View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6885_low_9 (Length: 297)
Name: NF6885_low_9
Description: NF6885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6885_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 23255434 - 23255176
Alignment:
| Q |
1 |
cacaatagaacttgctaaacatttaccagttcaaatattatctttctgctaactttaagcatgataggttctaaaacaataagacctgtaattgtcgctg |
100 |
Q |
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|||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | | |||||||||| | | |
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| T |
23255434 |
cacaattgaacttgctaaacacttaccaattcaaatattatctttctgctaactttaagcaggataggttctaaaacaatgaaat-tgtaattgtcaccg |
23255336 |
T |
|
| Q |
101 |
ttccatacgtggcagcatgatgtaatagaactattacacgacacagcggtacattacgagagaattaaacatctcaccactgtgagagatcttgacgact |
200 |
Q |
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||||||| |||||||||| || |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
23255335 |
ttccatatgtggcagcatagtgaaatagaactattacacgacacaacggtacattacta-agaattaaacatctcaccactgtgagagatcttgacgact |
23255237 |
T |
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| Q |
201 |
tgtcctttttccagtccatagtagctagcaatggcatcagttcttagcatgtgaggtagct |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23255236 |
tgtcctttttccagtccatagtagctagcaatggcatcagttcttagcatgtgaggtagct |
23255176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 288
Target Start/End: Original strand, 4704630 - 4704731
Alignment:
| Q |
189 |
atcttgacgacttgtcctttttccagtccatagtagctagcaat--ggcatcagttcttagcatgtgaggtagctaaaaacagcaacaaaataggatata |
286 |
Q |
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||||||| |||||||||| ||||||| || |||||||||| || ||||||||||||||||||||||| ||| | |||| |||||||||||| |||||| |
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| T |
4704630 |
atcttgaagacttgtcctctttccagctcaaagtagctagctatatggcatcagttcttagcatgtgagatagttgaaaagagcaacaaaataagatata |
4704729 |
T |
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| Q |
287 |
at |
288 |
Q |
| |
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|| |
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| T |
4704730 |
at |
4704731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 4704466 - 4704578
Alignment:
| Q |
1 |
cacaatagaacttgctaaacatttaccagttcaaatattatctttctgctaactttaagcatgataggttctaaaacaataagacctgtaattgtcgctg |
100 |
Q |
| |
|
||||||||||||||| ||||| | | || | ||| ||| |||||| |||||||| |||||||||||| |||||||||||||| | || | ||||| ||| |
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| T |
4704466 |
cacaatagaacttgc-aaacactaaacaatccaattataatctttttgctaactataagcatgatagattctaaaacaataa-aattggacttgtcactg |
4704563 |
T |
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| Q |
101 |
ttccatacgtggcag |
115 |
Q |
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|||||||| |||||| |
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| T |
4704564 |
ttccatacatggcag |
4704578 |
T |
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