View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6886_low_4 (Length: 292)
Name: NF6886_low_4
Description: NF6886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6886_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 4 - 274
Target Start/End: Original strand, 8642321 - 8642591
Alignment:
| Q |
4 |
agtttggtgttcattacaggaagtagtggcaaaaaacaaattggtggaaattgagagtttgaaagaaatgcagtgcaagagaaatattggtgtgtattca |
103 |
Q |
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| T |
8642321 |
agtttggttttcattacaggaagtagtggaaaaaaacaaattggtggaaattaagagtttgaaagaaatgcagtgcaagagaaatattggtgtgtattca |
8642420 |
T |
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| Q |
104 |
cattacattattacttatacagatttttattcataaaaattggaaactctaaatatacatatcatgtaatttgaaactgcaatagaaggctgaagattac |
203 |
Q |
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| T |
8642421 |
cattacatgattacttatacagatttttattcataaaaattggaaactctaaatatacatatcatgtaatttgaaactgcaatagaaggctgaagattac |
8642520 |
T |
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| Q |
204 |
aaagaagaaatgaagttcattaactacttaggagtattgcattaatttgaagtttatatgtatcgccttag |
274 |
Q |
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| T |
8642521 |
aaagaagaaatgaagttcattaactacttaggagtattgcattaatttgaagtttatatgtatcgccttag |
8642591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 8649907 - 8650010
Alignment:
| Q |
119 |
tatacagatttttattcataaaaattggaaactctaaatatacatatcat--gtaatttgaaactgcaatagaaggctgaagattacaaagaagaaatga |
216 |
Q |
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| T |
8649907 |
tatacaaatttttattcatggaaattggaaactctga-tatacatatcatatgtaatttgaaactgcaatggaaggctgaaaattacaaagaaggaatga |
8650005 |
T |
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| Q |
217 |
agttc |
221 |
Q |
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| T |
8650006 |
agttc |
8650010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 8649782 - 8649844
Alignment:
| Q |
6 |
tttggtgttcattacaggaagtagtggcaaaaaacaaattggtggaaattgagagtttgaaag |
68 |
Q |
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| T |
8649782 |
tttggttttcattacaggaagcagtggcaaaaaagaaattggtggaaattaagaatttgaaag |
8649844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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