View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6886_high_3 (Length: 371)
Name: NF6886_high_3
Description: NF6886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6886_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 26309895 - 26310254
Alignment:
| Q |
19 |
gcattaccggtgaatcagaggagactgaaacagccacattctccgc-------gacgacataatccaagctcacatactcacacgccttgacggggccgc |
111 |
Q |
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| T |
26309895 |
gcattaccggtgaatcagaggaggctgaaacaacgacattctccgccgtccacgacgacataatccaagctcacatactcacacgccttgacggggccgc |
26309994 |
T |
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| Q |
112 |
tctcgcttccgccgcaagcacctgctcccaattcaactctctat--gtaccaatgaacatctatgggccatcatgtgccactccatctggccacccacca |
209 |
Q |
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| T |
26309995 |
tctcgcttccgccgcaagcacctgctcccaactcaactctctctctgttccaatgaacatctatgggccaacatgtgccactccatctagccatccacca |
26310094 |
T |
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| Q |
210 |
acactgaacgtgtttaacaagtaatctcaaccttccctaatggctcccgctctttctttgcagactctttctcctctcatcatcaaagggatataacttt |
309 |
Q |
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| T |
26310095 |
acactgaacgtgttcaacaagtaatctcaaccttccctaatggctcccgctctttctttgcaga--ctttctcctctcatcatcaaagggatataacttt |
26310192 |
T |
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| Q |
310 |
aaggaatcctgatcaaaccctaagtttaatctcagccgttgatattttccattgtaagggtc |
371 |
Q |
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| T |
26310193 |
aagaaatcctgatcaaaccctaagtttaatctcagccgttgatattttccattgtaagggtc |
26310254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 67 - 360
Target Start/End: Original strand, 25782801 - 25783094
Alignment:
| Q |
67 |
cgacataatccaagctcacatactcacacgccttgacggggccgctctcgcttccgccgcaagcacctgctcccaattcaactctctatgtaccaatgaa |
166 |
Q |
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| T |
25782801 |
cgacataatccaaacacacatactcacccgtctcgacggtcctgctcttgcttccgccgcaagcacctgctcccaattcaactctctatgtaccaatgaa |
25782900 |
T |
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| Q |
167 |
catctatgggccatcatgtgccactccatctggccacccaccaacactgaacgtgtttaacaagtaatctcaaccttccctaatggctcccgctctttct |
266 |
Q |
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||||||||||| | |||||||||||||| ||||| |||||||||||||||||||| | ||||||||||||| |||||| ||||||| ||||||||||| |
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| T |
25782901 |
catctatgggctaacatgtgccactccacttggccttccaccaacactgaacgtgttcagcaagtaatctcaaacttcccaaatggcttccgctctttct |
25783000 |
T |
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| Q |
267 |
ttgcagactctttctcctctcatcatcaaagggatataactttaaggaatcctgatcaaaccctaagtttaatctcagccgttgatattttcca |
360 |
Q |
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| T |
25783001 |
ttgcagactctttctcctctcatcatcaaagggatatgactttaacaaatcatgacgaaaccctaagtttaatctcagccgttgatattttcca |
25783094 |
T |
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