View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6883_low_13 (Length: 276)
Name: NF6883_low_13
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6883_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 43659869 - 43659627
Alignment:
| Q |
20 |
gattactagctccttaaccttgacttgtatatacattgtacttcattcattattgtatattgatcaccattaaagtggaatacaattgagttaattcaga |
119 |
Q |
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| T |
43659869 |
gattactagctccttaaccttgacttgtatatacattgtacttcattcattattgtatattgatcaccattaaagtggaatacaattgagttaattcaga |
43659770 |
T |
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| Q |
120 |
actaatcagtttctcaatattcatgcatcaaattcaatagtgatgagtgtgaaggatgtatcgggaaaaaccaaagttctatgttgaaaaagataaagcc |
219 |
Q |
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| T |
43659769 |
actaatcagtttctcaatattcatgcatcaaattcaatagtgatgagtgtgagggatgtattgggaaaaaccaaagttctatgttgaaaaagataaagcc |
43659670 |
T |
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| Q |
220 |
ttaaatgaatttataaagaagttttatatattcatgttctttt |
262 |
Q |
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| T |
43659669 |
ttaaatgaatttataaagaagttttatatattcatgttctttt |
43659627 |
T |
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