View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6883_low_17 (Length: 263)
Name: NF6883_low_17
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6883_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 399143 - 398896
Alignment:
| Q |
10 |
aagaatattattagttgtgttgatttttagagtaaaataatgcgcaaagactaaaatattcaaattaattggagtggttgaaagtaatggtagtaaagta |
109 |
Q |
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| T |
399143 |
aagaaaatgattagttgtgttgatttttagagtaaaataatgcgcaaagactaaaatattcaaattaattggagtggttgaaagtaatggtagtaaagta |
399044 |
T |
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| Q |
110 |
gtagttaggtggactgtttaattaaataaggacttcatcgtnnnnnnngttaataagtggtatattgatattccaaagtgacaaataggctgagacaatg |
209 |
Q |
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| T |
399043 |
gtagttaggtggactgtttaattaaataaggacttcatcgtaaaaaaagttaataagtggtatattgatattccaaagtgacaaataggttgagacaatg |
398944 |
T |
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| Q |
210 |
caatgatcggagtattaaacagaaaaagtgttgatgtgtatgaaaagc |
257 |
Q |
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| T |
398943 |
caatgatcggagtattaaacagaaaaagtgttgatgtgcatgaaaagc |
398896 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 28200517 - 28200421
Alignment:
| Q |
41 |
gtaaaataatgcgcaaagactaaaatattcaaattaattggagtggttgaaagtaatggtagtaaagtagtagttaggtggactgtttaattaaataagg |
140 |
Q |
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| T |
28200517 |
gtaaaataatgtgtatagcctaaaaaacccatattaattagagtggttgaaagta---gtagtaaaggaatagctaggtggactatttaattaaataagg |
28200421 |
T |
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