View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6883_low_2 (Length: 860)
Name: NF6883_low_2
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6883_low_2 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 378 - 860
Target Start/End: Complemental strand, 43661141 - 43660661
Alignment:
| Q |
378 |
ataaaaccatgcacattttcaatttagttatgaattataatatattgtaaagtttaatttgatgatgctggacacaataacccttttagagcatgacaca |
477 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43661141 |
ataaaaccatgcacatttttaatttagttatgaatta--atatattgtaaagtttaatttgatgatgctggacacaataacccttttagagcatgacaca |
43661044 |
T |
|
| Q |
478 |
tccctttgtttacgaaataagcaaacatgggtggttgatccattagaaatagttgttgggagtggaaaatgctgagttggactaagactactttttcttc |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43661043 |
tccctttgtttacgaaataagcaaacatgggtggttgatccattagaaatagttgttgggagtggaaaatgctgagttggactaagactactttttcttc |
43660944 |
T |
|
| Q |
578 |
ctatttccccactcacattccattgtcttcttctttactgttttcatagtcaaaggaatacttatgcttatttgccaatctttttatttgttatcaactt |
677 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43660943 |
ctatttccccactcacattccattgtcttcttctttactgttttcatagtcaaaggaagacttatgcttatttgccaatctttttatttgttatcaactt |
43660844 |
T |
|
| Q |
678 |
ttataaataatcacttctattttatatatatggttaagatgctttgcacaactcacttatatttttcatcaactatcagaataataatgtgaactttact |
777 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43660843 |
ttataaataatcacttctattttatatatatggttaagatgctttgcacaactcacttatatttttcatcaactatcagaataataatgtgaactttact |
43660744 |
T |
|
| Q |
778 |
aatatcaattatttctaacatgttatacaaagcaattgtatttctttacctttctttttgaaccagttgtatttctttacttg |
860 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43660743 |
aatatcaattatttctaacatgttatacaaagcaattgtatttctttacctttctttttgaaccagttgtatttctttacttg |
43660661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 88 - 286
Target Start/End: Complemental strand, 43661498 - 43661293
Alignment:
| Q |
88 |
ggttaatgcagggaaagatactaacactctatggatgtgtttcagcattactcttttgatttatattctctaatacctgagagaatcacaatcctataat |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43661498 |
ggttaatgcagggaaagatactaacactctatggatgtgtttcagcattactcttttgatttatattctctaatacctgagagaatcacaatcctataat |
43661399 |
T |
|
| Q |
188 |
cgatttagctgaacaattgtatccacttaattagtaactta-------atgattgaaccttatttaatgtgacttattgatcaattgcgatcacatatgc |
280 |
Q |
| |
|
| ||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43661398 |
ccatttagctgaacaattgtacctacttaattagtaacttaatttcacatgattgaaccttatttaatgtgacttattgatcaattgcgatcacatatgc |
43661299 |
T |
|
| Q |
281 |
aaggtt |
286 |
Q |
| |
|
|||||| |
|
|
| T |
43661298 |
aaggtt |
43661293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 1704613 - 1704653
Alignment:
| Q |
317 |
caatacataatttaatacaattgccattcaaactcttatac |
357 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
1704613 |
caatacataattaaaaacaattgccattcaaactcttatac |
1704653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 356
Target Start/End: Original strand, 1700195 - 1700234
Alignment:
| Q |
317 |
caatacataatttaatacaattgccattcaaactcttata |
356 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
1700195 |
caatacataattaaaaacaattgccattcaaactcttata |
1700234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University