View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6883_low_12 (Length: 301)
Name: NF6883_low_12
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6883_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 13970696 - 13970421
Alignment:
| Q |
11 |
aagaacatgaaacactagacatatataattatgtaagccatatcgcagacatgataaagtagaaatcatattaccattgacgataggacttgaagtccgg |
110 |
Q |
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| T |
13970696 |
aagaacatgaaacactagacatatataattatgtaagccatatcgcagacatgataaagtagaaatcatattaccattgacgataggacttgaagtccgg |
13970597 |
T |
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| Q |
111 |
aagctcgcaaatgctctacttttccatcatctcccacttgttgcgctagatggcaaagttttaaaataaaactgtctaaattaaacatataagtaccatc |
210 |
Q |
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| T |
13970596 |
aagctcgcaaatgctctacttttccatcatctcccacttgttgcgctagatggcaaagttttaaaataaaactgtctaaattaaacatataagtaccatc |
13970497 |
T |
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| Q |
211 |
cctctgcacaaataaaagaatgatacaagatcaaacttcaatgtggaaaaacttacaatgttgtaaacatttaact |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13970496 |
cctctgcacaaataaaagaatgatacaagatcaaacttcaatgtggaaaaacttacaatgttgtcaacatttaact |
13970421 |
T |
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