View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6884_high_4 (Length: 205)
Name: NF6884_high_4
Description: NF6884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6884_high_4 |
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| [»] scaffold0119 (1 HSPs) |
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Alignment Details
Target: scaffold0119 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 20898 - 21089
Alignment:
| Q |
1 |
agaaagagcattaatatgctctttaacatttaccaacaagtttggagcatatcaagcattaatattcaacacttgagaaaatatgcacatatcaagcatc |
100 |
Q |
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| T |
20898 |
agaaagagcattaatatgctctttaacatttaccaacaaatttggagcatatcaagcattaatattcaacacttgagaaaatatgcacatatcaagcatc |
20997 |
T |
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| Q |
101 |
tctttttaacataataacgctgatttttctttaagaaatcaaataaaaattaattaataatagagagaaatcgatgctcagaaacaaacaaa |
192 |
Q |
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| T |
20998 |
tctttttaacataataacactgatttttctttaagaaatcaaataaaaattaattaataatagagagaaatcgatgctcagaaacaaacaaa |
21089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 1290424 - 1290292
Alignment:
| Q |
60 |
taatattcaacacttgagaaaatatgcacatatcaagcatctctttttaacataataacgctgatttttctttaagaaatcaaataaaaattaattaata |
159 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1290424 |
taatattcaacacttgggaaaatatgcacatatcaagcatctctttttaacataataacactgatttttctttaagaaatcaaataaaaattaattaata |
1290325 |
T |
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| Q |
160 |
atagagagaaatcgatgctcagaaacaaacaaa |
192 |
Q |
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| T |
1290324 |
atagagagaaatcgatgctcagaaacaaacaaa |
1290292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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