View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6886_low_1 (Length: 875)
Name: NF6886_low_1
Description: NF6886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6886_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 31 - 512
Target Start/End: Original strand, 330047 - 330526
Alignment:
| Q |
31 |
accaatagattgcaagtctctgtattttgctattttacataaaatattaagaattaccaacaatggaatgtgcaaaatttcaatttgataggagaaattg |
130 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
330047 |
accaatagattgcaagtctctgtattttactattttacataaaatattaagaattaccagtaatggaatgtgcaaaatttcaatttgatgggagaaattg |
330146 |
T |
|
| Q |
131 |
ttctatttgtaactgtatgcatctataaacacatttcttttgatgagaatcataagtattggattttgtttgcttgtttagtatttgtttcaaatcttaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
330147 |
ttctatttgtaactgtatgcatctataaacacatttcttttgatgagaatcataagtattggattttgtttgcttgtttagtatttgtttcaaatcttaa |
330246 |
T |
|
| Q |
231 |
gtatttaaaacacatgaagttagtgtgaccttgattgcaacctaagagcacttaagccacgaggctctcctacctaatgaactagtttttggtttgggct |
330 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
330247 |
gtatttaaaacacatgaagttagtgtggccttgattgcaacctaagagcacttaagccacgaggctctcctacctaatgagctagtttttgatttgggct |
330346 |
T |
|
| Q |
331 |
cacgggcttaactcttaacaaattactgacaccatatgcgacgacgccaaatatatttgtttctatcttacttcacccggtctcatctcatatataagnn |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
330347 |
cacgggcttaactcttaacaaattactgacatcatatgcgacgacgcctaatatatttgtttctatcttacttcatccggtctcatctcatatatatg-- |
330444 |
T |
|
| Q |
431 |
nnnnnnnntcatattttaaattcattgaataataaataaatgtatttgatatatagaccatatacatgagatgagagataat |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
330445 |
aaaaaaaatcatattttaaattcattgaataataaataaatgtatttgatatatagaccatatacatgagatgagagataat |
330526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 577 - 858
Target Start/End: Original strand, 330523 - 330807
Alignment:
| Q |
577 |
taatgtataaatttgatattgtaaaaataatcaagttgtaaatgaagcagatccaatttggcag---cagacaaaagagattaagaatgaaaggaatgca |
673 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
330523 |
taatgtataaatttgacattgtaaaaataatcaagtcgtaaatgaagcagatctgatttggcagaagcagacacaagagattaagaatgaaaggaatgca |
330622 |
T |
|
| Q |
674 |
tggatgcatgcatgagagagggaattatgtaattaacgtacgtaccatccttctaaacaaccagggccgcttgaattgttgtgattgtgtacatgttgag |
773 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
330623 |
tggatgcatgcatgagagagggaattatataattaacgaacgtaccatccttctaaacaaccagggccgcttgaattgttgtgattgtgtacatgttgag |
330722 |
T |
|
| Q |
774 |
gaggtggaggttgagcgtattgaggaggagcatattgtggaggatacccttgtgctgggtagggtggtggaggatatccttgttg |
858 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
330723 |
gaggtggaggttgagcgtattgaggaggagcatattgtggaggatacccttgtgctgggtagggtggtggaggatatccttgttg |
330807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University