View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6885_low_7 (Length: 320)
Name: NF6885_low_7
Description: NF6885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6885_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 22 - 311
Target Start/End: Complemental strand, 32770436 - 32770147
Alignment:
| Q |
22 |
atacttaacatcgtaccattgtccatctctagaggcttgaagaccctgaacatcatttgggacaagaagcgtgataaaacacatgtctgaatgagctgga |
121 |
Q |
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| T |
32770436 |
atacttaacatcgtaccattgtccatctctagaggcttgaagaccttgaacatcatttgggacaagaagcgtgataaaacacatgtctgaatgagctgga |
32770337 |
T |
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| Q |
122 |
acaccaagaacaagatcaggacaggggcaaggtgggtaatagttgatctttaacaagtgaaccatgttatcaccccctgcatactcctttagctcatgac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32770336 |
acaccaagaacaagatcaggacaggggcaaggtgggtaatagttgatctttaacaagtgaaccatgttatcaccccctgcatactcctttagctcatgac |
32770237 |
T |
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| Q |
222 |
cttcaagccctaaccctattgacaagtttttacacaacttgtctacaaccccatgtaggtgtttgccgtattcctcgttgatctctctgc |
311 |
Q |
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| T |
32770236 |
cttcaagccctaaccctattgacaagtttttgaacaacttgtctacaaccccatgtaggtgtttgccgtattcctcgttgatctctctgc |
32770147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 24400535 - 24400375
Alignment:
| Q |
22 |
atacttaacatcgtaccattgtccatctctagaggcttgaagaccctgaacatcatttgggacaagaagcgtgataaaacacatgtctgaatgagctgga |
121 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||| ||||| || ||||| ||||| | || || | |||| |||| |||| || | || |
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| T |
24400535 |
atacttaacatcataccattgaccatctctagaggcttgaaggccctgcacttcattagggaccaaaatggtaagaaaagacatatctgtgtgtggaggc |
24400436 |
T |
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| Q |
122 |
acaccaagaacaagatcaggacaggggcaaggtgggtaatagttgatctttaacaagtgaa |
182 |
Q |
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| T |
24400435 |
acacctagaacaagatcaggaactggacatggtgggtaatagttgattttcaacatgtgaa |
24400375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 24407349 - 24407203
Alignment:
| Q |
22 |
atacttaacatcgtaccattgtccatctctagaggcttgaagaccctgaacatcatttgggacaagaagcgtgataaaacacatgtctgaatgagctgga |
121 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| || | ||||| || ||| ||||||| |||| || | ||| |
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| T |
24407349 |
atacttaacatcataccattgaccatctctagaggcttgaagaccctccacttcattgggtatgagaagggtaatataacacatatctgtgtgtggtggc |
24407250 |
T |
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| Q |
122 |
acaccaagaacaagatcaggacaggggcaaggtgggtaatagttgat |
168 |
Q |
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||||| || || ||||||||||| || || |||||||| || ||||| |
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| T |
24407249 |
acacctagtaccagatcaggacatggacatggtgggtagtaattgat |
24407203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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