View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6886_low_2 (Length: 433)
Name: NF6886_low_2
Description: NF6886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6886_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Complemental strand, 34304930 - 34304528
Alignment:
| Q |
20 |
ccatcaaaagcatagaatatacatatttagcttcataatgaccccctaatgcagcatttttcagattgtcaaaacctaaattcaccatcaaagtgctaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34304930 |
ccatcaaaagcatagaatatacatatttagcttcatgatgaccccctaatgcagcatttttcagattgtcaaaacctaaattcaccatcaaagtgctaaa |
34304831 |
T |
|
| Q |
120 |
atattgcaccattccttcacggtaaataatttccaaattacccatttccctacaacgactcaagaacgccgtttccttttcactggtaaaccatgcaagt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
34304830 |
atattgcaccattccttcacggtaaataatctccaaattacccatttccctacaacgactcaagaacatggtttccttttcactggtgaaccatgcaagt |
34304731 |
T |
|
| Q |
220 |
ggaatcaatgcaaatttatctagtgctgcatgttgataaacatgaggatcttctaaagctttacaaaaatctttgcaactcaatgtggttttgaataaat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34304730 |
ggaatcaatgcaaatttatctagtgctgcatgttgataaacatgaggatcttctaaagctttacaaaaatctttgcaactcaatgtggttttgaataaat |
34304631 |
T |
|
| Q |
320 |
cagccattgagaaagttgcaacctttcccactatatttgccaataactcgtccggtagagcctctacaaggcttataatggctgtctcgttgatttcttt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34304630 |
cagccattgagaaagttgcaacctttcccactatatttgccaataactcgtctggtagagcctctacaaggcttataatggctgtctcgttgatttcttt |
34304531 |
T |
|
| Q |
420 |
ctt |
422 |
Q |
| |
|
||| |
|
|
| T |
34304530 |
ctt |
34304528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 31001310 - 31001616
Alignment:
| Q |
20 |
ccatcaaaagcatagaatatacatatttagcttcataatgaccccctaatgcagcatttttcagattgtcaaaacctaaattcaccatcaaagtgctaaa |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||| ||||| ||| ||||||||||| |||||| | ||||||||||||||| | | ||| |
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| T |
31001310 |
ccatcaaaagcatagaataaacatatttagcttcatgatgaccctctaataaagcctttttcagattctcaaaatccaaattcaccatcaaaatacaaaa |
31001409 |
T |
|
| Q |
120 |
atattgcaccattccttcacggtaaataatttccaaattacccatttccctacaacgactcaagaacgccgtttccttttcactggtaaaccatgcaagt |
219 |
Q |
| |
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|||||||||||||||||| | |||| ||| ||||||||||| ||||||||| | |||| |||| |||||||||||| ||| ||||||| | || |
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| T |
31001410 |
ttattgcaccattccttcatgataaagaatctccaaattaccattttccctac---gtatcaaaaacgtggtttccttttcatcggtgaaccatgaatgt |
31001506 |
T |
|
| Q |
220 |
ggaatcaatgcaaatttatctagtgctgcatgttgataaacatgaggatcttctaaagctttacaaaaatctttgcaactcaatgtggttttgaataaat |
319 |
Q |
| |
|
|||||||| | ||| |||| ||||| |||||||||||||| | | ||||| ||||| ||| ||||||||||||||||||| || ||||| |||||| |
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|
| T |
31001507 |
ggaatcaaaggaaacttatatagtgacgcatgttgataaacgtaaagatctgctaaaatgttaagaaaatctttgcaactcaatttgattttgcataaat |
31001606 |
T |
|
| Q |
320 |
cagccattga |
329 |
Q |
| |
|
|| ||||||| |
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|
| T |
31001607 |
caaccattga |
31001616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 14573061 - 14572821
Alignment:
| Q |
20 |
ccatcaaaagcatagaatatacatatttagcttcataatgaccccctaatgcagcatttttcagattgtcaaaacctaaatt---caccatcaaagtgct |
116 |
Q |
| |
|
||||||||||||||||||| |||||||| || |||| ||||||| |||||||||| || |||| ||| |||||||||||||| || |||| |||| || |
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| T |
14573061 |
ccatcaaaagcatagaataaacatatttcgcatcatgatgaccctctaatgcagccttcttcaaattctcaaaacctaaattattcaacatcgaagtact |
14572962 |
T |
|
| Q |
117 |
aaaatattgcaccattccttcacggtaaataatttccaaattacccatttccctacaacgactcaagaacgccgtttccttttcactggtaaaccatgca |
216 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||| ||||||||||| ||||||||||||| |||||||||| ||||| ||||| ||| ||||||| | |
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|
| T |
14572961 |
aaaatattgctccattccttcacgataaagaatctccaaattaccactttccctacaacgtctcaagaacgaggtttctttttcttcggtgaaccatgga |
14572862 |
T |
|
| Q |
217 |
agtggaatcaatgcaaatttatctagtgctgcatgttgata |
257 |
Q |
| |
|
|||||||| |||||||| ||||| | | |||||||||||| |
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|
| T |
14572861 |
agtggaattaatgcaaacttatccaaagatgcatgttgata |
14572821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 49666313 - 49666073
Alignment:
| Q |
20 |
ccatcaaaagcatagaatatacatatttagcttcataatgaccccctaatgcagcatttttcagattgtcaaaacctaaattcaccatcaaagtgctaaa |
119 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| ||||||| ||| ||||| || |||| ||| | |||||||||| |||||||||||| || || |
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|
| T |
49666313 |
ccatcaaaagcatagaataaacatatttggcttcatgatgaccctctagcgcagccttcttcaaattcttcaaacctaaatccaccatcaaagtactgaa |
49666214 |
T |
|
| Q |
120 |
atattgcaccattccttcacggtaaataatttccaaattacccatttccctacaacgactcaagaacgccgtttccttttcactggtaaaccatgcaagt |
219 |
Q |
| |
|
||||||||||||||||||||| ||| |||| ||||| ||||| |||| | |||||||||||||||| ||||| |||||| ||| ||||||| |||| |
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|
| T |
49666213 |
atattgcaccattccttcacgataagtaatctccaagttaccactttctttgcaacgactcaagaacgaggtttctttttcatcggtgaaccatggaagt |
49666114 |
T |
|
| Q |
220 |
ggaatcaatgcaaatttatctagtgctgcatgttgataaac |
260 |
Q |
| |
|
|||| ||| ||||| ||||| | ||||||||||||||||| |
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|
| T |
49666113 |
ggaaccaaagcaaacttatccatagctgcatgttgataaac |
49666073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 50936075 - 50936310
Alignment:
| Q |
20 |
ccatcaaaagcatagaatatacatatttagcttcataatgaccccctaatgcagcatttttcagattgtcaaaacctaaattcaccatcaaagtgctaaa |
119 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| ||||||| ||| ||||| || |||| ||| | |||||||||| |||||||||||| || || |
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|
| T |
50936075 |
ccatcaaaagcatagaataaacatatttggcttcatgatgaccctctagtgcagtcttcttcaaattcttcaaacctaaatccaccatcaaagtactgaa |
50936174 |
T |
|
| Q |
120 |
atattgcaccattccttcacggtaaataatttccaaattacccatttccctacaacgactcaagaacgccgtttccttttcactggtaaaccatgcaagt |
219 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| ||||| |||| |||||||| || ||||||| ||||| |||||| ||| ||||||| |
|
|
| T |
50936175 |
atattgcaccattccttcacgataaataatctccaagttaccgctttctctacaacggctaaagaacgaggtttctttttcatcggtgaaccatg----- |
50936269 |
T |
|
| Q |
220 |
ggaatcaatgcaaatttatctagtgctgcatgttgataaac |
260 |
Q |
| |
|
| || ||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
50936270 |
gaaaccaatgcaaacttatccatagctgcatgttgataaac |
50936310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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