| ||| |||||| ||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||||| |||||| || | |||| ||    
T  1903619 tatcttacagaacaaacaacggagacgagtgagagattcaatcctattttccaagcacttgcttttggaactgataacaaagctacaactatagatatga 1903520  T
Q  448 tggtggcagtaatggagtaaa 468  Q
    ||||||||||  |||||||||    
T  1903519 tggtggcagttgtggagtaaa 1903499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 348 - 468
Target Start/End: Complemental strand, 1907852 - 1907732
Alignment:
Q  348 tatcttacggaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacagctgttgataaga 447  Q
    |||||||| ||| |||||| ||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||||| |||||| || | |||| ||    
T  1907852 tatcttacagaacaaacaacggagacgagtgagagattcaatcctattttccaagcacttgcttttggaactgataacaaagctacaactatagatatga 1907753  T
Q  448 tggtggcagtaatggagtaaa 468  Q
    ||||||||||  |||||||||    
T  1907752 tggtggcagttgtggagtaaa 1907732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 1881414 - 1881369
Alignment:
Q  63 taaaaattagcaagaacaatgccaagaatccaattcaaaaattgaa 108  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  1881414 taaaaattagcaagaacaatgccaaaaatccaattcaaatattgaa 1881369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 1881474 - 1881428
Alignment:
Q  19 tagaaagaaatgcacaaattaatgattatcaacaaccatatcattaa 65  Q
    ||||||||||| ||||||||||||||| ||||||||||||| |||||    
T  1881474 tagaaagaaatacacaaattaatgattgtcaacaaccatatgattaa 1881428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 1919239 - 1919119
Alignment:
Q  117 accttccaacatgaagagtatcaccaaggaatataacactcaaggcaacagaaataacaatttggagtggcttgaatgatgttacatagacagctccctt 216  Q
    ||||||||| ||||||||||||||||||||| | || || ||  ||||||| ||||||||||   |||||||||||   |||| |||| ||||  |||||    
T  1919239 accttccaatatgaagagtatcaccaaggaacaaaatacccatagcaacagcaataacaattgaaagtggcttgaacattgttgcatatacaggaccctt 1919140  T
Q  217 taaacgcattgaccatgcata 237  Q
    |||| | |||| ||| |||||    
T  1919139 taaatgtattgcccaagcata 1919119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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