View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6883_low_22 (Length: 239)
Name: NF6883_low_22
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6883_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 6805663 - 6805882
Alignment:
| Q |
1 |
catatactctgataaccatttgcttgcttctctataacttctcccattttccaaaacttcttcacctgatacagaattatcacatacatttgttgcaaca |
100 |
Q |
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| T |
6805663 |
catatactctgataaccatttgcttgcttctctataacttctcccattttccaaaacttcttcaccttatacagaattatcacatacatttgttgcaaca |
6805762 |
T |
|
| Q |
101 |
tgccataaaagaatgctttgatcaaattctacctccacagtactcctccgtattgtctctatcnnnnnnnctgccttctccttatccttaatctgttgtt |
200 |
Q |
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| T |
6805763 |
tgccataacagaatgctttgatcaaattctacctccacggtactcctccgtattgtctctatctttttttttgccttctccttatccttaatctgttgtt |
6805862 |
T |
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| Q |
201 |
ttaattcttccaaagctttg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
6805863 |
ttaattcttccaaagctttg |
6805882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 7327809 - 7327953
Alignment:
| Q |
1 |
catatactctgataaccatttgcttgcttctctataactt------ctcccattttccaaaacttcttcacctgatacagaattatcacatacatttgtt |
94 |
Q |
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||||||||||||||| ||||||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||||||| ||||| ||||||| |
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| T |
7327809 |
catatactctgataaacatttgcttgcttctttataacttaaaacccttcccttttccaaaacttcttcgtctgattcagaattataacatatatttgtt |
7327908 |
T |
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| Q |
95 |
gcaacatgccataaaagaatgctttgatcaaattctacctccaca |
139 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
7327909 |
gcaatatgccataaaataatgctttgatcaaattctacctccaca |
7327953 |
T |
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