View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6885_low_4 (Length: 431)
Name: NF6885_low_4
Description: NF6885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6885_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 20621052 - 20621461
Alignment:
| Q |
1 |
gcacaggcacgtcaaaagttttaattgaagctacaggtagcaaactagtaattcccataaaaacttttccggttattattccacgaggaatggagctctt |
100 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20621052 |
gcacaggcatgtcaaaagttttagttgaagctacaggtagcaaactagcaattcccataaaaacttttccggttattattccacgaggaatggagctctt |
20621151 |
T |
|
| Q |
101 |
gcgaagaaactccgaaaagtaaactcttgtccacaaattaagaatggtcgacacatcaagaagagtgggagtaatcacccccaagggaaaacaaattcat |
200 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20621152 |
gcgaagaaactacgaaaaataaactcttgtccacaaattaagaatggtcgacacatcaagaagagtgggagtaatcatccccaagggaaaacaaattcat |
20621251 |
T |
|
| Q |
201 |
tggtaattacaagccaataacataggaatcacaaaatgagttctatatcagacttcatgtcaattattg-nnnnnnnnncattattataggttttgtaaa |
299 |
Q |
| |
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||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20621252 |
tggtaattaaaagccaataacataggaatcagaaaatgagttctatatcagacttcatgtcaattattgaaataaaaaacattattataggttttgtaaa |
20621351 |
T |
|
| Q |
300 |
aaagaaaattataatatttgaaatttatttgataagcc--ttgcaaaatgaagggtcagaacaacgaaacaaaaattcaaattgatgagttagttacaat |
397 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20621352 |
aaagaaaattataatatttgaaatttatttgaaaagccaattgcaaaataaagggtcagaacaacgaaacaaaaattcaaattgatgagttagttacaat |
20621451 |
T |
|
| Q |
398 |
atgtttgtat |
407 |
Q |
| |
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|||||||||| |
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| T |
20621452 |
atgtttgtat |
20621461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 5 - 407
Target Start/End: Original strand, 20590176 - 20590581
Alignment:
| Q |
5 |
aggcacgtcaaaagttttaattgaagctacaggtagcaaactagtaattcccataaaaacttttccggttattattccacgaggaatggagctcttgcga |
104 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||| |||||||||||| |
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| T |
20590176 |
aggcacgtcaaaagttttagttgaagctacaggtagcaaactagcaattcccataaaa-cttgtttggttattattccacgaggaatagagctcttgcga |
20590274 |
T |
|
| Q |
105 |
agaaactccgaaaagtaaactcttgtccacaaattaagaatggtcgacacatcaagaagagtgggagtaatca-cccccaagggaaaacaaattcattgg |
203 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| |
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| T |
20590275 |
agaaactccgaaaagtaaactcttgtccacaaattaagaatggtcgacacatcaagaagagtgggagtcatcatcccccaacggaaaacaaattcattgg |
20590374 |
T |
|
| Q |
204 |
taattacaagccaataacataggaatcacaaaatgagttctatatcagacttcatgtcaattattgnnnnnnnnncattattataggttttgtaaaaaag |
303 |
Q |
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| T |
20590375 |
taattacaagccaataacacaggaattacaaaatgagttctatatcagacttcatgtcaattgttaaaaaaaaaacattattataggttttgtaaaaaag |
20590474 |
T |
|
| Q |
304 |
aaa-attataatatttgaaatttatttgataagcc--ttgcaaaatgaagggtcagaacaacgaaacaaaaattcaaattgatgagttagttacaatatg |
400 |
Q |
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||| || ||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20590475 |
aaatatgataatatttaaaatttatttgaaaagccaattgcaaaatgaagggtcagaacaacgaaacaaaaattcaaattgacgagttagttacaatatg |
20590574 |
T |
|
| Q |
401 |
tttgtat |
407 |
Q |
| |
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||||||| |
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| T |
20590575 |
tttgtat |
20590581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 112 - 407
Target Start/End: Complemental strand, 12058143 - 12057847
Alignment:
| Q |
112 |
ccgaaaagtaaactcttgtccacaaattaagaatggtcgacacatcaagaagagtgggagtaatcacccccaagggaaaacaaattcattggtaattaca |
211 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12058143 |
ccgaaaagtaaattcttgtccacaaattaagaatggtcaacacatcaagaagagtgggagtaatcacccccaagggaaaacaaattcattggtaattaca |
12058044 |
T |
|
| Q |
212 |
agccaataacataggaatcacaaaatgagttctatatcagacttcatgtcaattattgnnnnnnnnncattattataggttttgtaaaaaagaaaattat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12058043 |
agccaataacataggaatcacaaaatgagttctatatcagacttcatgtcaattattg-aaaaaaaacattattataggttttgtaaaaaagaaaattat |
12057945 |
T |
|
| Q |
312 |
aatatttgaaatttatttgataagcc--ttgcaaaatgaagggtcagaacaacgaaacaaaaattcaaattgatgagttagttacaatatgtttgtat |
407 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12057944 |
aatatttgaaatttatttgataagccaattgcaaaatgaagggtcagaacaacgaaacaaaaattcaaattgatgagttagttacaatatgtttgtat |
12057847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 309 - 407
Target Start/End: Original strand, 20632183 - 20632283
Alignment:
| Q |
309 |
tataatatttgaaatttatttgataagcc--ttgcaaaatgaagggtcagaacaacgaaacaaaaattcaaattgatgagttagttacaatatgtttgta |
406 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20632183 |
tataatatttgaaatttatttgaaaaaccaattgcaaaatgaagggtcagaaccacgaaacaaaaattcaaattgatgagttagttacaatatatttgta |
20632282 |
T |
|
| Q |
407 |
t |
407 |
Q |
| |
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| |
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|
| T |
20632283 |
t |
20632283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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