View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6884_high_2 (Length: 374)
Name: NF6884_high_2
Description: NF6884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6884_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 37545260 - 37544897
Alignment:
| Q |
1 |
tcaaccattacataaaggttcatcattcaaccataatttattaaagtttagatacacatgataataataaacaaatggttttatcttaaaacttgttttc |
100 |
Q |
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| T |
37545260 |
tcaaccattacataaaggttcatcattcaatcataatctattaaagtttagatacacatgataataataaacaaagtgttttatcttaaaacttgttttc |
37545161 |
T |
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| Q |
101 |
aatttcaagcctttaaaaatgttaccttatggttgttggatcacaccttgaacctcagaggcgttaaagtcggatccttcacttatgggtgaaa------ |
194 |
Q |
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| T |
37545160 |
aatttcaagcatttaaaaatgttaccttatggttgttggatcacactttgaacctcagaggcgttaaagtcggatccttcacttatgggtgaaactaggt |
37545061 |
T |
|
| Q |
195 |
ttatatagataaacttaggttgcaaacatgcctcacacatgattctaattaatgcattgacaccatttgattggctatctatgcgccttgagcgtaggat |
294 |
Q |
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| T |
37545060 |
ttatatagataaacttaggttgcaaacacgcctcacacatgattctaattaatgcattgacaccatttgattgactatttatgcgccttgagcgtgggat |
37544961 |
T |
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| Q |
295 |
tatctgtcaacgcataatgatgagagattagggaattttgtgtcacatgtggctttatctcaca |
358 |
Q |
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| T |
37544960 |
tatctgccaatgcacaatgatgagagataagggaattttgtgtcacatgtggctttatctcaca |
37544897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 1628668 - 1628730
Alignment:
| Q |
2 |
caaccattacataaaggttcatcattcaaccataatttattaaagtttagatacacatgataa |
64 |
Q |
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||||||||||| ||| ||||||||||||| | |||||||| ||||||||| |||||||||||| |
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| T |
1628668 |
caaccattacaaaaatgttcatcattcaatcctaatttatgaaagtttagttacacatgataa |
1628730 |
T |
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