View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6883_low_3 (Length: 851)
Name: NF6883_low_3
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6883_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 569
Target Start/End: Complemental strand, 2238869 - 2238311
Alignment:
| Q |
16 |
aatatacaatggtacaatttattttccaagttggaatggtaacatatatgcaattaaacaaattgatgggtcacttgtttggaagcaaaacttggagaaa |
115 |
Q |
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| T |
2238869 |
aatatacaatggtacaatttattttccaagctggaatggtaacatatatgcaattaaacaagttgatggatcacttgtttggaagcaaaacttggagaaa |
2238770 |
T |
|
| Q |
116 |
ttgacaggtttgaatacaactggatttataattaatgcaaattggacagtggctagagcaactccaacagtggctgaagatttattgattgttggaattt |
215 |
Q |
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| T |
2238769 |
ttgacaggtttaaatacaactggatttataattaatgcaaattggacattggctagagcaactccaactgtggctgaagatttgttgattgttggaattt |
2238670 |
T |
|
| Q |
216 |
atggacctgctgttgttattggtcttgaaaggagaactggtgagcttgtttggttgactcatttggataatcatcctgcagcagttgttaccatgtctgg |
315 |
Q |
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| T |
2238669 |
atggacctgctgttgttattggtcttgaaaggagaactggtgagcttgtttggttgactcatttggataatcaccctgcaggagttgttaccatgtctgg |
2238570 |
T |
|
| Q |
316 |
aacttattataatgggttagtataattacattctttttctcatgcttcttgatcttctttccaatgttttaagaatcggatcatatcaccaggttcaact |
415 |
Q |
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| T |
2238569 |
aacttattacaatgggttagta-aattacattctcttgctcaagcctcttaatcttctttccaatgttttaaaaatcagattatatcagttggttcaatt |
2238471 |
T |
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| Q |
416 |
ggttgaactaagaaac----ggttcatcggttggtttgattttgattatatcgtaatctaattgaaccgcagttgaattggttgagtcacggttggttca |
511 |
Q |
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| T |
2238470 |
gattgaaataagaatcagctagttcgtcggttggtttgttcttgattatatcgtaatctaattgaaccacaattgaattggttgaatcacagttggttca |
2238371 |
T |
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| Q |
512 |
gctagtttttagttttatttaa--tttgttactttttcacctataattttgtcctctagt |
569 |
Q |
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| T |
2238370 |
actagtttttatttttatttaatttttgttacttattaacttatatttttctcctctagt |
2238311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 2229908 - 2229575
Alignment:
| Q |
16 |
aatatacaatggtacaatttattttccaagttggaatggtaacatatatgcaattaaacaaattgatgggtcacttgtttggaagcaaaacttggagaaa |
115 |
Q |
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| T |
2229908 |
aatatacaatggtacaatttattttccatgctggaatggtaacatatatgcaattaaacaaattgatggatcacttgtttggaagcaaaatttggaggaa |
2229809 |
T |
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| Q |
116 |
ttgacaggtttgaatacaactggatttataattaatgcaaattggacagtggctagagcaactccaacagtggctgaagatttattgattgttggaattt |
215 |
Q |
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| T |
2229808 |
ttgacaggtttaaatgcaactggaattatcaaagctgtaaattggtcagtggctagagcaactccaactgtggctgaagatttattgattgttggaattt |
2229709 |
T |
|
| Q |
216 |
atggacctgctgttgttattggtcttgaaaggagaactggtgagcttgtttggttgactcatttggataatcatcctgcagcagttgttaccatgtctgg |
315 |
Q |
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| T |
2229708 |
atggacctgctgttgttattggtcttgaaaggagaactggtgagcttatttggttgacccatttggataatcatcctgcaggagttattaccatgtctgg |
2229609 |
T |
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| Q |
316 |
aacttattataatgggttagtataattacattct |
349 |
Q |
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| T |
2229608 |
aacttattataatgggttagtataattccattct |
2229575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 670 - 829
Target Start/End: Complemental strand, 2238069 - 2237907
Alignment:
| Q |
670 |
aaagggaagtctcattcaccgtgttcgagaaaaattgcaaatcttgtttggtcactatgtagattttctaccatcaagcggctcatgattaatgcaattt |
769 |
Q |
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| T |
2238069 |
aaagggaagtctcattcattgtcttcgagagaaactgcaaatcttgtttggtccttatgtagattttctaccatcaagtggctcgtgattaatgcaattt |
2237970 |
T |
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| Q |
770 |
gtttgtgatttcgcattatttgtagagatcggaatcc---aagaaaatacttatgatgaatat |
829 |
Q |
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| T |
2237969 |
gtttgtgatttcgccttatttttagagattggaaaccaagaagaaaataattatgatgaatat |
2237907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 437 - 496
Target Start/End: Complemental strand, 2229506 - 2229447
Alignment:
| Q |
437 |
atcggttggtttgattttgattatatcgtaatctaattgaaccgcagttgaattggttga |
496 |
Q |
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| T |
2229506 |
atcgattggtttgatcttgattgtatcgtaatttaattgaaccctagttgaattggttga |
2229447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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