View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6884_low_1 (Length: 486)
Name: NF6884_low_1
Description: NF6884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6884_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Complemental strand, 41582812 - 41582353
Alignment:
| Q |
18 |
atcatttactagccttaagctataaattggttcactgttgttccaaattgtcaaattaatggtttcttcctgtccaagatactttgtccatctccttacc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41582812 |
atcatttactagccttaagctataaattggttcactgttgttccaaattgtcaaattaacggtttcttcctgtccaagatactttgtccatctccttacc |
41582713 |
T |
|
| Q |
118 |
acccactacaaaagaagtaataacatccttaattggatgctaacaagtctggtaaatagcaaagtttctgttgctcactacattgtcagtttaatgaaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41582712 |
acccactacaaaagaagtaataacatccttaattggatgctaacaagtctggtaaatagcaaagtttctgttgctcactacattgtcagtttaatgaaga |
41582613 |
T |
|
| Q |
218 |
aagtatctttttggctggacactcaattatccatcataagacgggccgtgcctgcccttctgggatttcaactacggaacagaagtactgtgaacaaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41582612 |
aagtatctttttggctggacactcaattatccatcataagacgggccgtgcctgcccttctgggatttcaactacggaacagaagtactgtgaacaaaat |
41582513 |
T |
|
| Q |
318 |
gtccatatccnnnnnnncaattaatattatgttaactaatgaggtgtaggattttgtacatggaattttgaaatttaaatcagtcatagttttctgttag |
417 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41582512 |
gtccatatccaaaaaaacaattaatattatgttaactaatgaggtgtaggattttgtacatggaattttgaaatttaaatcagtcatagttttctgttag |
41582413 |
T |
|
| Q |
418 |
catgatactgaagtagaccacaataat-aaaaaagtgatttttcttatttgccacaggtt |
476 |
Q |
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| T |
41582412 |
catgatactgaagtagaccacaataataaaaaaagtgatttttcttatttgccactggtt |
41582353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 41979324 - 41979439
Alignment:
| Q |
20 |
catttactagccttaagctataaattggttcactgttgttccaaattgtcaaattaatggtttcttcctgtccaagatactttgtccatctccttaccac |
119 |
Q |
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||||||||||||||||||||||| | |||||| |||||||||| || ||| ||||||| ||||||||| ||||||||||||||||| |||||||| | |
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| T |
41979324 |
catttactagccttaagctataactcggttcaatgttgttccatatcatcagtttaatggcttcttcctggccaagatactttgtccacctccttacgat |
41979423 |
T |
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| Q |
120 |
ccactacaaaagaagt |
135 |
Q |
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|||||||||||||||| |
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| T |
41979424 |
ccactacaaaagaagt |
41979439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 41979468 - 41979523
Alignment:
| Q |
143 |
tccttaattggatgctaacaagtctggtaaatagcaaagtttctgttgctcactac |
198 |
Q |
| |
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||||||||| |||||||||||||||||| |||||||||||||| ||| || ||||| |
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| T |
41979468 |
tccttaatttgatgctaacaagtctggtgaatagcaaagtttcagttactaactac |
41979523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 1221826 - 1221711
Alignment:
| Q |
20 |
catttactagccttaagctataaattggttcactgttgttccaaattgtcaaattaatggtttcttcctgtccaagatactttgtccatctccttaccac |
119 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||| || |||| ||||||| |||||||| ||||||||||||||||| |||||||| | |
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| T |
1221826 |
catttactagccttaagctataactcggttcactgttgttccatatcatcaatttaatggcttcttccttgccaagatactttgtccacctccttacgat |
1221727 |
T |
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| Q |
120 |
ccactacaaaagaagt |
135 |
Q |
| |
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|||||||||||||||| |
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| T |
1221726 |
ccactacaaaagaagt |
1221711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 1221682 - 1221627
Alignment:
| Q |
143 |
tccttaattggatgctaacaagtctggtaaatagcaaagtttctgttgctcactac |
198 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||| ||| || ||||| |
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| T |
1221682 |
tccttaatttgatgctaacaagtctggtgaatagcaaagtttcagttactaactac |
1221627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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