View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6883_low_9 (Length: 343)
Name: NF6883_low_9
Description: NF6883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6883_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 101 - 321
Target Start/End: Original strand, 14249834 - 14250054
Alignment:
| Q |
101 |
taattcatatctatatatactaaaaacatgaataaagtagaaaacacggaattccccggttcaacgatcttcatcatctccacgaccagaatttccattc |
200 |
Q |
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| T |
14249834 |
taattcatatctatatatactaaaaacatgaataaagtacaaaacaccgaattccccgtttcaacgatcttcatcatctccacgaccagaatttccattc |
14249933 |
T |
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| Q |
201 |
ccaccagacaatgaagccaacaaattcagatgaccaggaagataattccctaacctcgccgcggaagcttcacccatagagccttgttgctgctggtgat |
300 |
Q |
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| T |
14249934 |
ccaccagacaatgaagccaacaaattcagatgaccaggaagataattccctaacctcgccgcggaagcttcacccatagagccttgttgctgctggtgat |
14250033 |
T |
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| Q |
301 |
gctggtggtggtggtgctgtt |
321 |
Q |
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| T |
14250034 |
gctgctggtggtggtgctgtt |
14250054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 279
Target Start/End: Complemental strand, 51615467 - 51615349
Alignment:
| Q |
161 |
tcaacgatcttcatcatctccacgaccagaatttccattcccaccagacaatgaagccaacaaattcagatgaccaggaagataattccctaacctcgcc |
260 |
Q |
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| T |
51615467 |
tcaatgatgttcatcatctctccgaccagaatttccatgtccaccagacaacgaagcaagcaaattgagatgaccaggaagataattcccaactctagca |
51615368 |
T |
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| Q |
261 |
gcggaagcttcacccatag |
279 |
Q |
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| T |
51615367 |
gctgaagcttcacccatag |
51615349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14249736 - 14249782
Alignment:
| Q |
1 |
aaaataacaataacctaaccctaatttgactaacaaatattctactt |
47 |
Q |
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| T |
14249736 |
aaaataacaataacctaaccctaatttgactaacaaatattctactt |
14249782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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