View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6883_low_8 (Length: 429)
Name: NF6883_low_8
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6883_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 417
Target Start/End: Original strand, 28438857 - 28439254
Alignment:
| Q |
20 |
atacgtatattgagagaaacccgataaatagtttaaattgtattacacgcccaaatagaatattaaccaagtggctcaggtgttgtcttcnnnnnnnnnn |
119 |
Q |
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| T |
28438857 |
atacgtatattgagagaaacccgataaatagtttaaattgtattacacgcccaaatagaatattaaccaagtggctcaggtgttgtcttcaaaacaaaac |
28438956 |
T |
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| Q |
120 |
nnnnnntaagtggctcaagtgttataacatccaccaaaatatgaatcgttacgaaaaacacgagtttgatttgtaaatggaacattattgattagaccgt |
219 |
Q |
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| T |
28438957 |
aaaaaataagtggctcaagtgttataacatccaccaaaatatgaatcgttacgaaaaacacgagtttgatttgtaaatggaacattattgattagaccgt |
28439056 |
T |
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| Q |
220 |
tcttatctttgattgtgtgtcttttcctaaaaaccggagagctaacgccaagaaaatatattaacgaagtatatagcccatgtaccatttgcaggaatga |
319 |
Q |
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| T |
28439057 |
tcttatctttgattgtgtgtcttttcctaaaaaccggagagctaacgccaagaaaatatattaacgaagtatatagcccatgtaccatttgcaggaatga |
28439156 |
T |
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| Q |
320 |
taatactccaatctaattgtctacataacagaacatgaacttgtccagtcaatcgatatcttgaaatttaatgtctaacgttgtgtgtgtgaaatatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28439157 |
taatactccaatctaattgtctacataacagaacatgaacttgtccagtcaatcgatatcttgaaatttaatgtctaacgttgtgtgtgtgaaatatt |
28439254 |
T |
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