View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6883_low_23 (Length: 238)
Name: NF6883_low_23
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6883_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38028365 - 38028143
Alignment:
| Q |
1 |
tctacatggtcctgacttgaatatattccaattgcaatcatcgcaattacttttacgtaaattactggcatggtaaatattaaaactatgtgtctcacca |
100 |
Q |
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| T |
38028365 |
tctacatggtcctgacttgaatatattccaattgcaatcatcgcaattacttttacgtaaattactggcatggtaaatattaaaactatgtgtctcacca |
38028266 |
T |
|
| Q |
101 |
ttccatccaaaggagcaagggctgtcgaaaagaactttctcattgaaactgaaaccatagttatcaccaggatgcagaggatggactccgaaatcatcat |
200 |
Q |
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| T |
38028265 |
ttccatccaaaggagcaagggctgtcgaaaagaactttctcattgaaactgaaaccatagttatcaccaggatgcagaggatggactccgaaatcatcat |
38028166 |
T |
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| Q |
201 |
ccatagttttgcaatgaacaatt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
38028165 |
ccatagttttgcaatgaacaatt |
38028143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30447987 - 30448035
Alignment:
| Q |
1 |
tctacatggtcctgacttgaatatattccaattgcaatcatcgcaatta |
49 |
Q |
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||||||||||||||| | ||||| |||||||||||||| ||| |||||| |
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| T |
30447987 |
tctacatggtcctgattcgaatacattccaattgcaataatcacaatta |
30448035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30459548 - 30459596
Alignment:
| Q |
1 |
tctacatggtcctgacttgaatatattccaattgcaatcatcgcaatta |
49 |
Q |
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||||||||||||||| || |||| |||||||||||||| ||| |||||| |
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| T |
30459548 |
tctacatggtcctgatttaaatacattccaattgcaataatcacaatta |
30459596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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