View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6883_low_15 (Length: 270)
Name: NF6883_low_15
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6883_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 11442642 - 11442406
Alignment:
| Q |
16 |
ataccatcactcacccttcttggtattcaccaaaaaccggaatttacaatagtatacactctcctaggagccttccgaccgacccttttctcgacgttgt |
115 |
Q |
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| T |
11442642 |
ataccatcactcacccttcttggtattcaccaaaaaccggaatttacaatagtatacactctcctaggagccttccgaccgacccttttctcgacgttgt |
11442543 |
T |
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| Q |
116 |
atccttcattttttctcatccacatgacggggttttagcccttattgattccttatctgggacttccatttcttactcaaatttgttaactttagtcaaa |
215 |
Q |
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| T |
11442542 |
atgcttcattttttctcatcctcatgacggggttttagcccttattgattccttatctgggacttccatttcttactcaaatttgttaactttagtcaaa |
11442443 |
T |
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| Q |
216 |
tccttggcttctggtcttcataaaatgggtgtttcac |
252 |
Q |
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| T |
11442442 |
tccttggcttctggtcttcataaaatgggtgtttcac |
11442406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 11453210 - 11452979
Alignment:
| Q |
21 |
atcactcacccttcttggtattcaccaaaaaccggaatttacaatagtatacactctcctaggagccttccgaccgacccttttctcgacgttgtatcct |
120 |
Q |
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| T |
11453210 |
atcacttaccctcattggtattcaccaaaacctggaatttacagcagtttacagtctcctaggaaccttccaacagacccttttctcgatgttgtttcct |
11453111 |
T |
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| Q |
121 |
tcattttttctcatccacatgacggggttttagcccttattgattccttatctgggacttccatttcttactcaaatttgttaactttagtcaaatcctt |
220 |
Q |
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| T |
11453110 |
tcattttttctcaccctcatgacggggttttagcccttattgattcctcatctgggacttccatttcttactcaaatttgttaactttagtcaaatcctt |
11453011 |
T |
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| Q |
221 |
ggcttctggtcttcataaaatgggtgtttcac |
252 |
Q |
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| T |
11453010 |
ggcttctggtcttcataaaatgggtgtttcac |
11452979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 35 - 252
Target Start/End: Original strand, 29911621 - 29911839
Alignment:
| Q |
35 |
ttggtattcaccaaaaaccggaatttacaatagtatacactctcctaggagccttccgaccgacccttttctcgacgttgtatccttcattttttctcat |
134 |
Q |
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|||||||||| ||||||| ||||||||||| |||||||| ||||||| | ||||| || ||||||||||| ||| |||| |||||||||||||| || |
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| T |
29911621 |
ttggtattcatcaaaaactggaatttacaacagtatacatactcctagaaatcttccaactgacccttttcttgacattgtttccttcattttttcacac |
29911720 |
T |
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| Q |
135 |
ccacatgacgggg-ttttagcccttattgattccttatctgggacttccatttcttactcaaatttgttaactttagtcaaatccttggcttctggtctt |
233 |
Q |
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| T |
29911721 |
tctcatgatgggggttttagcccttattgattcttcatctgggtcttccatttcttactcaaagttgttacctttagtcaaatccatggcttctgcttta |
29911820 |
T |
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| Q |
234 |
cataaaatgggtgtttcac |
252 |
Q |
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|| |||||||||||||||| |
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| T |
29911821 |
cacaaaatgggtgtttcac |
29911839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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