View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6883_low_26 (Length: 226)

Name: NF6883_low_26
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6883_low_26
NF6883_low_26
[»] chr2 (19 HSPs)
chr2 (17-79)||(40965076-40965138)
chr2 (17-62)||(28108358-28108403)
chr2 (20-65)||(28925834-28925879)
chr2 (17-61)||(30757551-30757595)
chr2 (17-62)||(15859328-15859373)
chr2 (17-62)||(24775791-24775836)
chr2 (174-209)||(20696959-20696994)
chr2 (18-65)||(43950432-43950479)
chr2 (174-207)||(13221965-13221998)
chr2 (20-61)||(23685039-23685080)
chr2 (17-62)||(28301513-28301558)
chr2 (174-211)||(40964945-40964982)
chr2 (174-210)||(314328-314364)
chr2 (17-61)||(435061-435105)
chr2 (17-61)||(5211941-5211985)
chr2 (174-210)||(7649032-7649068)
chr2 (17-45)||(11726705-11726733)
chr2 (17-57)||(13375171-13375211)
chr2 (174-210)||(25604246-25604282)
[»] chr8 (20 HSPs)
chr8 (17-62)||(44790405-44790450)
chr8 (17-61)||(2349430-2349475)
chr8 (17-65)||(39171619-39171667)
chr8 (20-62)||(34133206-34133248)
chr8 (17-62)||(5392128-5392173)
chr8 (17-62)||(12653766-12653811)
chr8 (17-62)||(29615877-29615922)
chr8 (17-62)||(32967260-32967305)
chr8 (17-61)||(38252420-38252465)
chr8 (17-65)||(9014779-9014827)
chr8 (17-65)||(45425561-45425609)
chr8 (174-209)||(14689854-14689889)
chr8 (17-64)||(28802844-28802891)
chr8 (174-208)||(10729098-10729132)
chr8 (174-208)||(38252616-38252650)
chr8 (17-62)||(5962456-5962501)
chr8 (17-62)||(31410591-31410636)
chr8 (174-211)||(44615544-44615581)
chr8 (176-208)||(21587171-21587203)
chr8 (17-61)||(22324938-22324982)
[»] chr5 (18 HSPs)
chr5 (17-62)||(25814443-25814488)
chr5 (17-62)||(41184739-41184784)
chr5 (18-62)||(39060407-39060451)
chr5 (20-62)||(7613786-7613828)
chr5 (175-209)||(36007069-36007103)
chr5 (17-62)||(11099461-11099506)
chr5 (24-65)||(17741160-17741201)
chr5 (17-65)||(20189968-20190017)
chr5 (17-62)||(39008211-39008256)
chr5 (17-65)||(28057814-28057862)
chr5 (17-61)||(35334510-35334554)
chr5 (19-62)||(3725265-3725308)
chr5 (174-208)||(4044656-4044690)
chr5 (174-208)||(6629559-6629593)
chr5 (17-62)||(33988279-33988324)
chr5 (25-62)||(35666964-35667001)
chr5 (18-62)||(5357802-5357846)
chr5 (176-208)||(6610730-6610762)
[»] chr4 (23 HSPs)
chr4 (19-61)||(9093747-9093789)
chr4 (17-62)||(49812308-49812353)
chr4 (17-61)||(17237123-17237167)
chr4 (17-61)||(42367869-42367913)
chr4 (174-208)||(48740416-48740450)
chr4 (20-61)||(1825232-1825273)
chr4 (17-62)||(38977071-38977116)
chr4 (17-61)||(283460-283504)
chr4 (17-61)||(54729467-54729511)
chr4 (174-209)||(20964472-20964507)
chr4 (174-209)||(25390610-25390645)
chr4 (17-60)||(39979861-39979904)
chr4 (174-209)||(42670559-42670594)
chr4 (23-65)||(29550716-29550758)
chr4 (24-62)||(33047571-33047609)
chr4 (174-208)||(39976569-39976603)
chr4 (17-62)||(4360391-4360436)
chr4 (17-62)||(49306666-49306711)
chr4 (30-62)||(8065612-8065644)
chr4 (17-65)||(41203813-41203861)
chr4 (17-69)||(41371275-41371327)
chr4 (176-208)||(41710324-41710356)
chr4 (17-65)||(47787830-47787878)
[»] chr3 (21 HSPs)
chr3 (16-62)||(5245491-5245537)
chr3 (17-62)||(9017880-9017925)
chr3 (17-62)||(33994736-33994781)
chr3 (17-65)||(43639499-43639547)
chr3 (30-65)||(48744335-48744370)
chr3 (17-62)||(32827287-32827332)
chr3 (174-211)||(38600983-38601020)
chr3 (17-62)||(39866536-39866581)
chr3 (17-62)||(54122207-54122252)
chr3 (17-62)||(54493987-54494032)
chr3 (17-62)||(54783042-54783087)
chr3 (17-61)||(26134686-26134730)
chr3 (17-57)||(54845499-54845539)
chr3 (174-209)||(1334953-1334988)
chr3 (19-62)||(41031654-41031697)
chr3 (174-208)||(24619092-24619126)
chr3 (174-208)||(36097834-36097868)
chr3 (17-62)||(2868653-2868698)
chr3 (17-46)||(10855089-10855118)
chr3 (174-210)||(9218038-9218074)
chr3 (17-61)||(49408589-49408633)
[»] chr7 (20 HSPs)
chr7 (17-62)||(30463095-30463140)
chr7 (17-62)||(31581426-31581471)
chr7 (17-62)||(47454083-47454128)
chr7 (23-62)||(29434569-29434608)
chr7 (17-62)||(2846659-2846704)
chr7 (17-62)||(11616641-11616686)
chr7 (17-62)||(23703995-23704040)
chr7 (17-62)||(33584642-33584687)
chr7 (20-61)||(36117742-36117783)
chr7 (17-61)||(5724691-5724734)
chr7 (18-62)||(32776062-32776106)
chr7 (175-210)||(34963994-34964029)
chr7 (174-209)||(37496575-37496610)
chr7 (19-62)||(45890843-45890886)
chr7 (175-208)||(2842225-2842258)
chr7 (17-62)||(18235269-18235314)
chr7 (176-208)||(2846856-2846888)
chr7 (17-65)||(28333247-28333294)
chr7 (176-208)||(29257442-29257474)
chr7 (176-208)||(33774221-33774253)
[»] chr6 (8 HSPs)
chr6 (17-62)||(31265858-31265903)
chr6 (17-61)||(15081503-15081547)
chr6 (174-208)||(34915989-34916023)
chr6 (17-62)||(9755130-9755175)
chr6 (25-61)||(7301071-7301107)
chr6 (17-61)||(30063932-30063976)
chr6 (17-61)||(33109453-33109497)
chr6 (18-62)||(33921453-33921497)
[»] chr1 (28 HSPs)
chr1 (17-62)||(36467179-36467224)
chr1 (17-62)||(52830398-52830443)
chr1 (17-65)||(26756052-26756100)
chr1 (23-65)||(30750007-30750049)
chr1 (23-65)||(30771458-30771500)
chr1 (17-62)||(19532903-19532948)
chr1 (17-62)||(28839418-28839463)
chr1 (17-62)||(32348297-32348342)
chr1 (17-62)||(49494147-49494192)
chr1 (25-62)||(50267430-50267467)
chr1 (18-62)||(11425854-11425898)
chr1 (17-65)||(17724698-17724746)
chr1 (17-65)||(32587841-32587889)
chr1 (17-65)||(48242574-48242622)
chr1 (174-209)||(2886065-2886100)
chr1 (174-209)||(7787567-7787602)
chr1 (18-61)||(34813997-34814040)
chr1 (20-61)||(10370171-10370213)
chr1 (20-62)||(16040156-16040198)
chr1 (17-62)||(8327796-8327841)
chr1 (17-62)||(17342907-17342952)
chr1 (176-209)||(36057796-36057829)
chr1 (176-212)||(17724895-17724931)
chr1 (30-62)||(28277035-28277067)
chr1 (25-61)||(37525120-37525156)
chr1 (17-61)||(49945012-49945056)
chr1 (176-208)||(51849071-51849103)
chr1 (17-65)||(52432388-52432436)
[»] scaffold0321 (1 HSPs)
scaffold0321 (17-61)||(9535-9579)
[»] scaffold0058 (1 HSPs)
scaffold0058 (17-65)||(14532-14580)
[»] scaffold0001 (1 HSPs)
scaffold0001 (176-208)||(394672-394704)


Alignment Details
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 40965138 - 40965076
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatgaattgaaaatgatg 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40965138 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatgaattgaaaatgatg 40965076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 28108358 - 28108403
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  28108358 atgaaggagagagaaaaatagttttaagtgcacttgttaagtattg 28108403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 28925834 - 28925879
Alignment:
Q  20 aaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  28925834 aaggagagagaaaaatagttttaagtgcacttgttaagtattgatg 28925879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 30757551 - 30757595
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  30757551 atgaaggagagagaaaaatagttttaagtgcacttgttaagtatt 30757595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 15859328 - 15859373
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||    
T  15859328 atgaaggagagagaaaaatagttttaagtacttttgttaagtattg 15859373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 24775791 - 24775836
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||    
T  24775791 atgaaggagagagaaaaataattttaagtgcacttgttaagtattg 24775836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 20696959 - 20696994
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtat 209  Q
    ||||||||||||||||||||| ||||||||||||||    
T  20696959 gcaaatgactcagttattatgggacggagggagtat 20696994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 43950432 - 43950479
Alignment:
Q  18 tgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    |||| ||||||||||||||||||||| ||  |||||||||||||||||    
T  43950432 tgaaagagagagaaaaatagttttaaatgtttttgttaagtattgatg 43950479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 13221998 - 13221965
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagt 207  Q
    ||||||||||||||||||||| ||||||||||||    
T  13221998 gcaaatgactcagttattatgggacggagggagt 13221965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 23685080 - 23685039
Alignment:
Q  20 aaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    |||||||||||||| ||||||||||||  |||||||||||||    
T  23685080 aaggagagagaaaattagttttaagtgtttttgttaagtatt 23685039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 28301558 - 28301513
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||| |||||||||| |||||||||||  |||||||||||||    
T  28301558 atgaaggaaagagaaaaatggttttaagtgctcttgttaagtattg 28301513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 40964982 - 40964945
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtatta 211  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  40964982 gcaaatgactcagttattatgggactgagggagtatta 40964945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 314364 - 314328
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtatt 210  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  314364 gcaaatgactcagttattatgggacggggggagtatt 314328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 435061 - 435105
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    ||||| |||||| ||||||||||||||||||| ||||||| ||||    
T  435061 atgaaagagagacaaaaatagttttaagtgcacttgttaaatatt 435105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 5211941 - 5211985
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    |||||| |||| |||||||||||||||||||  ||||||||||||    
T  5211941 atgaagaagagggaaaaatagttttaagtgctcttgttaagtatt 5211985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 7649032 - 7649068
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtatt 210  Q
    |||||||||||||||||||||  ||||||||||||||    
T  7649032 gcaaatgactcagttattatggaacggagggagtatt 7649068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 11726705 - 11726733
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagt 45  Q
    |||||||||||||||||||||||||||||    
T  11726705 atgaaggagagagaaaaatagttttaagt 11726733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 13375171 - 13375211
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaag 57  Q
    |||||||||||||| ||||| ||||||||||| ||||||||    
T  13375171 atgaaggagagagataaataattttaagtgcagttgttaag 13375211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 25604282 - 25604246
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtatt 210  Q
    ||||||||||||||||||||  |||||||||||||||    
T  25604282 gcaaatgactcagttattataggacggagggagtatt 25604246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 44790405 - 44790450
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  44790405 atgaaggagagagaaaaatagttttaagtgcacttgttaagtattg 44790450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 2349475 - 2349430
Alignment:
Q  17 atgaaggagagagaaaaa-tagttttaagtgcatttgttaagtatt 61  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  2349475 atgaaggagagagaaaaaatagttttaagtgcatttgttaagtatt 2349430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 39171667 - 39171619
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||||||    
T  39171667 atgaaggagagagaaaaatggttttaagtacttttgttaagtattgatg 39171619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 34133248 - 34133206
Alignment:
Q  20 aaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||| ||||||||||| |||||||||||||    
T  34133248 aaggagagagaaaaataattttaagtgcacttgttaagtattg 34133206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 5392173 - 5392128
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  5392173 atgaaggagagagaaaaatggttttaagtgcttttgtcaagtattg 5392128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 12653811 - 12653766
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||| |||||||||||||||||||||||| |||||||| |||||    
T  12653811 atgaagtagagagaaaaatagttttaagtgcgtttgttaaatattg 12653766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 29615922 - 29615877
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||||| |||||| |||| |||||||||||||    
T  29615922 atgaaggagagagaaaaataattttaaatgcacttgttaagtattg 29615877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 32967260 - 32967305
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||| ||||||||||||||||||||||||| || ||||||||||    
T  32967260 atgaagaagagagaaaaatagttttaagtgcacttcttaagtattg 32967305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 38252420 - 38252465
Alignment:
Q  17 atgaaggagagagaaaa-atagttttaagtgcatttgttaagtatt 61  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  38252420 atgaaggagagagaaaaaatagttttaagtgcacttgttaagtatt 38252465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 9014827 - 9014779
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    |||||| ||||||||||||  |||||||||| |||||||||||||||||    
T  9014827 atgaagaagagagaaaaatgattttaagtgcttttgttaagtattgatg 9014779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 45425609 - 45425561
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    |||||||||||||| |||| |||||||||||  ||||||||||||||||    
T  45425609 atgaaggagagagacaaatggttttaagtgctcttgttaagtattgatg 45425561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 14689889 - 14689854
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtat 209  Q
    ||||||||||||||||||||| ||||||||||||||    
T  14689889 gcaaatgactcagttattatgggacggagggagtat 14689854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 28802891 - 28802844
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgat 64  Q
    ||||| ||||||||||||| |||||||||||  |||||||||||||||    
T  28802891 atgaaagagagagaaaaatggttttaagtgctcttgttaagtattgat 28802844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 10729098 - 10729132
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagta 208  Q
    ||||||||||||||||||||| |||||||||||||    
T  10729098 gcaaatgactcagttattatgggacggagggagta 10729132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 38252616 - 38252650
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagta 208  Q
    ||||||||||||||||||||| |||||||||||||    
T  38252616 gcaaatgactcagttattatgggacggagggagta 38252650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 5962456 - 5962501
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||| |||||||  ||||||||||| ||||||||||||||    
T  5962456 atgaaggagatagaaaaaacgttttaagtgcttttgttaagtattg 5962501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 31410591 - 31410636
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||| |||||||||||  |||||||| |||||    
T  31410591 atgaaggagagagaaaaacagttttaagtgtttttgttaaatattg 31410636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 44615544 - 44615581
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtatta 211  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  44615544 gcaattgactcggttattatgagacggagggagtatta 44615581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 21587203 - 21587171
Alignment:
Q  176 aaatgactcagttattatgagacggagggagta 208  Q
    ||||||||||||||||||||||||||| |||||    
T  21587203 aaatgactcagttattatgagacggagtgagta 21587171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 22324938 - 22324982
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    |||||||||||||||||||| ||||||||| | ||||||| ||||    
T  22324938 atgaaggagagagaaaaataattttaagtgtacttgttaaatatt 22324982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 25814488 - 25814443
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  25814488 atgaaggagagagaaaaatagttttaagtgcacttgttaagtattg 25814443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 41184784 - 41184739
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||    
T  41184784 atgaaggagaaagaaaaatagttttaagtgcacttgttaagtattg 41184739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 39060407 - 39060451
Alignment:
Q  18 tgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  39060407 tgaaggagagagaaaaatggttttgagtgcatttgttaagtattg 39060451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 7613828 - 7613786
Alignment:
Q  20 aaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  7613828 aaggaaagagaaaaatagttttaagtgcacttgttaagtattg 7613786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 36007069 - 36007103
Alignment:
Q  175 caaatgactcagttattatgagacggagggagtat 209  Q
    |||||||||||||||||||||||||||||||||||    
T  36007069 caaatgactcagttattatgagacggagggagtat 36007103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 11099461 - 11099506
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||    
T  11099461 atgaaagagagagaaaaatagttttaagtgtttttgttaagtattg 11099506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 17741160 - 17741201
Alignment:
Q  24 agagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    |||||||||||||||||| ||||| |||||||||||||||||    
T  17741160 agagagaaaaatagttttgagtgcctttgttaagtattgatg 17741201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 20190017 - 20189968
Alignment:
Q  17 atgaaggagagagaaaaa-tagttttaagtgcatttgttaagtattgatg 65  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| |||||    
T  20190017 atgaaggagagataaaaaatagttttaagtgcatttgttaagtactgatg 20189968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 39008256 - 39008211
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||    
T  39008256 atgaaggagagagaaaaatggttttaagtgctcttgttaagtattg 39008211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 28057814 - 28057862
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    |||||||||||||||||||| |||||| || | ||||||||||||||||    
T  28057814 atgaaggagagagaaaaataattttaaatgtacttgttaagtattgatg 28057862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 35334510 - 35334554
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    |||||||||||||||||||||||||||||||  || |||||||||    
T  35334510 atgaaggagagagaaaaatagttttaagtgctcttattaagtatt 35334554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 3725308 - 3725265
Alignment:
Q  19 gaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||| |||||||||||  |||||||||||||    
T  3725308 gaaggagagagaaaaatggttttaagtgctattgttaagtattg 3725265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 4044656 - 4044690
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagta 208  Q
    ||||||||||||||||||||| |||||||||||||    
T  4044656 gcaaatgactcagttattatgggacggagggagta 4044690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 6629559 - 6629593
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagta 208  Q
    ||||||| |||||||||||||||||||||||||||    
T  6629559 gcaaatggctcagttattatgagacggagggagta 6629593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 33988324 - 33988279
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||| |||||||| ||||||||||  ||||||||||||||    
T  33988324 atgaaggagaaagaaaaatggttttaagtgtttttgttaagtattg 33988279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 35667001 - 35666964
Alignment:
Q  25 gagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  35667001 gagagaaaaatagttttaagtgcttttcttaagtattg 35666964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 5357802 - 5357846
Alignment:
Q  18 tgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||| ||||| ||||  ||||||||||||||    
T  5357802 tgaaggagagagaaaaatggttttgagtgtctttgttaagtattg 5357846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 6610762 - 6610730
Alignment:
Q  176 aaatgactcagttattatgagacggagggagta 208  Q
    ||||||||||||||||||| |||||||||||||    
T  6610762 aaatgactcagttattatgggacggagggagta 6610730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 9093747 - 9093789
Alignment:
Q  19 gaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  9093747 gaaggagagagaaaaatagttttaagtgcacttgttaagtatt 9093789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 49812353 - 49812308
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||    
T  49812353 atgaaggagagaaaaaaatagttttaagtgcacttgttaagtattg 49812308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 17237167 - 17237123
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    ||||||||||||||||||||||||||||||  |||||||||||||    
T  17237167 atgaaggagagagaaaaatagttttaagtgattttgttaagtatt 17237123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 42367913 - 42367869
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||    
T  42367913 atgaatgagagagaaaaatagttttaagtgcacttgttaagtatt 42367869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 48740450 - 48740416
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagta 208  Q
    |||||||||||||||||||||||||||||||||||    
T  48740450 gcaaatgactcagttattatgagacggagggagta 48740416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 1825232 - 1825273
Alignment:
Q  20 aaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  1825232 aaggagatagaaaaatagttttaagtgcacttgttaagtatt 1825273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 38977116 - 38977071
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||| ||||||||||||||||||||||||| || ||||||||||    
T  38977116 atgaagaagagagaaaaatagttttaagtgcacttcttaagtattg 38977071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 283460 - 283504
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||    
T  283460 atgaaggagagagaaaaattgttttaagtgctcttgttaagtatt 283504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 54729467 - 54729511
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    ||||| ||||||||||||||||||||||||  |||||||||||||    
T  54729467 atgaaagagagagaaaaatagttttaagtgtttttgttaagtatt 54729511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 20964472 - 20964507
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtat 209  Q
    ||||||||||||||||||||| ||||||||||||||    
T  20964472 gcaaatgactcagttattatgggacggagggagtat 20964507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 25390645 - 25390610
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtat 209  Q
    ||||||||||||||||||||| ||||||||||||||    
T  25390645 gcaaatgactcagttattatgggacggagggagtat 25390610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 39979904 - 39979861
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtat 60  Q
    |||||| ||| ||||||||||||||||||||| |||||||||||    
T  39979904 atgaagtagaaagaaaaatagttttaagtgcacttgttaagtat 39979861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 42670559 - 42670594
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtat 209  Q
    ||||||||||||||||||||||||||||| ||||||    
T  42670559 gcaaatgactcagttattatgagacggagcgagtat 42670594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 29550716 - 29550758
Alignment:
Q  23 gagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    ||||||||||||||||||| ||||| ||| |||||||||||||    
T  29550716 gagagagaaaaatagttttgagtgccttttttaagtattgatg 29550758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 33047609 - 33047571
Alignment:
Q  24 agagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  33047609 agagagaaaaatggttttaagtgcttttgttaagtattg 33047571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 39976569 - 39976603
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagta 208  Q
    ||||||||||||||||||||||||||||| |||||    
T  39976569 gcaaatgactcagttattatgagacggagtgagta 39976603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 4360391 - 4360436
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||| || |||||||||| ||||||||||| ||||||||||||||    
T  4360391 atgaatgaaagagaaaaatggttttaagtgcttttgttaagtattg 4360436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 49306711 - 49306666
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||| ||||||||||||| |||||||||||  |||||||||||||    
T  49306711 atgaaagagagagaaaaatggttttaagtgctcttgttaagtattg 49306666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 8065644 - 8065612
Alignment:
Q  30 aaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||||| |||||||||||||    
T  8065644 aaaaatagttttaagtgcacttgttaagtattg 8065612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 41203861 - 41203813
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    |||||||||| |||||||| ||||| |||||  ||||||||||||||||    
T  41203861 atgaaggagatagaaaaatggtttttagtgctcttgttaagtattgatg 41203813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 41371275 - 41371327
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatgaatt 69  Q
    ||||||||| || ||||||||||||||||||  |||||||| |||||| ||||    
T  41371275 atgaaggagtgaaaaaaatagttttaagtgctcttgttaagaattgatcaatt 41371327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 41710324 - 41710356
Alignment:
Q  176 aaatgactcagttattatgagacggagggagta 208  Q
    |||||||||||||||||||||||||| ||||||    
T  41710324 aaatgactcagttattatgagacggatggagta 41710356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 47787830 - 47787878
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    |||||| ||||| ||||||||||||||| ||| |||||||||| |||||    
T  47787830 atgaagaagagataaaaatagttttaagggcacttgttaagtactgatg 47787878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 5245537 - 5245491
Alignment:
Q  16 catgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||    
T  5245537 catgaaggagagagaaaaatagttttaagtgctcttgttaagtattg 5245491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 9017925 - 9017880
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||    
T  9017925 atgaaagagagagaaaaatagttttaagtgcttttgttaagtattg 9017880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 33994781 - 33994736
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||    
T  33994781 atgaaggagagagaaaaataattttaagtgcacttgttaagtattg 33994736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 43639499 - 43639547
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||||    
T  43639499 atgaaggagagagaaaaatggttttaagtgctgttgttaagtattgatg 43639547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 48744370 - 48744335
Alignment:
Q  30 aaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    ||||||||||||||||||||||||||||||||||||    
T  48744370 aaaaatagttttaagtgcatttgttaagtattgatg 48744335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 32827287 - 32827332
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||| ||||||||||||||||||| |||||| ||||||    
T  32827287 atgaaggagagaaaaaaatagttttaagtgcacttgttacgtattg 32827332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 38600983 - 38601020
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtatta 211  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  38600983 gcaaatgactcagttattatgggacggagggagtatta 38601020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 39866536 - 39866581
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||| |||||||||||||||||||||  ||||||||||||||    
T  39866536 atgaaggaaagagaaaaatagttttaagtgattttgttaagtattg 39866581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 54122207 - 54122252
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||||    
T  54122207 atgaaggagagagaaaaatagttttaaatgtttttgttaagtattg 54122252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 54494032 - 54493987
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||||    
T  54494032 atgaagaagagagaaatatagttttaagtgcacttgttaagtattg 54493987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 54783087 - 54783042
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||    
T  54783087 atgaatgagagagaaaaatagttttaagtgcacttcttaagtattg 54783042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 26134686 - 26134730
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||    
T  26134686 atgaaggagagagaaaaattgttttaagtgctcttgttaagtatt 26134730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 54845499 - 54845539
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaag 57  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  54845499 atgaaggagagagaaaaatagttttaagtgtttttgttaag 54845539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 1334953 - 1334988
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtat 209  Q
    ||||||||||||||||||||| ||||||||||||||    
T  1334953 gcaaatgactcagttattatgggacggagggagtat 1334988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 41031697 - 41031654
Alignment:
Q  19 gaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||| ||| ||||||||||||||||||||| |||||||||||||    
T  41031697 gaagaagaaagaaaaatagttttaagtgcacttgttaagtattg 41031654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 24619092 - 24619126
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagta 208  Q
    |||||||||||||||| ||||||||||||||||||    
T  24619092 gcaaatgactcagttagtatgagacggagggagta 24619126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 36097834 - 36097868
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagta 208  Q
    ||||||||||||||||||||||||||||| |||||    
T  36097834 gcaaatgactcagttattatgagacggagtgagta 36097868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 2868698 - 2868653
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||||| ||||||||| | ||||||| ||||||    
T  2868698 atgaaggagagagaaaaatggttttaagttcttttgttatgtattg 2868653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 10855118 - 10855089
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtg 46  Q
    ||||||||||||||||||||||||||||||    
T  10855118 atgaaggagagagaaaaatagttttaagtg 10855089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 9218074 - 9218038
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtatt 210  Q
    ||||||||||||||||||| | |||||||||||||||    
T  9218074 gcaaatgactcagttattacgggacggagggagtatt 9218038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 49408633 - 49408589
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    |||||||| |||||||||||||||||||||   ||||||||||||    
T  49408633 atgaaggaaagagaaaaatagttttaagtgttcttgttaagtatt 49408589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 30463140 - 30463095
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||    
T  30463140 atgaatgagagagaaaaatagttttaagtgcacttgttaagtattg 30463095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 31581426 - 31581471
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||    
T  31581426 atgaaggagagataaaaatagttttaagtacatttgttaagtattg 31581471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 47454128 - 47454083
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||    
T  47454128 atgaaggagagagtaaaatagttttaagtgcacttgttaagtattg 47454083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 29434569 - 29434608
Alignment:
Q  23 gagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  29434569 gagagagaaaaatagttttaagtgcttttgttaagtattg 29434608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 2846659 - 2846704
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||| |||||||||||||||||||||||||  |||||||||||||    
T  2846659 atgaacgagagagaaaaatagttttaagtgctcttgttaagtattg 2846704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 11616686 - 11616641
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||    
T  11616686 atgaaggagagagaaaaatggttttaagtgctcttgttaagtattg 11616641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 23704040 - 23703995
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||||||||||||| ||| ||||||| |||||    
T  23704040 atgaaggagagagaaaaatagttttaagcgcacttgttaattattg 23703995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 33584687 - 33584642
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||    
T  33584687 atgaaggagagagaaaaatggttttaagtgctattgttaagtattg 33584642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 36117783 - 36117742
Alignment:
Q  20 aaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  36117783 aaggaaagagaaaaatagttttaagtgcacttgttaagtatt 36117742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 5724691 - 5724734
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  5724691 atgaaggagagagaaaaatagttttaagtgc-cttgttaagtatt 5724734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 32776106 - 32776062
Alignment:
Q  18 tgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||    
T  32776106 tgaaggagagagaaaaatggttttgagtgcctttgttaagtattg 32776062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 34963994 - 34964029
Alignment:
Q  175 caaatgactcagttattatgagacggagggagtatt 210  Q
    ||||||||||||||||||||||||||| ||||||||    
T  34963994 caaatgactcagttattatgagacggatggagtatt 34964029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 37496575 - 37496610
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtat 209  Q
    ||||||||||||||||||||| ||||||||||||||    
T  37496575 gcaaatgactcagttattatgggacggagggagtat 37496610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 45890843 - 45890886
Alignment:
Q  19 gaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||| ||||||| ||| ||||||||||||||    
T  45890843 gaaggagagagaaaaatggttttaaatgcttttgttaagtattg 45890886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 2842225 - 2842258
Alignment:
Q  175 caaatgactcagttattatgagacggagggagta 208  Q
    |||||||||||||||||||||||||||| |||||    
T  2842225 caaatgactcagttattatgagacggagagagta 2842258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 18235314 - 18235269
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||| ||||||| |||||| |||| |||||||||||||    
T  18235314 atgaaggagagaaaaaaataattttaaatgcacttgttaagtattg 18235269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 2846856 - 2846888
Alignment:
Q  176 aaatgactcagttattatgagacggagggagta 208  Q
    ||||||||||||||||||| |||||||||||||    
T  2846856 aaatgactcagttattatgggacggagggagta 2846888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 28333294 - 28333247
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    ||||| ||||||||||||||||||| |||| | ||||||||||||||||    
T  28333294 atgaaagagagagaaaaatagttttgagtg-acttgttaagtattgatg 28333247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 29257474 - 29257442
Alignment:
Q  176 aaatgactcagttattatgagacggagggagta 208  Q
    |||||||||||||||||||||||||| ||||||    
T  29257474 aaatgactcagttattatgagacggatggagta 29257442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 33774221 - 33774253
Alignment:
Q  176 aaatgactcagttattatgagacggagggagta 208  Q
    |||||||||||||||| ||||||||||||||||    
T  33774221 aaatgactcagttattgtgagacggagggagta 33774253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 31265903 - 31265858
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||||||||||||||||  |||||||||||||    
T  31265903 atgaaggagagagaaaaatagttttaagtgctcttgttaagtattg 31265858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 15081547 - 15081503
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||    
T  15081547 atgaaggtgagagaaaaatagttttaagtgcacttgttaagtatt 15081503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 34915989 - 34916023
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagta 208  Q
    ||||||||||||||||||||| |||||||||||||    
T  34915989 gcaaatgactcagttattatgggacggagggagta 34916023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 9755130 - 9755175
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||| |||||||||||||||||||||| ||  ||||||||||||    
T  9755130 atgaagaagagagaaaaatagttttaagttcacgtgttaagtattg 9755175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 7301071 - 7301107
Alignment:
Q  25 gagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    ||||||||||||||||||||||  |||||||||||||    
T  7301071 gagagaaaaatagttttaagtgtgtttgttaagtatt 7301107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 30063932 - 30063976
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    |||||||||| ||||||| |||||||||||| ||| |||||||||    
T  30063932 atgaaggagaaagaaaaaaagttttaagtgcttttattaagtatt 30063976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 33109497 - 33109453
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    ||||| ||||||||||||||||||||| |||| ||||||| ||||    
T  33109497 atgaatgagagagaaaaatagttttaaatgcacttgttaaatatt 33109453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 33921453 - 33921497
Alignment:
Q  18 tgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||| ||||| ||||  ||||||||||||||    
T  33921453 tgaaggagagagaaaaatggttttgagtgtgtttgttaagtattg 33921497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 36467179 - 36467224
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||    
T  36467179 atgaatgagagagaaaaatagttttaagtgcacttgttaagtattg 36467224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 52830398 - 52830443
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||    
T  52830398 atgaaggagagagaaaaataattttgagtgcatttgttaagtattg 52830443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 26756100 - 26756052
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||||||    
T  26756100 atgaatgagagaggaaaatagttttaagtgcacttgttaagtattgatg 26756052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 30750049 - 30750007
Alignment:
Q  23 gagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    ||||||||||||||||||||||||| |||||||| ||||||||    
T  30750049 gagagagaaaaatagttttaagtgcttttgttaaatattgatg 30750007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 30771500 - 30771458
Alignment:
Q  23 gagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    ||||||||||||||||||||||||| |||||||| ||||||||    
T  30771500 gagagagaaaaatagttttaagtgcttttgttaaatattgatg 30771458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 19532903 - 19532948
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||| ||||||||||||||||||||| | |||||||||||||    
T  19532903 atgaaggatagagaaaaatagttttaagtgtacttgttaagtattg 19532948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 28839463 - 28839418
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||||||||||||| |||  |||||||||||||    
T  28839463 atgaaggagagagaaaaatagttttaaatgctcttgttaagtattg 28839418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 32348342 - 32348297
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||    
T  32348342 atgaaggagagagaaaaatggttttaagtgctcttgttaagtattg 32348297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 49494147 - 49494192
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||    
T  49494147 atgaaagagagagaaaaatagttttaagtgcacttgttaaatattg 49494192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 50267430 - 50267467
Alignment:
Q  25 gagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||||||||| |||||||||||||    
T  50267430 gagagaaaaatagttttaagtgcacttgttaagtattg 50267467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 11425854 - 11425898
Alignment:
Q  18 tgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||    
T  11425854 tgaaggagagagaaaaatagttttgagtgtctttgttaagtattg 11425898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 17724698 - 17724746
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    ||||||||||||||||||| |||||||||||  ||||||| ||||||||    
T  17724698 atgaaggagagagaaaaattgttttaagtgctcttgttaattattgatg 17724746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 32587889 - 32587841
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    ||||||| |||||||||||| |||||||||  |||||||||||||||||    
T  32587889 atgaaggtgagagaaaaataattttaagtgtttttgttaagtattgatg 32587841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 48242574 - 48242622
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    ||||||||| || ||||||||||||||||||| ||| ||||||||||||    
T  48242574 atgaaggagggataaaaatagttttaagtgcacttgataagtattgatg 48242622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 2886100 - 2886065
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtat 209  Q
    ||||||||||||||||||||| ||||||||||||||    
T  2886100 gcaaatgactcagttattatgggacggagggagtat 2886065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 7787602 - 7787567
Alignment:
Q  174 gcaaatgactcagttattatgagacggagggagtat 209  Q
    ||||||||||||||||||||| ||||||||||||||    
T  7787602 gcaaatgactcagttattatgggacggagggagtat 7787567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 34814040 - 34813997
Alignment:
Q  18 tgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    |||||||||||||||||||||||||||||   ||||||||||||    
T  34814040 tgaaggagagagaaaaatagttttaagtgttcttgttaagtatt 34813997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 10370171 - 10370213
Alignment:
Q  20 aaggagagagaaaa-atagttttaagtgcatttgttaagtatt 61  Q
    |||||||||||||| |||||||||||||| |||||||||||||    
T  10370171 aaggagagagaaaaaatagttttaagtgcttttgttaagtatt 10370213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 16040198 - 16040156
Alignment:
Q  20 aaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    |||||||||||||||| ||||||||||  ||||||||||||||    
T  16040198 aaggagagagaaaaatggttttaagtgtctttgttaagtattg 16040156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 8327841 - 8327796
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||| |||||||||||||| ||||||||||  |||||||||||||    
T  8327841 atgaatgagagagaaaaataattttaagtgctcttgttaagtattg 8327796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 17342952 - 17342907
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||| ||||||| ||||||||||  ||||||||||||||    
T  17342952 atgaaggagagggaaaaatggttttaagtgtttttgttaagtattg 17342907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 36057796 - 36057829
Alignment:
Q  176 aaatgactcagttattatgagacggagggagtat 209  Q
    ||||||||||||||||||| ||||||||||||||    
T  36057796 aaatgactcagttattatgggacggagggagtat 36057829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 17724895 - 17724931
Alignment:
Q  176 aaatgactcagttattatgagacggagggagtattat 212  Q
    ||||||||||||||||||||||| || ||||||||||    
T  17724895 aaatgactcagttattatgagacagatggagtattat 17724931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 28277035 - 28277067
Alignment:
Q  30 aaaaatagttttaagtgcatttgttaagtattg 62  Q
    ||||||||||||||||||| |||||||||||||    
T  28277035 aaaaatagttttaagtgcacttgttaagtattg 28277067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 37525156 - 37525120
Alignment:
Q  25 gagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  37525156 gagagaaaaatagttttaaatgcacttgttaagtatt 37525120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 49945056 - 49945012
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    |||||| |||||||||||| |||||||||||  ||||||||||||    
T  49945056 atgaagaagagagaaaaatggttttaagtgctcttgttaagtatt 49945012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 51849071 - 51849103
Alignment:
Q  176 aaatgactcagttattatgagacggagggagta 208  Q
    |||||||||||||||||||||||| ||||||||    
T  51849071 aaatgactcagttattatgagacgtagggagta 51849103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 52432436 - 52432388
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    |||||| ||||||||||||  ||||||||||  ||||||||||||||||    
T  52432436 atgaagaagagagaaaaatgattttaagtgctcttgttaagtattgatg 52432388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 9535 - 9579
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtatt 61  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||    
T  9535 atgaaggagagagaaaaatggttttaagtgctcttgttaagtatt 9579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 14580 - 14532
Alignment:
Q  17 atgaaggagagagaaaaatagttttaagtgcatttgttaagtattgatg 65  Q
    ||||||| |||| |||||||||||||| |||| ||| ||||||||||||    
T  14580 atgaaggggagataaaaatagttttaattgcacttgctaagtattgatg 14532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 394704 - 394672
Alignment:
Q  176 aaatgactcagttattatgagacggagggagta 208  Q
    ||||||||||||||||||| |||||||||||||    
T  394704 aaatgactcagttattatgggacggagggagta 394672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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