View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6883_low_20 (Length: 247)

Name: NF6883_low_20
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6883_low_20
NF6883_low_20
[»] chr5 (17 HSPs)
chr5 (1-221)||(13483143-13483367)
chr5 (32-117)||(19182970-19183055)
chr5 (32-117)||(16611748-16611833)
chr5 (32-116)||(28591132-28591216)
chr5 (43-131)||(18400196-18400284)
chr5 (43-130)||(21069296-21069383)
chr5 (32-130)||(2466792-2466890)
chr5 (32-114)||(9537046-9537127)
chr5 (32-114)||(14891165-14891243)
chr5 (32-97)||(32641744-32641809)
chr5 (80-124)||(18005297-18005341)
chr5 (32-116)||(25590452-25590535)
chr5 (32-130)||(2464676-2464774)
chr5 (32-110)||(8074478-8074556)
chr5 (32-85)||(4592913-4592966)
chr5 (35-116)||(9538070-9538151)
chr5 (37-93)||(544692-544748)
[»] chr7 (18 HSPs)
chr7 (32-116)||(8374935-8375019)
chr7 (33-116)||(44333160-44333243)
chr7 (3-116)||(8048768-8048886)
chr7 (32-116)||(10899091-10899175)
chr7 (32-117)||(48788690-48788775)
chr7 (32-116)||(35727720-35727804)
chr7 (35-130)||(8375604-8375699)
chr7 (32-130)||(48777263-48777361)
chr7 (32-112)||(44334467-44334547)
chr7 (32-116)||(48646070-48646154)
chr7 (65-131)||(2677837-2677903)
chr7 (32-130)||(39708110-39708208)
chr7 (35-117)||(42477401-42477482)
chr7 (32-93)||(30925026-30925087)
chr7 (32-116)||(7258296-7258380)
chr7 (52-130)||(34704916-34704994)
chr7 (32-130)||(43457464-43457562)
chr7 (32-85)||(46286555-46286608)
[»] chr1 (10 HSPs)
chr1 (32-116)||(5782435-5782519)
chr1 (32-130)||(6612426-6612524)
chr1 (32-130)||(32665788-32665886)
chr1 (32-116)||(7945572-7945656)
chr1 (32-112)||(10333204-10333284)
chr1 (32-121)||(52440577-52440666)
chr1 (32-85)||(9341043-9341096)
chr1 (32-81)||(34088487-34088536)
chr1 (32-86)||(22856731-22856785)
chr1 (32-92)||(3117694-3117754)
[»] chr6 (4 HSPs)
chr6 (32-131)||(31218961-31219060)
chr6 (32-116)||(31219178-31219262)
chr6 (32-130)||(30748006-30748104)
chr6 (44-120)||(6468811-6468887)
[»] chr3 (19 HSPs)
chr3 (32-130)||(17700525-17700623)
chr3 (32-116)||(34263826-34263910)
chr3 (32-130)||(2591634-2591732)
chr3 (32-130)||(17701937-17702035)
chr3 (32-130)||(55388080-55388178)
chr3 (32-93)||(53959118-53959179)
chr3 (32-116)||(48573006-48573090)
chr3 (35-129)||(52316987-52317081)
chr3 (32-114)||(55389487-55389569)
chr3 (32-105)||(11773069-11773142)
chr3 (32-129)||(19114541-19114638)
chr3 (65-130)||(20464512-20464577)
chr3 (5-110)||(47427887-47427992)
chr3 (32-113)||(50753841-50753922)
chr3 (32-115)||(20464091-20464174)
chr3 (43-130)||(52318346-52318433)
chr3 (32-130)||(45600957-45601054)
chr3 (32-93)||(48808410-48808471)
chr3 (60-116)||(19115192-19115248)
[»] chr8 (10 HSPs)
chr8 (3-85)||(41121161-41121244)
chr8 (32-112)||(41754813-41754893)
chr8 (35-117)||(8569428-8569510)
chr8 (32-130)||(32898463-32898561)
chr8 (32-129)||(30134574-30134671)
chr8 (32-112)||(35177420-35177500)
chr8 (34-85)||(1951994-1952045)
chr8 (32-130)||(10407602-10407700)
chr8 (32-85)||(5965460-5965513)
chr8 (32-116)||(35178822-35178906)
[»] chr2 (12 HSPs)
chr2 (3-117)||(17466812-17466931)
chr2 (35-116)||(39015026-39015107)
chr2 (32-116)||(31091545-31091629)
chr2 (32-116)||(32766257-32766341)
chr2 (34-130)||(5915012-5915108)
chr2 (32-124)||(17330248-17330340)
chr2 (32-116)||(24459464-24459548)
chr2 (32-129)||(2910108-2910205)
chr2 (32-93)||(32764982-32765043)
chr2 (32-131)||(34582688-34582787)
chr2 (32-130)||(34037691-34037789)
chr2 (32-81)||(21733789-21733838)
[»] scaffold0039 (1 HSPs)
scaffold0039 (32-116)||(79094-79178)
[»] chr4 (12 HSPs)
chr4 (32-130)||(42278056-42278154)
chr4 (33-131)||(53770339-53770437)
chr4 (32-114)||(54574448-54574530)
chr4 (32-113)||(31844746-31844827)
chr4 (32-124)||(39868935-39869025)
chr4 (32-92)||(26172960-26173020)
chr4 (65-129)||(42391939-42392003)
chr4 (32-131)||(53771067-53771166)
chr4 (32-130)||(47874571-47874669)
chr4 (32-116)||(47878502-47878586)
chr4 (3-108)||(4701794-4701904)
chr4 (32-77)||(26170700-26170745)
[»] scaffold0034 (1 HSPs)
scaffold0034 (32-112)||(116080-116160)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13483143 - 13483367
Alignment:
Q  1 caatcacttaatagaattatttaaccttaggaagtgataatggaagtgcaaagtcagaaacttgtttgtatttaa----tcatgagtcaaagacctacgt 96  Q
    ||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||    |||||||||||||||||||||    
T  13483143 caatcacttaacagaattatttaacgttaggaagtgataacggaagtgcaaagtcagagacttgtttgtatttaattaatcatgagtcaaagacctacgt 13483242  T
Q  97 ggcagcgaggtgcagagtcaaagactaacgtgaccgctccacgtaaatttaaaaaataatttatacatttcatagaagacttgtttaatactgctaataa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13483243 ggcagcgaggtgcagagtcaaagactaacgtgaccgctccacgtaaatttaaaaaataatttatacatttcatagaagacttgtttaatactgctaataa 13483342  T
Q  197 cggttctcttttgggagcttaaaac 221  Q
    | |||||||||||||||||||||||    
T  13483343 cagttctcttttgggagcttaaaac 13483367  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 19183055 - 19182970
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaa 117  Q
    ||||||||| ||||||| | |||||| ||||| ||||||||||||| ||||||| ||||||| ||| |||||||||||| ||||||    
T  19183055 aagtgataacggaagtgtagagtcaggaacttatttgtatttaatcctgagtcagagacctatgtgacagcgaggtgcaaagtcaa 19182970  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 16611833 - 16611748
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaa 117  Q
    ||||||||| ||||||||| | |||||  ||| ||||||||||||| ||||||| ||||||| ||| |||||||||| ||||||||    
T  16611833 aagtgataacggaagtgcataatcagaggcttctttgtatttaatcctgagtcagagacctatgtgacagcgaggtgtagagtcaa 16611748  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 28591132 - 28591216
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    ||||||||| ||||||||| ||||||  | || ||||||||||||| |||||||  |||||| ||| ||||||||||||||||||    
T  28591132 aagtgataaaggaagtgcagagtcagggatttatttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtca 28591216  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 18400284 - 18400196
Alignment:
Q  43 gaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgacc 131  Q
    |||||||| ||||||  |||| ||| ||||||||| |||||||| |||||| ||| ||| ||||||||||||||  |||||| ||||||    
T  18400284 gaagtgcagagtcagtgacttctttttatttaatcctgagtcaaggacctatgtgacagtgaggtgcagagtcagggactaaagtgacc 18400196  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 21069383 - 21069296
Alignment:
Q  43 gaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    |||||||| |||||   |||| ||||||||||||| ||||||| ||||||  ||| || ||||||||||||||| ||||||| |||||    
T  21069383 gaagtgcagagtcaaggacttatttgtatttaatcctgagtcagagacctctgtgacaacgaggtgcagagtcagagactaaagtgac 21069296  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 2466792 - 2466890
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||| ||||||||| ||| ||  |||| ||| ||||||||| ||| |||| |||||| |||  ||||||||||||||||| |||| || |||||    
T  2466792 aagtgataacggaagtgcagagttagggacttatttttatttaatcctgaatcaatgacctatgtgatagcgaggtgcagagtcagagaccaaagtgac 2466890  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 9537127 - 9537046
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagt 114  Q
    ||||||||||||||||||| |||||  | ||| ||||||||||||  | ||||| ||||||| ||| ||||||||||||||||    
T  9537127 aagtgataatggaagtgcacagtcatga-cttctttgtatttaattctaagtcagagacctatgtgacagcgaggtgcagagt 9537046  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 14891165 - 14891243
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagt 114  Q
    ||||||||| ||||||| | ||||||| |||||     |||||||||||||||| ||||||| ||| ||||||||||||||||    
T  14891165 aagtgataacggaagtgtagagtcagagacttgc----atttaatcatgagtcagagacctatgtgacagcgaggtgcagagt 14891243  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 32641744 - 32641809
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtg 97  Q
    ||||||||| ||||||||| |||||| ||||| ||||||||||||| ||||| |  ||||||||||    
T  32641744 aagtgataacggaagtgcagagtcagcaacttatttgtatttaatcttgagtaagggacctacgtg 32641809  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 18005297 - 18005341
Alignment:
Q  80 gagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaa 124  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||    
T  18005297 gagtcaaagacctatgtggcagcgaggcgcagagttaaagactaa 18005341  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 25590535 - 25590452
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    |||||||||  |||||||| | ||||| |||| |||||||||||||  ||||||  |||||| ||| ||||||||||||||||||    
T  25590535 aagtgataacagaagtgcagaatcagagacttatttgtatttaatc-cgagtcagggacctatgtgacagcgaggtgcagagtca 25590452  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 2464774 - 2464676
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||| | ||||||| ||| ||  |||| |||||||||||||||||||||  ||||||  || ||||||| |||||| |||  |||||| |||||    
T  2464774 aagtgataacgtaagtgcagagttagggacttatttgtatttaatcatgagtcatggacctatatgacagcgagctgcagaatcagtgactaaagtgac 2464676  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 8074556 - 8074478
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgca 110  Q
    ||||||||| ||||||||| ||||||  |||| ||||||||||||| |||||||  ||| || ||| ||||||| ||||    
T  8074556 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacttatgtgacagcgagctgca 8074478  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 4592966 - 4592913
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtca 85  Q
    ||||||||| ||||||||| ||||||  |||| ||||||||||||| |||||||    
T  4592966 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtca 4592913  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 9538070 - 9538151
Alignment:
Q  35 tgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    |||||| ||||||||| | ||||| |||| ||||||||||||| |||||||  ||||||  || || |||| ||||||||||    
T  9538070 tgataacggaagtgcacaatcagagacttctttgtatttaatcctgagtcagggacctatatgacaacgagatgcagagtca 9538151  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 544748 - 544692
Alignment:
Q  37 ataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagaccta 93  Q
    |||| ||||||||| ||||||  |||| ||||||||||||| ||||||| |||||||    
T  544748 ataacggaagtgcagagtcagtgacttatttgtatttaatcctgagtcagagaccta 544692  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 8375019 - 8374935
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||||  ||||||| ||||||| ||| ||||||||||||||||||    
T  8375019 aagtgataacggaagtgcaaaatcagaaacttttttgtatttaattctgagtcagagacctatgtgacagcgaggtgcagagtca 8374935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 44333243 - 44333160
Alignment:
Q  33 agtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    |||||||| ||||||||| ||||||| |||| |||||||||||||||||||||  |||||| ||| ||||||||||||||||||    
T  44333243 agtgataacggaagtgcagagtcagagacttatttgtatttaatcatgagtcagggacctatgtgacagcgaggtgcagagtca 44333160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 8048768 - 8048886
Alignment:
Q  3 atcacttaatagaattatttaaccttagg-----aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtg 97  Q
    ||||||||||||||||||||||| |||       ||||||||| ||||||||| |||| || |||| ||||||||||||| ||||||| ||||||  |||    
T  8048768 atcacttaatagaattatttaacgttaaagattaaagtgataacggaagtgcagagtcggagacttctttgtatttaatcttgagtcagagacctttgtg 8048867  T
Q  98 gcagcgaggtgcagagtca 116  Q
     ||||||||||||||||||    
T  8048868 tcagcgaggtgcagagtca 8048886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 10899091 - 10899175
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    ||||||||| ||||||||| ||||||| |||| ||||||||||||| || ||||| || ||| ||| ||||||||||||||||||    
T  10899091 aagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgggtcaaggatctatgtgacagcgaggtgcagagtca 10899175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 48788690 - 48788775
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaa 117  Q
    ||||||||| ||||||||| ||||||| |||| ||| |||||||| ||||||||  |||||| ||| |||||||||||| ||||||    
T  48788690 aagtgataacggaagtgcagagtcagagacttatttatatttaattatgagtcagggacctatgtgacagcgaggtgcaaagtcaa 48788775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 35727804 - 35727720
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    ||||||||| ||| ||||| ||||||| |||| ||| ||||||||| |||||||  |||||| ||| ||||||||||||||||||    
T  35727804 aagtgataacggatgtgcagagtcagagacttatttatatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtca 35727720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 8375604 - 8375699
Alignment:
Q  35 tgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    |||||| ||||||||| |||||||||||| |||||||||||||||||||||  |||||| ||| ||| | |||||  |||||  |||||| |||||    
T  8375604 tgataacggaagtgcagagtcagaaacttctttgtatttaatcatgagtcagggacctatgtgacagtgcggtgcgaagtcagggactaatgtgac 8375699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 48777361 - 48777263
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||| ||||||||| ||||||  | || |||||||||||||||||||||  ||| || ||| ||||||| |||||| ||| ||||||| |||||    
T  48777361 aagtgataacggaagtgcagagtcagggaattatttgtatttaatcatgagtcagggacttatgtgacagcgagctgcagaatcagagactaaagtgac 48777263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 44334467 - 44334547
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcaga 112  Q
    ||||||||||||||||||| ||||||  |||| ||| |||||||||||||||||  |||||| ||  ||||||| ||||||    
T  44334467 aagtgataatggaagtgcagagtcagggacttatttatatttaatcatgagtcagggacctatgtaacagcgagctgcaga 44334547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 48646154 - 48646070
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    ||||||||| ||||||| | ||||||  |||| ||||||||||||| |||||||  |||||| ||| |||||||||||| |||||    
T  48646154 aagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcatagtca 48646070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 2677837 - 2677903
Alignment:
Q  65 tttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgacc 131  Q
    ||||||||||||||||||||| ||||||  ||| || |||||| ||||||||||||| || ||||||    
T  2677837 tttgtatttaatcatgagtcatagacctttgtgacaacgaggtacagagtcaaagaccaaggtgacc 2677903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 39708208 - 39708110
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||| |||||||||||||| |  |||| |||||||| |||| |||||||  |||||  ||| | ||||||| |||||||| ||||||| |||||    
T  39708208 aagtgataacggaagtgcaaagtcggtgacttctttgtattcaatcttgagtcatggacctttgtgacggcgaggtacagagtcagagactaaagtgac 39708110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 42477482 - 42477401
Alignment:
Q  35 tgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaa 117  Q
    |||||| ||||||||| |||||| | ||| ||||||||||||| ||||||| ||||||| | | || ||||||||||||||||    
T  42477482 tgataacggaagtgcagagtcagga-cttatttgtatttaatcctgagtcagagacctatgcgacaacgaggtgcagagtcaa 42477401  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 30925026 - 30925087
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagaccta 93  Q
    |||| |||| ||||||||| ||||||| |||| ||||||||||||| |||||||| ||||||    
T  30925026 aagtaataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaaggaccta 30925087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 7258380 - 7258296
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    |||||||||  |||||||| ||||||| |||| ||||||||||||| ||||| |  |||||| ||| || ||||||| |||||||    
T  7258380 aagtgataacagaagtgcagagtcagagacttatttgtatttaatcctgagttagggacctatgtgacaacgaggtgtagagtca 7258296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 34704994 - 34704916
Alignment:
Q  52 agtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||| |||| ||||||||||||| ||||||| || |||  ||| || ||||||||||||||  ||||||| |||||    
T  34704994 agtcagagacttctttgtatttaatcctgagtcagaggcctttgtgacaacgaggtgcagagtcggagactaaagtgac 34704916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 43457562 - 43457464
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||| ||||||||| |||| |  |||| ||||||||||||| |||||||  |||||| | | ||||||| |||||| |||  |||||| |||||    
T  43457562 aagtgataacggaagtgcagagtcggggacttatttgtatttaatcctgagtcagggacctatgcgacagcgagctgcagaatcagggactaaagtgac 43457464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 46286608 - 46286555
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtca 85  Q
    |||||||||  |||||||| ||||||| |||| ||||||||||||| |||||||    
T  46286608 aagtgataacagaagtgcagagtcagagacttatttgtatttaatcctgagtca 46286555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 5782519 - 5782435
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    ||||||||| ||||||||| | ||||| |||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  5782519 aagtgataagggaagtgcataatcagagacttctttgtatttaatcatgagtcagagacctatgtgacagcgaggtgcagagtca 5782435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 6612524 - 6612426
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |   |  ||||||||||||||||||  |||||| |||||    
T  6612524 aagtgataatggaagtgcagagtcagagacttgtttgtatttaatcatgagtcagagacatttataacagcgaggtgcagagtcagggactaaagtgac 6612426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 32665788 - 32665886
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||| ||||||||| ||||| | |||| ||||||||||||||||||||| ||||||| ||| ||||||| |||||| |||  |||||| |||||    
T  32665788 aagtgataacggaagtgcagagtcaaagacttatttgtatttaatcatgagtcagagacctatgtgacagcgagctgcagaatcagggactaaagtgac 32665886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 7945572 - 7945656
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    ||||||||| ||||||||| ||||||| |||| ||||||||||||| |||||||   ||||| ||| ||||||||||||||||||    
T  7945572 aagtgataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaggaacctatgtgacagcgaggtgcagagtca 7945656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 10333204 - 10333284
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcaga 112  Q
    ||||||||| ||||||||| ||||||| |||| ||||||||||||| ||||||| ||||||| ||  ||||||| ||||||    
T  10333204 aagtgataacggaagtgcagagtcagagacttatttgtatttaatcttgagtcagagacctatgtaacagcgagctgcaga 10333284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 52440577 - 52440666
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagac 121  Q
    ||||||||||||||||||| ||||||| |||| ||| ||||||||| ||| |||  |||||| ||| |||||| ||||| ||||| ||||    
T  52440577 aagtgataatggaagtgcagagtcagagacttatttatatttaatcctgactcagggacctatgtgacagcgatgtgcaaagtcagagac 52440666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 9341043 - 9341096
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtca 85  Q
    |||||||||  |||||||||||||||| |||| ||||||||||||| |||||||    
T  9341043 aagtgataacagaagtgcaaagtcagagacttatttgtatttaatcctgagtca 9341096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 34088487 - 34088536
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatga 81  Q
    |||||||| |||||||||| ||||||| |||| |||||||||||||||||    
T  34088487 aagtgatagtggaagtgcagagtcagagacttctttgtatttaatcatga 34088536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 22856785 - 22856731
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaa 86  Q
    ||||||||| ||||||||| ||| ||| |||| ||||||||||||| ||||||||    
T  22856785 aagtgataacggaagtgcagagttagagacttctttgtatttaatcctgagtcaa 22856731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 3117754 - 3117694
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacct 92  Q
    ||||||||| ||||||| | ||||||| | || ||||||||||||| ||||||| ||||||    
T  3117754 aagtgataacggaagtggagagtcagagatttctttgtatttaatcttgagtcagagacct 3117694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 31219060 - 31218961
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgacc 131  Q
    ||||||||| ||||||||| |||||| ||||| ||||||||||||| ||||| || |||||| ||| |||||||||||||||||| ||| ||| ||||||    
T  31219060 aagtgataacggaagtgcagagtcaggaacttctttgtatttaatcctgagttaaggacctatgtgacagcgaggtgcagagtcagagattaaagtgacc 31218961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 31219178 - 31219262
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    ||||||||| |||||||   |||||| ||||| ||||||||||||| ||||| || |||||| ||| ||||||||||||||||||    
T  31219178 aagtgataacggaagtgtcgagtcaggaacttctttgtatttaatcctgagttaatgacctatgtgacagcgaggtgcagagtca 31219262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 30748104 - 30748006
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||| | ||||| | ||||||| |||||||||||||||||| | |||||  |||||| ||| |||||||||||||| |||  |||||| |||||    
T  30748104 aagtgataacgaaagtgtagagtcagagacttgtttgtatttaatcctaagtcagggacctatgtgacagcgaggtgcagaatcagggactaaagtgac 30748006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 6468811 - 6468887
Alignment:
Q  44 aagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaaga 120  Q
    ||||||| | ||||| |||  |||||||||||||||||||||  |||||  ||| ||||||  ||||||||||||||    
T  6468811 aagtgcacattcagagactattttgtatttaatcatgagtcagggacctttgtgacagcgatatgcagagtcaaaga 6468887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 17700623 - 17700525
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||| ||||||||| ||||||  |||| ||||||||||||| |||||||   ||||| ||| || ||||||||||||||||||||||| |||||    
T  17700623 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcaggaacctatgtgacaacgaggtgcagagtcaaagactaaagtgac 17700525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 34263910 - 34263826
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    ||||||||||||||||| | ||||||| |||| ||||||||||||| ||| |||| |||||  ||| ||||||||||||||||||    
T  34263910 aagtgataatggaagtgtagagtcagagacttatttgtatttaatcctgaatcaaggacctctgtgacagcgaggtgcagagtca 34263826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 2591732 - 2591634
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||| ||||||||||| ||||||| |||||||||||||||||| |||||||  |||||| ||| |||| || |||||| |||  |||||| |||||    
T  2591732 aagtgatcatggaagtgcagagtcagagacttgtttgtatttaatcctgagtcagggacctatgtgacagcaagctgcagaatcagggactaaagtgac 2591634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 17701937 - 17702035
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||| ||||||||| ||||||  |||| ||||||||||||| |||||||  ||||||  || ||||||| |||||| ||| ||||||| |||||    
T  17701937 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggacctatatgacagcgagctgcagaatcagagactaaagtgac 17702035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 55388178 - 55388080
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||| || |||||| |||||| ||||| ||||||||||||| ||||||| |||||||  || ||||||| |||||| |||  |||||| |||||    
T  55388178 aagtgataacgggagtgcagagtcagtaacttatttgtatttaatcctgagtcagagacctatatgacagcgagctgcagaatcagggactaaagtgac 55388080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 53959118 - 53959179
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagaccta 93  Q
    ||||||||| ||||||||| |||||  ||||| ||||||||||||||||||||| |||||||    
T  53959118 aagtgataacggaagtgcagagtcatgaacttatttgtatttaatcatgagtcagagaccta 53959179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 48573090 - 48573006
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    ||||||||| ||||||||| |||||||  ||| ||||||||||||| |||||||  |||||| |||  | |||||||||||||||    
T  48573090 aagtgataacggaagtgcagagtcagaggcttatttgtatttaatcctgagtcagggacctatgtgataacgaggtgcagagtca 48573006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 52317081 - 52316987
Alignment:
Q  35 tgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtga 129  Q
    |||||| ||| ||||| ||| | | |||| ||||||||||||||||||||| |||||||  || ||||||| |||||| ||| ||||||| ||||    
T  52317081 tgataacggaggtgcagagttaaagacttatttgtatttaatcatgagtcagagacctatatgacagcgagctgcagaatcagagactaaagtga 52316987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 55389487 - 55389569
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagt 114  Q
    ||||||||| ||||||| | ||||||  ||||  |||||||||||  |||||||| |||||| ||| ||||||||||||||||    
T  55389487 aagtgataacggaagtgtagagtcagggacttaattgtatttaattttgagtcaatgacctatgtgacagcgaggtgcagagt 55389569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 11773069 - 11773142
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgag 105  Q
    ||||||||| ||||||| | ||||||| |||| ||||||||||||| |||||||  |||||| ||| |||||||    
T  11773069 aagtgataacggaagtgtagagtcagagacttatttgtatttaatcctgagtcagggacctatgtgacagcgag 11773142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 19114638 - 19114541
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtga 129  Q
    ||||||||| ||||||||||||| ||  |||| ||||||||||||| |||||||  |||||  ||| || ||| |||||||||||  |||||| ||||    
T  19114638 aagtgataacggaagtgcaaagttagtgacttctttgtatttaatcttgagtcagggacctctgtgacaacgaagtgcagagtcagggactaaagtga 19114541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 20464512 - 20464577
Alignment:
Q  65 tttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    |||||||||||| |||||||||| ||||  ||| |||| |||||||||||||| |||||| |||||    
T  20464512 tttgtatttaattatgagtcaaaaacctttgtgacagcaaggtgcagagtcaaggactaaagtgac 20464577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 47427992 - 47427887
Alignment:
Q  5 cacttaatagaattatttaaccttaggaagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcga 104  Q
    ||||||| | ||||||||||| | || || || ||| | ||||||| ||||||  |||| ||||||||||||  |||||||| |||||| ||| ||||||    
T  47427992 cacttaacataattatttaacgtcagaaaatgctaacgtaagtgcacagtcagggacttctttgtatttaattttgagtcaaggacctatgtgacagcga 47427893  T
Q  105 ggtgca 110  Q
    ||||||    
T  47427892 ggtgca 47427887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 50753922 - 50753841
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagag 113  Q
    |||||||||  |||||| | |||||||||||||||| ||||||||| ||| | |  |||||| ||| |||||||||||||||    
T  50753922 aagtgataacagaagtgtagagtcagaaacttgtttatatttaatcctgaattagggacctatgtgacagcgaggtgcagag 50753841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 20464174 - 20464091
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtc 115  Q
    |||||||||  |||||||| ||||||  |||| |||||||||||||||||| ||  |||||  ||| || ||||||||||||||    
T  20464174 aagtgataacagaagtgcagagtcagggacttctttgtatttaatcatgagccagggacctttgtgacaacgaggtgcagagtc 20464091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 52318346 - 52318433
Alignment:
Q  43 gaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    |||||||| ||||||  |||| ||||||||||||| |||||||  || ||| ||| |||||| ||||||||||| |||| || |||||    
T  52318346 gaagtgcagagtcagggacttatttgtatttaatcctgagtcagggatctatgtgacagcgaagtgcagagtcagagaccaaagtgac 52318433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 45600957 - 45601054
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||| ||||||||| |||||| | ||| ||||||||||||| ||| |||  |||||| ||| ||||||||  ||||||||  |||||| |||||    
T  45600957 aagtgataacggaagtgcagagtcagga-cttctttgtatttaatcctgaatcagggacctatgtgacagcgagggacagagtcagggactaaagtgac 45601054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 48808471 - 48808410
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagaccta 93  Q
    |||||| || ||||||||| ||| || ||||| ||||||||||||| ||||||| |||||||    
T  48808471 aagtgacaacggaagtgcagagttaggaacttatttgtatttaatcctgagtcagagaccta 48808410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 19115192 - 19115248
Alignment:
Q  60 acttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    |||| ||||||||||||| ||||| || |||||| ||| || |||||||||||||||    
T  19115192 acttctttgtatttaatcctgagtgaaggacctatgtgacatcgaggtgcagagtca 19115248  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 41121244 - 41121161
Alignment:
Q  3 atcacttaatagaattatttaaccttag-gaagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtca 85  Q
    ||||||| | ||||||||||||| || | ||||||||||| |||||||| ||||||| |||| |||||||||||||||||||||    
T  41121244 atcactttacagaattatttaacgttggtgaagtgataatagaagtgcatagtcagagacttctttgtatttaatcatgagtca 41121161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 41754813 - 41754893
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcaga 112  Q
    |||| |||| ||||||| | |||||| ||||||||||||||||||| ||||||| ||| ||| ||| ||||||||||||||    
T  41754813 aagtaataacggaagtgtagagtcaggaacttgtttgtatttaatcctgagtcagagatctatgtgacagcgaggtgcaga 41754893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 8569510 - 8569428
Alignment:
Q  35 tgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaa 117  Q
    |||||| | ||||||| | ||| |||||  ||||||||||||||||||||||||||||  |||  ||||||||| ||||||||    
T  8569510 tgataacgaaagtgcacattcataaactactttgtatttaatcatgagtcaaagacctttgtgagagcgaggtgaagagtcaa 8569428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 32898463 - 32898561
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||| ||||||||| ||||||  |||| ||||||||||||| | |||||  |||||| ||| ||| ||| ||||||||||  |||||| |||||    
T  32898463 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcctaagtcagggacctatgtgacagtgagttgcagagtcagggactaaagtgac 32898561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 30134671 - 30134574
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtga 129  Q
    |||||||||  |||||||| ||||| | |||| |||||||||||||||||||    |||||  ||| |||||||||||||||| || |||||| ||||    
T  30134671 aagtgataacagaagtgcagagtcacacacttctttgtatttaatcatgagtaggggacctttgtgacagcgaggtgcagagttaaggactaaagtga 30134574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 35177500 - 35177420
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcaga 112  Q
    ||||||||| ||||||||| ||||||  |||| |||||||||||||  ||||||  |||||| ||| ||||||| ||||||    
T  35177500 aagtgataacggaagtgcagagtcagggacttatttgtatttaatccggagtcagggacctatgtgacagcgagctgcaga 35177420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 1952045 - 1951994
Alignment:
Q  34 gtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtca 85  Q
    ||||||||| || |||| |||||||||||| ||||||||||||| |||||||    
T  1952045 gtgataatgaaaatgcagagtcagaaacttatttgtatttaatcctgagtca 1951994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 10407602 - 10407700
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||| ||||||||||||| |   |||| ||||| ||||||| | |||||| |||||| ||| ||| ||| |||||| ||| ||||||| |||||    
T  10407602 aagtgataacggaagtgcaaagttatggacttatttgtgtttaatcctaagtcaatgacctatgtgacagtgagctgcagaatcagagactaaagtgac 10407700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 5965460 - 5965513
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtca 85  Q
    ||||||||| ||||||||| ||||| | |||| ||||||||||||| |||||||    
T  5965460 aagtgataacggaagtgcagagtcaaagacttctttgtatttaatcctgagtca 5965513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 35178822 - 35178906
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    ||||||||| ||||||||| | ||||  |||| ||||||||||||| |||||||  |||| |  || |||||| |||||||||||    
T  35178822 aagtgataacggaagtgcagaatcagggacttatttgtatttaatcctgagtcagggaccaatatgacagcgatgtgcagagtca 35178906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 17466812 - 17466931
Alignment:
Q  3 atcacttaatagaattatttaac--cttagg---aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtg 97  Q
    ||||||||| |||||||||||||  |||||    ||||||||| ||||||||| ||||||| |||| ||||||||||||| |||||||  | | || |||    
T  17466812 atcacttaacagaattatttaacgtcttagactaaagtgataacggaagtgcagagtcagagacttctttgtatttaatcctgagtcagcggcttatgtg 17466911  T
Q  98 gcagcgaggtgcagagtcaa 117  Q
     |||||||||||||||||||    
T  17466912 acagcgaggtgcagagtcaa 17466931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 39015107 - 39015026
Alignment:
Q  35 tgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    |||||||| ||||||| ||||| | || | ||||||||||||| |||||||| || ||| ||||||||||||||||||||||    
T  39015107 tgataatgaaagtgcagagtcaaagacgtatttgtatttaatcctgagtcaaggatctatgtggcagcgaggtgcagagtca 39015026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 31091545 - 31091629
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    ||||||||| ||||||||| ||||||  |||| ||||||||||||| |||||||  |||||| ||| |||| |||||||||||||    
T  31091545 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtca 31091629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 32766257 - 32766341
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    ||||||||| ||||||||| ||||||  |||| ||||||||||||| |||||||  |||||| ||| || |||||||||||||||    
T  32766257 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacaacgaggtgcagagtca 32766341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 5915012 - 5915108
Alignment:
Q  34 gtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||| ||||||||| ||| ||  |||| ||||||||||||  |||||||||||||||  ||  |||||||||||||||||  |||||| |||||    
T  5915012 gtgataacggaagtgcagagttagtgacttctttgtatttaattctgagtcaaagacctatttgaaagcgaggtgcagagtcatggactaaagtgac 5915108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 17330248 - 17330340
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaa 124  Q
    ||||||||| |||| |||| ||||||| |||| ||||||||||||| |||||||  |||||| ||| ||| ||| |||||| |||| ||||||    
T  17330248 aagtgataacggaaatgcagagtcagagacttatttgtatttaatcctgagtcagggacctatgtgacagtgagctgcagaatcaaggactaa 17330340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 24459464 - 24459548
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    |||||||||| ||||||||  |||||| |||| ||||||||||||| ||| |||  |||||| ||| ||||||| ||||||||||    
T  24459464 aagtgataatagaagtgcagggtcagagacttatttgtatttaatcctgattcagggacctatgtgacagcgagatgcagagtca 24459548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 2910205 - 2910108
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtga 129  Q
    |||||| || ||||||||| ||||||| |||| |||||||||||||  ||||||  || ||| ||| ||||||| |||| | ||||||||||| ||||    
T  2910205 aagtgacaaaggaagtgcagagtcagagacttatttgtatttaatcccgagtcagggatctatgtgacagcgagctgcaaaatcaaagactaaagtga 2910108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 32765043 - 32764982
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagaccta 93  Q
    ||||||||| ||||||||| ||||||  |||| ||||||||||||| ||||||| |||||||    
T  32765043 aagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagagaccta 32764982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 34582688 - 34582787
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgacc 131  Q
    ||||||||| ||||||||| | ||||  |||  |||||||||||||  ||||||| |||||  ||  |||| |||||||||||||  |||||||||||||    
T  34582688 aagtgataacggaagtgcacattcagggactactttgtatttaatcccgagtcaatgacctttgtaacagcaaggtgcagagtcagggactaacgtgacc 34582787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 34037691 - 34037789
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    |||||||||  |||||||| ||||| | |||| ||||||||||||| ||||| |  |||||   || |||| |||||||||||||| |||||| |||||    
T  34037691 aagtgataacagaagtgcagagtcatagacttatttgtatttaatcctgagttatggacctttatgacagcaaggtgcagagtcaaggactaaagtgac 34037789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 21733789 - 21733838
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatga 81  Q
    ||||||| | ||||||||| ||||||| |||| |||||||||||||||||    
T  21733789 aagtgatgacggaagtgcagagtcagagacttatttgtatttaatcatga 21733838  T

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Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 79178 - 79094
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    ||||||||  ||| |||||||||||   |||| ||| |||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  79178 aagtgatatcggaggtgcaaagtcaaggacttctttttatttaatcatgagtcaaggacctatgtgacagcgaggtgcagagtca 79094  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 42278154 - 42278056
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||| ||||||||| |||||| ||||| |||||||||||||  ||||||  |||||| ||| |||| || |||||| |||| |||||| |||||    
T  42278154 aagtgataacggaagtgcagagtcaggaacttatttgtatttaatcccgagtcagggacctatgtgacagcaagctgcagaatcaaggactaaagtgac 42278056  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 53770437 - 53770339
Alignment:
Q  33 agtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgacc 131  Q
    |||||||||||||||||| ||||| | |||| ||||||||||||  |||||||   ||||| |||   |||||||||||||||| ||||||| ||||||    
T  53770437 agtgataatggaagtgcagagtcatagacttctttgtatttaattctgagtcaggaacctatgtgaatgcgaggtgcagagtcagagactaaagtgacc 53770339  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 54574530 - 54574448
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagt 114  Q
    ||||||||| ||||||||| ||| |  ||||| ||||||||||||| ||||||| ||||||| ||| ||||||| ||||||||    
T  54574530 aagtgataacggaagtgcagagttaagaacttatttgtatttaatcctgagtcagagacctatgtgacagcgagatgcagagt 54574448  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 31844827 - 31844746
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagag 113  Q
    ||||||||| ||||||| | ||| ||  |||||||||||||||||| |||||||  |||||| ||| |||||||||||||||    
T  31844827 aagtgataagggaagtgtagagttagggacttgtttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcagag 31844746  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 39869025 - 39868935
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaa 124  Q
    ||||||||| ||||||||| ||||   |||||||||||||||||| ||||||||  |||||  ||  |||||||||||||||||| |||||||    
T  39869025 aagtgataacggaagtgcagagtcg--aacttgtttgtatttaattatgagtcagggacctttgtaacagcgaggtgcagagtcagagactaa 39868935  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 26172960 - 26173020
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacct 92  Q
    ||||||||| ||||||||| ||||||| |||| ||||||||||||| |||||||| |||||    
T  26172960 aagtgataacggaagtgcagagtcagagacttatttgtatttaatcttgagtcaaggacct 26173020  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 42391939 - 42392003
Alignment:
Q  65 tttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtga 129  Q
    ||||||||||||||||||||| ||||||| ||| ||| ||||||| |||||| ||||||| ||||    
T  42391939 tttgtatttaatcatgagtcagagacctatgtgacagtgaggtgcggagtcagagactaaagtga 42392003  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 53771067 - 53771166
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgacc 131  Q
    ||||||||| ||||||||| ||||||   ||| ||||||||||||  |||||||  |||||| ||| || |||||||||||||||  |||||| ||||||    
T  53771067 aagtgataacggaagtgcagagtcaggggcttctttgtatttaattctgagtcagggacctatgtgacaacgaggtgcagagtcagggactaaagtgacc 53771166  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 47874669 - 47874571
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtcaaagactaacgtgac 130  Q
    ||||||||| ||||||||| | ||||  |||| ||||||||||||| |||||||  |||||| |||  |||||| |||||| ||| ||||||| |||||    
T  47874669 aagtgataacggaagtgcagaatcagggacttatttgtatttaatcttgagtcagggacctatgtgatagcgagctgcagaatcagagactaaagtgac 47874571  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 47878502 - 47878586
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcagagtca 116  Q
    ||||||||| ||||||| | ||||||  |||| |||||||||||||  ||||||  |||||| ||  ||||||||||||||||||    
T  47878502 aagtgataacggaagtgtagagtcagggacttatttgtatttaatccagagtcagggacctatgtaacagcgaggtgcagagtca 47878586  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 4701904 - 4701794
Alignment:
Q  3 atcacttaatagaattatttaaccttagg-----aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtg 97  Q
    ||||||||| ||||||||||||| | |||     ||||||||  ||||||||| |||| |  |||| ||||||||||||||| ||||| ||||||  |||    
T  4701904 atcacttaacagaattatttaacatcagggactaaagtgatagcggaagtgcatagtcggggacttctttgtatttaatcataagtcatagacctttgtg 4701805  T
Q  98 gcagcgaggtg 108  Q
     ||||||||||    
T  4701804 acagcgaggtg 4701794  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 26170745 - 26170700
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatc 77  Q
    ||||||||||||||||||| ||| || ||||| |||||||||||||    
T  26170745 aagtgataatggaagtgcagagtaaggaacttatttgtatttaatc 26170700  T

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Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 116160 - 116080
Alignment:
Q  32 aagtgataatggaagtgcaaagtcagaaacttgtttgtatttaatcatgagtcaaagacctacgtggcagcgaggtgcaga 112  Q
    ||||||||| ||||||||| ||||||  |||| ||||||||||||| |||||||  |||||| ||| ||||||| ||||||    
T  116160 aagtgataacggaagtgcatagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgagctgcaga 116080  T

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