View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6885_low_1 (Length: 290)
Name: NF6885_low_1
Description: NF6885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6885_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 32770433 - 32770152
Alignment:
| Q |
1 |
cttaacatcgtaccattgtccatctctagaggcttgaagaccctgaacatcatttgggacaagaagcgtgataaaacacatgtctgaatgagctggaaca |
100 |
Q |
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| T |
32770433 |
cttaacatcgtaccattgtccatctctagaggcttgaagaccttgaacatcatttgggacaagaagcgtgataaaacacatgtctgaatgagctggaaca |
32770334 |
T |
|
| Q |
101 |
ccaagaacaagatcaggacaggggcaaggtgggtaatagttgatctttaacaagtgaaccatgttatcaccccctgcatactcctttagctcatgacctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32770333 |
ccaagaacaagatcaggacaggggcaaggtgggtaatagttgatctttaacaagtgaaccatgttatcaccccctgcatactcctttagctcatgacctt |
32770234 |
T |
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| Q |
201 |
caagccctaaccctattgacaagtttttacacaacttgtctacaaccccatgtaggtgtttgccgtattcctcgttcatctc |
282 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32770233 |
caagccctaaccctattgacaagtttttgaacaacttgtctacaaccccatgtaggtgtttgccgtattcctcgttgatctc |
32770152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 24400532 - 24400375
Alignment:
| Q |
1 |
cttaacatcgtaccattgtccatctctagaggcttgaagaccctgaacatcatttgggacaagaagcgtgataaaacacatgtctgaatgagctggaaca |
100 |
Q |
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||||||||| |||||||| |||||||||||||||||||| ||||| || ||||| ||||| | || || | |||| |||| |||| || | || ||| |
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| T |
24400532 |
cttaacatcataccattgaccatctctagaggcttgaaggccctgcacttcattagggaccaaaatggtaagaaaagacatatctgtgtgtggaggcaca |
24400433 |
T |
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| Q |
101 |
ccaagaacaagatcaggacaggggcaaggtgggtaatagttgatctttaacaagtgaa |
158 |
Q |
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| T |
24400432 |
cctagaacaagatcaggaactggacatggtgggtaatagttgattttcaacatgtgaa |
24400375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 24407346 - 24407203
Alignment:
| Q |
1 |
cttaacatcgtaccattgtccatctctagaggcttgaagaccctgaacatcatttgggacaagaagcgtgataaaacacatgtctgaatgagctggaaca |
100 |
Q |
| |
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||||||||| |||||||| ||||||||||||||||||||||||| || ||||| || | ||||| || ||| ||||||| |||| || | ||| ||| |
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| T |
24407346 |
cttaacatcataccattgaccatctctagaggcttgaagaccctccacttcattgggtatgagaagggtaatataacacatatctgtgtgtggtggcaca |
24407247 |
T |
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| Q |
101 |
ccaagaacaagatcaggacaggggcaaggtgggtaatagttgat |
144 |
Q |
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|| || || ||||||||||| || || |||||||| || ||||| |
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| T |
24407246 |
cctagtaccagatcaggacatggacatggtgggtagtaattgat |
24407203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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