View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6885_high_2 (Length: 496)
Name: NF6885_high_2
Description: NF6885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6885_high_2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 11 - 496
Target Start/End: Original strand, 31437706 - 31438189
Alignment:
| Q |
11 |
cataggataccaaccaagttatgcttggaggagcatcatgtgtggcagagaagtactagaaaagggcagcagatgggtggtgggtaatggaaaaagtatc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31437706 |
cataggataccaaccaagttatgcttggaggagcatcatgtgtggcagagaagtactagaaaagggcagcagatgggtggtgggtaatggaaaaagtatc |
31437805 |
T |
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| Q |
111 |
aaaatttggcatgacaagtggttccccaaccaaacaaatttcaaagttcatggcccggtgcaaaatctcccctcaacagccactgttagtgatcttattg |
210 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31437806 |
gaaatttggcatgacaagtggctccccaaccaaacaaatttcaaagttcatggcccggtgcaaaatctcccctcaacagccactgttagtgatcttattg |
31437905 |
T |
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| Q |
211 |
atttagatacgtacaaagaattggaatagaggtctcattgcatcatgtttcaatcagtttgaggcttcccaagtcacaaatatccaactatcctttagac |
310 |
Q |
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|| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31437906 |
atgtaga----tacaaagaattggaatagagatctcattgcatcatgtttcaatcagtttgaggcttcccaagtcacaaatatccaactatcctttagac |
31438001 |
T |
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| Q |
311 |
tcccagatgacagaatcatttggcattgggagaaagatggaatttactc--tgaagtcagcctaccaccttctaaccgaggaaaatgtgagacaggttcc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31438002 |
tcccagatgacagaatcatttggcattgggagaaagatggaatttactctgtgaagtcagcctaccaccttctaaccgaggaaaatgtgagacagattcc |
31438101 |
T |
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| Q |
409 |
aagctcatcctctttgttgaatagcaaactctggaaagcaatatggaaagctccggtacccaacaaaatctgaaacttcctatggaga |
496 |
Q |
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| T |
31438102 |
aagctcatcctctttgttgaatagcaaactctggaaagcaatatggaaagctccggtacccaacaaaatccgaaacttcctatggaga |
31438189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 11 - 496
Target Start/End: Original strand, 31192711 - 31193193
Alignment:
| Q |
11 |
cataggataccaaccaagttatgcttggaggagcatcatgtgtggcagagaagtactagaaaagggcagcagatgggtggtgggtaatggaaaaagtatc |
110 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |
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| T |
31192711 |
cataggataccaaccaagctatgcttggaggagcatcatgtgtggcagagaagtactagaaaagggcaccagatgggtggtgggtaat--acaaagtatc |
31192808 |
T |
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| Q |
111 |
aaaatttggcatgacaagtggttccccaaccaaacaaatttcaaagttcatggcccggtgcaaaatctcccctcaacagccactgttagtgatcttattg |
210 |
Q |
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||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||| |
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| T |
31192809 |
aaaatttggcatgacaactggctccctgaccaaacaaatttcaaagttcatggcccggtgcaaaatctcccctcaacaaccattgttagggatcttattg |
31192908 |
T |
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| Q |
211 |
atttagatacgtacaaagaattggaatagaggtctcattgcatcatgtttcaatcagtttgaggcttcccaagtcacaaatatccaactatcctttagac |
310 |
Q |
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|||||||||| |||||| ||||| |||| |||||||| ||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
31192909 |
atttagatac----aaagaaatggaagagagacctcattgcgtcatggttcaaccagtttgaggcttcccaaatcacaaaaatccaactatcctttagac |
31193004 |
T |
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| Q |
311 |
tcccagatgacagaatcatttggcattgggagaaagatggaatttac--tctgaagtcagcctaccaccttctaaccgaggaaaatgtgagacaggttcc |
408 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||| |||| |||||||| |||| |||||| ||| ||||||||||||| |
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| T |
31193005 |
tcccagatgacagaatcatttggcattaggagaaagatggaatctactatgtgaagacagcataccacctactaatcgaggagaatatgagacaggttcc |
31193104 |
T |
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| Q |
409 |
aagctcatcctctttgttgaatagcaaactctggaaagcaatatggaaagctccggtacccaacaaaa-tctgaaacttcctatggaga |
496 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||| ||| | || || |||| || |||||||||||||||| |
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| T |
31193105 |
gagctcatcatctttgttgaatagaaaactctggaaagcaatatggaaagccccgatgccgaaaaaaattccaaaacttcctatggaga |
31193193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 29176057 - 29176020
Alignment:
| Q |
324 |
aatcatttggcattgggagaaagatggaatttactctg |
361 |
Q |
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||||||||||||||||||||| ||||| |||||||||| |
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| T |
29176057 |
aatcatttggcattgggagaaggatgggatttactctg |
29176020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 13523237 - 13523200
Alignment:
| Q |
324 |
aatcatttggcattgggagaaagatggaatttactctg |
361 |
Q |
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||||||||||||||||||||| ||||| |||||||||| |
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| T |
13523237 |
aatcatttggcattgggagaaggatgggatttactctg |
13523200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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