View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6883_low_11 (Length: 319)
Name: NF6883_low_11
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6883_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 21 - 305
Target Start/End: Complemental strand, 31561161 - 31560878
Alignment:
| Q |
21 |
gtacataggttgaagatagattctcgacagtgaatatcgtcttttgttggagggctgtaactgatattgagtaattgacactgccaaaatccagtaatga |
120 |
Q |
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| T |
31561161 |
gtacataggttgaagatagattctcgacagtgaatatcgtcttttgttggagggctgtaactgatattgagtaattgacactgccaaaatccagtaatga |
31561062 |
T |
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| Q |
121 |
cggagaaaaaataaagcaaggacaaatataattcaagaacagaaagccgattcaattatctacggagatacaattgacataagttgaaaaatgtgtccta |
220 |
Q |
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| T |
31561061 |
cggagaaaaaa-aaagcaaggacaaatataattcaagaacagaaagccgattcaattatctacggagatacaattgacataagttgaaaaatgtgtccta |
31560963 |
T |
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| Q |
221 |
aaaatatatatgtatcttgaacaatgatacaaccaaattctatattattcttgttcatttccttctccttctatagtactttata |
305 |
Q |
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| T |
31560962 |
aaaatatatatgtatcttgaacaatgatacaaccaaattctatattattcttgttcatttcctactccttctatagtactttata |
31560878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 270
Target Start/End: Complemental strand, 31559175 - 31558936
Alignment:
| Q |
25 |
ataggttgaagatagattctcgacagtgaatatcgtcttttgttggagggctgtaactgatattgagtaattgacactgccaaaatccagtaatgacgga |
124 |
Q |
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| T |
31559175 |
ataggctgaggatagatccgcgacagtgaatattgtcttctgttggagggctgtaactgatatttaataatttgcacagccaaaatccagtaatgatggg |
31559076 |
T |
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| Q |
125 |
gaaaaaataaagcaaggacaaatataattcaagaacagaaagccgattcaattatctacggagatacaattgacataagttgaaaaatgtgtcctaaaaa |
224 |
Q |
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| T |
31559075 |
gaaaaa-taaag-----acaaatataattcaagaatagaaggccaattcaattatctacagagatacatttgacataaaatgaaaaatgagtcctaaaaa |
31558982 |
T |
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| Q |
225 |
tatatatgtatcttgaacaatgatacaaccaaattctatattattc |
270 |
Q |
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| T |
31558981 |
tatatatgtagcttgaacaatgatacaacctacttctatattattc |
31558936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 31877560 - 31877754
Alignment:
| Q |
21 |
gtacataggttgaagatagattctcgacagtgaatatcgtcttttgttggagggctgtaac--------tgatattgagtaattgacactgccaaaatcc |
112 |
Q |
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| T |
31877560 |
gtacataggttgaagatagtttcgcgacagtgaatatcgtcttctgttgtagggctgtaaccaatagactgatactgattaatttgcactgccaaaatcc |
31877659 |
T |
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| Q |
113 |
agtaatgacggagaaaaaataaagcaaggacaaatataattcaagaacagaaagccgattcaattatctacggagatacaattgacataagttgaaaaat |
212 |
Q |
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| T |
31877660 |
attaatgatggggaaaata-------aggacaaatataattcaagaatagaatgccaattcaattatctacggagatacaattgacataagatgaaaaat |
31877752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 31556169 - 31556020
Alignment:
| Q |
21 |
gtacataggttgaagatagattctcgacagtgaatatcgtcttttgttggagggctgtaactgatattgagtaattgacactgccaaaatccagtaatga |
120 |
Q |
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| T |
31556169 |
gtacataggctgataatagatccgcgacagtgaatattgtcttcagttggagggctgtaactgatactgattaatttgcactgccaaaatccagtaatga |
31556070 |
T |
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| Q |
121 |
cggagaaaaaataaagcaaggacaaatataattcaagaacagaaagccgattcaatt |
177 |
Q |
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| T |
31556069 |
tg--ggaaaaataaa-----gacaaatataattcaagaatagaatgccaattcaatt |
31556020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 275
Target Start/End: Complemental strand, 31556000 - 31555903
Alignment:
| Q |
170 |
attcaattatctacggagatacaattgacataagttgaaaaatgtgtcctaaaaatatatatgtatcttgaacaatgatacaaccaaattctatattatt |
269 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||||| ||||||||||||| ||||| | |||||||||||| |
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| T |
31556000 |
attcaattatctacaaagatacaattgacataa-------aatgtgttctaaaa-tatatatgtagcttgaacaatgatccaacctacttctatattatt |
31555909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 31852379 - 31852320
Alignment:
| Q |
59 |
gtcttttgttggagggctgtaactgatattgagtaattgacactgccaaaatccagtaat |
118 |
Q |
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| T |
31852379 |
gtcttctgttggagggcaataactgatattgagtaattgacactgcaaaaatccagtaat |
31852320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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