View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6884_low_7 (Length: 232)

Name: NF6884_low_7
Description: NF6884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6884_low_7
NF6884_low_7
[»] scaffold0211 (1 HSPs)
scaffold0211 (55-209)||(20301-20455)
[»] chr5 (2 HSPs)
chr5 (55-209)||(9023052-9023206)
chr5 (128-209)||(32259157-32259237)
[»] chr4 (2 HSPs)
chr4 (55-209)||(312399-312552)
chr4 (55-209)||(6552222-6552376)
[»] chr8 (4 HSPs)
chr8 (55-209)||(41528704-41528858)
chr8 (65-209)||(36754890-36755033)
chr8 (112-209)||(16221618-16221715)
chr8 (152-209)||(40114218-40114275)
[»] scaffold0114 (1 HSPs)
scaffold0114 (79-209)||(34736-34866)
[»] chr3 (3 HSPs)
chr3 (55-209)||(50239577-50239731)
chr3 (1-30)||(48902722-48902751)
chr3 (1-30)||(48904277-48904306)
[»] scaffold0284 (1 HSPs)
scaffold0284 (95-208)||(2708-2821)
[»] chr7 (2 HSPs)
chr7 (112-209)||(7944852-7944949)
chr7 (55-108)||(7945240-7945293)
[»] chr6 (2 HSPs)
chr6 (112-208)||(14211349-14211445)
chr6 (124-175)||(20873769-20873820)
[»] chr1 (4 HSPs)
chr1 (112-209)||(45920379-45920476)
chr1 (112-209)||(49878308-49878405)
chr1 (55-108)||(45920028-45920081)
chr1 (55-108)||(49879924-49879977)
[»] scaffold1737 (1 HSPs)
scaffold1737 (124-173)||(102-151)


Alignment Details
Target: scaffold0211 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 55 - 209
Target Start/End: Original strand, 20301 - 20455
Alignment:
Q  55 tagggaaggacatgtgaggttttagccccacatagccttaacatagatccgcccttgatttcatacaaagtgaaatttttactaatacttgacataatat 154  Q
    ||||||||| |||||| || || |||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| |||||||| |||||    
T  20301 tagggaagggcatgtggggcttgagccccacatagccctaacatagatccgcccctgatttcatataaagtgaaatttttactaacacttgacacaatat 20400  T
Q  155 ctgtgttccaccaccaagaacctctcacccgcaatgttaaacataaataacatac 209  Q
    |||||||| |||||||||||| |||| ||||||||||||||||||||||||||||    
T  20401 ctgtgttctaccaccaagaacttctcccccgcaatgttaaacataaataacatac 20455  T

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Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 55 - 209
Target Start/End: Complemental strand, 9023206 - 9023052
Alignment:
Q  55 tagggaaggacatgtgaggttttagccccacatagccttaacatagatccgcccttgatttcatacaaagtgaaatttttactaatacttgacataatat 154  Q
    ||||||||| |||||| || |  |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||    
T  9023206 tagggaagggcatgtggggctaaagccccacatagccctaacatagatccgcccctgatttcatacaaagtgaaatttttactaacacttgacacaatat 9023107  T
Q  155 ctgtgttccaccaccaagaacctctcacccgcaatgttaaacataaataacatac 209  Q
     |||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  9023106 ttgtgttccaccaccaagaacttctcccccgcaatgttaaacataaataacatac 9023052  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 32259157 - 32259237
Alignment:
Q  128 aatttttactaatacttgacataatatctgtgttccaccaccaagaacctctcacccgcaatgttaaacataaataacatac 209  Q
    |||| ||||||| |||| ||| |||||||||||||||||||||| ||| |||| | ||||||||||||||||||||||||||    
T  32259157 aattattactaacactt-acacaatatctgtgttccaccaccaaaaacttctccctcgcaatgttaaacataaataacatac 32259237  T

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Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 55 - 209
Target Start/End: Complemental strand, 312552 - 312399
Alignment:
Q  55 tagggaaggacatgtgaggttttagccccacatagccttaacatagatccgcccttgatttcatacaaagtgaaatttttactaatacttgacataatat 154  Q
    ||||||||| |||||| || |||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||||||||||| |||||||| |||||    
T  312552 tagggaagggcatgtggggctttagccccacatagcct-aacatagatccacccctcatttcatacaaagtgaaatttttactaacacttgacacaatat 312454  T
Q  155 ctgtgttccaccaccaagaacctctcacccgcaatgttaaacataaataacatac 209  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  312453 ctgtgttccaccaccaagaacttctcccccgcaatgttaaacataaataacatac 312399  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 55 - 209
Target Start/End: Complemental strand, 6552376 - 6552222
Alignment:
Q  55 tagggaaggacatgtgaggttttagccccacatagccttaacatagatccgcccttgatttcatacaaagtgaaatttttactaatacttgacataatat 154  Q
    ||||||||| |||||| || |||||||||||| |||| |||||||||||||||| || |||||||||||||||||||||||| || |||||||| |||||    
T  6552376 tagggaagggcatgtggggctttagccccacaaagccctaacatagatccgcccatg-tttcatacaaagtgaaatttttacaaacacttgacacaatat 6552278  T
Q  155 ctgtgttcca-ccaccaagaacctctcacccgcaatgttaaacataaataacatac 209  Q
    |||||||||| ||||||||||| |||| || |||||||||||||||||||||||||    
T  6552277 ctgtgttccacccaccaagaacttctcccctgcaatgttaaacataaataacatac 6552222  T

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Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 55 - 209
Target Start/End: Original strand, 41528704 - 41528858
Alignment:
Q  55 tagggaaggacatgtgaggttttagccccacatagccttaacatagatccgcccttgatttcatacaaagtgaaatttttactaatacttgacataatat 154  Q
    ||||||||| |||||  || ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||    
T  41528704 tagggaagggcatgtagggctttagccccacatagtcctaacatagatccgccattgatttcatacaaagtgaaatttttactaacacttgacacaatat 41528803  T
Q  155 ctgtgttccaccaccaagaacctctcacccgcaatgttaaacataaataacatac 209  Q
    ||||||||||||||||||||| |||| |||||||| ||| |||||||||||||||    
T  41528804 ctgtgttccaccaccaagaacttctcccccgcaatattatacataaataacatac 41528858  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 65 - 209
Target Start/End: Original strand, 36754890 - 36755033
Alignment:
Q  65 catgtgaggttttagccccacatagccttaacatagatccgcccttgatttcatacaaagtgaaatttttactaatacttgacataatatctgtgttcca 164  Q
    |||||| || ||||||||||||||| | ||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||  ||||||||||||||    
T  36754890 catgtggggctttagccccacatagtcctaacatagatccgtccttgatttcatacaaagtaaaatttttactaacacttgacacgatatctgtgttcca 36754989  T
Q  165 ccaccaagaacctctcacccgcaatgttaaacataaataacatac 209  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||    
T  36754990 ccaccaagaacttctc-cccgcaatgttaaacataaataacatac 36755033  T

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Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 16221618 - 16221715
Alignment:
Q  112 atttcatacaaagtgaaatttttactaatacttgacataatatctgtgttccaccaccaagaacctctcacccgcaatgttaaacataaataacatac 209  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||  ||||||||||| |||| ||| ||||||||||||||||||||||||    
T  16221618 atttcatacaaagtgaaatttttactaacacttgacacaatatctgtgttctgccaccaagaacttctcccccacaatgttaaacataaataacatac 16221715  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 40114218 - 40114275
Alignment:
Q  152 tatctgtgttccaccaccaagaacctctcacccgcaatgttaaacataaataacatac 209  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||    
T  40114218 tatctgtgttccaccaccaagaacttctcccccacaatgttaaacataaataacatac 40114275  T

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Target: scaffold0114 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 34866 - 34736
Alignment:
Q  79 gccccacatagccttaacatagatccgcccttgatttcatacaaagtgaaatttttactaatacttgacataatatctgtgttccaccaccaagaacctc 178  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||| ||    
T  34866 gccccacatagccctaacatagatccgcccctgatttcatacaaagtgaaacttttactaacacttgacacaatatttgtgttccaccaccaagaacttc 34767  T
Q  179 tcacccgcaatgttaaacataaataacatac 209  Q
    || ||||||||||||||||||||||||||||    
T  34766 tcccccgcaatgttaaacataaataacatac 34736  T

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Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 55 - 209
Target Start/End: Complemental strand, 50239731 - 50239577
Alignment:
Q  55 tagggaaggacatgtgaggttttagccccacatagccttaacatagatccgcccttgatttcatacaaagtgaaatttttactaatacttgacataatat 154  Q
    ||||||||| |||||| || ||||||| ||||||||| ||||||| |||| ||  |||||||||||||||||||||||||||||| |||||||| |||||    
T  50239731 tagggaagggcatgtggggctttagcctcacatagccctaacatatatccaccgctgatttcatacaaagtgaaatttttactaacacttgacacaatat 50239632  T
Q  155 ctgtgttccaccaccaagaacctctcacccgcaatgttaaacataaataacatac 209  Q
     |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  50239631 ttgtgttccaccatcaagaacttctcccccgcaatgttaaacataaataacatac 50239577  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 48902722 - 48902751
Alignment:
Q  1 ttataattagggacggaggtagtattacca 30  Q
    ||||||||||||||||||||||||||||||    
T  48902722 ttataattagggacggaggtagtattacca 48902751  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 48904277 - 48904306
Alignment:
Q  1 ttataattagggacggaggtagtattacca 30  Q
    ||||||||||||||||||||||||||||||    
T  48904277 ttataattagggacggaggtagtattacca 48904306  T

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Target: scaffold0284 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 2708 - 2821
Alignment:
Q  95 acatagatccgcccttgatttcatacaaagtgaaatttttactaatacttgacataatatctgtgttccaccaccaagaacctctcacccgcaatgttaa 194  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |||||||||||||    
T  2708 acatagatccgcccctgatttcatacaaagtgaaatttttactaacacttgacacaatatctgtgttccaccaccaagaacttctcccccgcaatgttaa 2807  T
Q  195 acataaataacata 208  Q
    ||||||||||||||    
T  2808 acataaataacata 2821  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 7944949 - 7944852
Alignment:
Q  112 atttcatacaaagtgaaatttttactaatacttgacataatatctgtgttccaccaccaagaacctctcacccgcaatgttaaacataaataacatac 209  Q
    ||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  7944949 atttcatacaaagtgaaatttttaccaacacttgacacaatatctgtgttccaccaccaagaacttctcccccgcaatgttaaacataaataacatac 7944852  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 7945293 - 7945240
Alignment:
Q  55 tagggaaggacatgtgaggttttagccccacatagccttaacatagatccgccc 108  Q
    |||||||||||||| | || ||||||||||||||||| ||||||||||| ||||    
T  7945293 tagggaaggacatgcgggggtttagccccacatagccctaacatagatctgccc 7945240  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 14211349 - 14211445
Alignment:
Q  112 atttcatacaaagtgaaatttttactaatacttgacataatatctgtgttccaccaccaagaacctctcacccgcaatgttaaacataaataacata 208  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| | |||||||| ||||||||||||||||    
T  14211349 atttcatacaaagtgaaatttttactaacacttgacataatatatgtgttccaccaccaagaacttctccctcgcaatgtaaaacataaataacata 14211445  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 20873820 - 20873769
Alignment:
Q  124 gtgaaatttttactaatacttgacataatatctgtgttccaccaccaagaac 175  Q
    |||||||||||||| | |||||||| | |||||||||||| |||||||||||    
T  20873820 gtgaaatttttactcacacttgacacagtatctgtgttcccccaccaagaac 20873769  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 45920379 - 45920476
Alignment:
Q  112 atttcatacaaagtgaaatttttactaatacttgacataatatctgtgttccaccaccaagaacctctcacccgcaatgttaaacataaataacatac 209  Q
    ||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||  | ||||||||||||||||||||||||||    
T  45920379 atttcgtacaaagtgaaatttttactaacacttgacacaatatatgtgttccaccaccaagaacttcttcctcgcaatgttaaacataaataacatac 45920476  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 49878405 - 49878308
Alignment:
Q  112 atttcatacaaagtgaaatttttactaatacttgacataatatctgtgttccaccaccaagaacctctcacccgcaatgttaaacataaataacatac 209  Q
    |||||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||| ||||  || ||||||||||||||||||||||||    
T  49878405 atttcatacaaagtgaaatttttactaacacttgacacaatatttgtgttccactaccaagaacttctcctccacaatgttaaacataaataacatac 49878308  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 45920028 - 45920081
Alignment:
Q  55 tagggaaggacatgtgaggttttagccccacatagccttaacatagatccgccc 108  Q
    ||||||||| |||||| || ||||||||||||||||  ||||||||||||||||    
T  45920028 tagggaagggcatgtggggatttagccccacatagctctaacatagatccgccc 45920081  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 49879977 - 49879924
Alignment:
Q  55 tagggaaggacatgtgaggttttagccccacatagccttaacatagatccgccc 108  Q
    ||||||||  |||||| || ||||||||||||||||| ||||||||||||||||    
T  49879977 tagggaagagcatgtggggctttagccccacatagccctaacatagatccgccc 49879924  T

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Target: scaffold1737 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1737
Description:

Target: scaffold1737; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 151 - 102
Alignment:
Q  124 gtgaaatttttactaatacttgacataatatctgtgttccaccaccaaga 173  Q
    |||||||||||||| | |||||||| | |||||||||||| |||||||||    
T  151 gtgaaatttttactcacacttgacacagtatctgtgttcccccaccaaga 102  T

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