View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6884_low_6 (Length: 266)
Name: NF6884_low_6
Description: NF6884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6884_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 34927880 - 34928114
Alignment:
| Q |
13 |
aatatacaataagaaaaacgattttattcctccaacaactttttaaaaaccgatcacgtccataagtattcatcaagacaggnnnnnnnntgtattatcc |
112 |
Q |
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| T |
34927880 |
aatatacaataagaaaaacaattttattcctccaacaactttttaaaaaccaatcacgtccataagtatccatcgagacaggaaaaaaa-tgtattatcc |
34927978 |
T |
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| Q |
113 |
cgtccaaatgtctacttctggacggggtcgattttaaagaatcatgagagtaagaaaatggttcctatataatatgatgtgggtgtagagaacataaaga |
212 |
Q |
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| T |
34927979 |
catccaaatgtctacttctggacggggtcgattttaaagaatcatgagagtaagaaaatggttcctatataatatgatatgggtgcagagaacataaaga |
34928078 |
T |
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| Q |
213 |
tgcagggggtcccaagtatataagatatgcaaagaag |
249 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
34928079 |
tgca-ggggtcccaagtatataagatatgcaaagaag |
34928114 |
T |
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