View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6886_low_6 (Length: 203)

Name: NF6886_low_6
Description: NF6886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6886_low_6
NF6886_low_6
[»] chr2 (21 HSPs)
chr2 (1-152)||(9774152-9774303)
chr2 (70-171)||(29719104-29719206)
chr2 (83-166)||(30411805-30411889)
chr2 (69-166)||(27908996-27909093)
chr2 (74-166)||(25618685-25618777)
chr2 (83-171)||(29143088-29143176)
chr2 (70-171)||(15339363-15339465)
chr2 (83-166)||(28925660-28925743)
chr2 (83-165)||(17675507-17675589)
chr2 (69-142)||(25887805-25887878)
chr2 (83-166)||(26603237-26603320)
chr2 (149-186)||(9762311-9762348)
chr2 (70-172)||(17743348-17743451)
chr2 (74-155)||(32085594-32085673)
chr2 (87-163)||(25196153-25196229)
chr2 (83-171)||(17349486-17349575)
chr2 (83-166)||(25530574-25530657)
chr2 (83-165)||(17635653-17635735)
chr2 (74-114)||(11382682-11382722)
chr2 (123-171)||(17198035-17198083)
chr2 (83-143)||(17890076-17890135)
[»] chr5 (12 HSPs)
chr5 (70-166)||(20744547-20744643)
chr5 (70-165)||(17432008-17432103)
chr5 (71-157)||(24260643-24260728)
chr5 (71-168)||(36175261-36175356)
chr5 (83-171)||(20563964-20564053)
chr5 (69-166)||(15690902-15690997)
chr5 (77-166)||(24140568-24140657)
chr5 (70-114)||(22755648-22755692)
chr5 (83-166)||(20315307-20315390)
chr5 (88-166)||(24245421-24245499)
chr5 (97-166)||(34128788-34128857)
chr5 (83-166)||(15375772-15375856)
[»] chr6 (18 HSPs)
chr6 (70-166)||(27737566-27737662)
chr6 (69-166)||(23844342-23844440)
chr6 (83-171)||(25781916-25782004)
chr6 (83-171)||(20144994-20145083)
chr6 (83-171)||(22187756-22187845)
chr6 (83-171)||(11136034-11136124)
chr6 (86-166)||(27124372-27124452)
chr6 (123-169)||(5624819-5624865)
chr6 (83-169)||(24475194-24475280)
chr6 (84-157)||(22813607-22813680)
chr6 (123-171)||(22566034-22566082)
chr6 (87-171)||(24657341-24657425)
chr6 (71-154)||(23645657-23645738)
chr6 (123-169)||(1635140-1635186)
chr6 (73-166)||(12183208-12183299)
chr6 (90-151)||(17382214-17382275)
chr6 (70-165)||(14079336-14079432)
chr6 (70-114)||(28933589-28933632)
[»] chr3 (20 HSPs)
chr3 (83-171)||(8770146-8770234)
chr3 (70-142)||(20429836-20429908)
chr3 (69-166)||(21303232-21303327)
chr3 (83-166)||(8765244-8765327)
chr3 (73-166)||(2167495-2167587)
chr3 (83-171)||(17438303-17438391)
chr3 (86-165)||(932884-932963)
chr3 (83-166)||(4650364-4650447)
chr3 (70-166)||(16245607-16245703)
chr3 (70-162)||(21325468-21325558)
chr3 (70-166)||(41508493-41508588)
chr3 (86-166)||(12754800-12754881)
chr3 (77-157)||(19925508-19925588)
chr3 (70-157)||(18736559-18736645)
chr3 (77-114)||(3116349-3116386)
chr3 (123-168)||(27413772-27413817)
chr3 (123-171)||(8170050-8170098)
chr3 (71-143)||(10745028-10745099)
chr3 (83-155)||(17155931-17156001)
chr3 (87-166)||(19908449-19908529)
[»] chr7 (20 HSPs)
chr7 (70-169)||(1848102-1848202)
chr7 (79-166)||(20582390-20582477)
chr7 (70-157)||(3329543-3329631)
chr7 (72-166)||(9131038-9131132)
chr7 (73-166)||(5108693-5108787)
chr7 (70-143)||(8313293-8313364)
chr7 (83-171)||(8877559-8877648)
chr7 (70-146)||(7492160-7492236)
chr7 (83-166)||(13418660-13418743)
chr7 (83-166)||(18662579-18662661)
chr7 (70-171)||(39273048-39273150)
chr7 (70-166)||(2563943-2564040)
chr7 (87-171)||(11803211-11803295)
chr7 (70-153)||(16297724-16297806)
chr7 (123-166)||(4786019-4786062)
chr7 (83-165)||(7397280-7397362)
chr7 (69-107)||(2350682-2350720)
chr7 (123-169)||(16365884-16365930)
chr7 (83-166)||(6042589-6042672)
chr7 (70-114)||(7318400-7318443)
[»] chr4 (12 HSPs)
chr4 (69-156)||(17216944-17217031)
chr4 (70-143)||(15164891-15164964)
chr4 (69-166)||(17337012-17337110)
chr4 (87-166)||(17709896-17709975)
chr4 (73-157)||(17672132-17672214)
chr4 (83-166)||(13908992-13909076)
chr4 (69-166)||(24639338-24639435)
chr4 (83-171)||(19562047-19562136)
chr4 (83-166)||(19492589-19492673)
chr4 (77-166)||(26115783-26115871)
chr4 (70-114)||(14649021-14649064)
chr4 (70-114)||(16730330-16730374)
[»] chr1 (23 HSPs)
chr1 (83-170)||(29242645-29242732)
chr1 (73-171)||(9401634-9401732)
chr1 (87-157)||(17610142-17610213)
chr1 (83-171)||(22623029-22623117)
chr1 (69-169)||(28008231-28008329)
chr1 (83-157)||(16179144-16179219)
chr1 (73-140)||(51473780-51473846)
chr1 (87-165)||(16069440-16069518)
chr1 (70-155)||(22664333-22664417)
chr1 (83-143)||(14779704-14779764)
chr1 (123-167)||(17121377-17121421)
chr1 (70-171)||(17359286-17359388)
chr1 (70-166)||(18100891-18100985)
chr1 (83-171)||(18825782-18825870)
chr1 (83-171)||(23179923-23180011)
chr1 (123-166)||(13345215-13345258)
chr1 (123-166)||(21334595-21334638)
chr1 (86-166)||(21449218-21449299)
chr1 (70-157)||(31235935-31236023)
chr1 (97-166)||(12208754-12208823)
chr1 (83-157)||(25405517-25405591)
chr1 (77-113)||(16787657-16787693)
chr1 (123-171)||(16916818-16916866)
[»] scaffold0671 (1 HSPs)
scaffold0671 (83-171)||(569-657)
[»] scaffold0102 (1 HSPs)
scaffold0102 (69-166)||(35663-35759)
[»] scaffold0638 (1 HSPs)
scaffold0638 (83-164)||(701-783)
[»] chr8 (9 HSPs)
chr8 (83-171)||(16404039-16404127)
chr8 (90-166)||(24110547-24110623)
chr8 (83-168)||(18569193-18569278)
chr8 (87-171)||(19264173-19264258)
chr8 (74-166)||(13314869-13314962)
chr8 (83-166)||(24114161-24114244)
chr8 (123-166)||(24269775-24269818)
chr8 (83-164)||(44010903-44010984)
chr8 (98-166)||(26394576-26394644)
[»] scaffold0056 (2 HSPs)
scaffold0056 (83-166)||(21403-21486)
scaffold0056 (83-171)||(25113-25201)
[»] scaffold0155 (1 HSPs)
scaffold0155 (69-166)||(35871-35968)
[»] scaffold0054 (1 HSPs)
scaffold0054 (83-171)||(72148-72237)
[»] scaffold0024 (1 HSPs)
scaffold0024 (83-152)||(39724-39792)
[»] scaffold0034 (1 HSPs)
scaffold0034 (83-171)||(76542-76631)
[»] scaffold0035 (1 HSPs)
scaffold0035 (83-157)||(70050-70125)
[»] scaffold0062 (1 HSPs)
scaffold0062 (70-114)||(43156-43199)
[»] scaffold0005 (1 HSPs)
scaffold0005 (70-114)||(168228-168271)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 9e-69; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 9774303 - 9774152
Alignment:
Q  1 agttaacgagcacgtttacaattcgcgttgcttattttcagataagtgataagtggagtatcgtatccaaagggttagagatttgcaatttttatatgtt 100  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  9774303 agttaacaagcacgtttacaattcgtgttgcttattttcagataagtgataagtagagtatcgtatccaaagggttagagatttgcaattgttatatgtt 9774204  T
Q  101 tacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggtta 152  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9774203 tacaacagagcaagcttatctattttggttgaagaaaagtaagaagcggtta 9774152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 29719206 - 29719104
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtat-tttggttgaagaaaagtaagaagcggttaggatttttcgaatctc 168  Q
    |||||||||||| ||||||||||||||||| | |||||||||||| |||  | | |||||||| ||||||||||| ||| ||||||||| |||||||| |    
T  29719206 aagggttagagagttgcaatttttatatgtatgcaacagagcaagtttacctgtgtttggttgcagaaaagtaagcagcagttaggattcttcgaatccc 29719107  T
Q  169 ctc 171  Q
    |||    
T  29719106 ctc 29719104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 30411805 - 30411889
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||| ||||| |||||||||||| |||  ||| ||||||||| ||||||||||| ||||||||||||||||||||||    
T  30411805 ttgcaatttttatctgtttgcaacagagcaagtttacatgt-ttttggttgcagaaaagtaagcagcggttaggatttttcgaatc 30411889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 27909093 - 27908996
Alignment:
Q  69 aaagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||||||   ||||||||||||| ||||| |||||||||||| |||  | ||||||||| |||||| |||| ||||||||||||| ||||||||    
T  27909093 aaagggttagaacgttgcaatttttatctgtttgcaacagagcaagtttacctgttttggttgcagaaaattaagcagcggttaggattcttcgaatc 27908996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 25618685 - 25618777
Alignment:
Q  74 gttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||||||||||||||||| ||||| |||||||| ||| |||  | ||||||||| ||||||||||| ||||||| | ||| ||||||||    
T  25618685 gttagagatttgcaatttttatctgtttgcaacagagaaagtttacctgttttggttgcagaaaagtaagcagcggttcgaattcttcgaatc 25618777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 29143088 - 29143176
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||| ||||| |||||||||||| |||  ||||||||||| ||||||||||  |||||||| |||| |||||||| ||||    
T  29143088 ttgcaatttttatctgtttgcaacagagcaagtttacctattttggttgtagaaaagtaaacagcggttaagattcttcgaatcccctc 29143176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 15339363 - 15339465
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgt-attttggttgaagaaaagtaagaagcggttaggatttttcgaatctc 168  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||| |||| |  |||| |||| ||||||||||| ||| ||||||||| ||| |||| |    
T  15339363 aagggttagagagttgcaatttttatttgtttgcaacagagcaagtttatctgttttttgttgcagaaaagtaagcagcagttaggattcttcaaatccc 15339462  T
Q  169 ctc 171  Q
    |||    
T  15339463 ctc 15339465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 28925660 - 28925743
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||| ||||| ||||| |||||| |||  | ||||||||| ||||||||||| || |||||||||| ||||||||    
T  28925660 ttgcaatttttatttgtttgcaacatagcaagtttacctgttttggttgcagaaaagtaagcagaggttaggattcttcgaatc 28925743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 17675589 - 17675507
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaat 165  Q
    ||||||||||||| ||||| |||||||||||| |||  | ||||||||| |||||| |||  ||||||||| |||||||||||    
T  17675589 ttgcaatttttatctgtttgcaacagagcaagtttacctgttttggttgcagaaaaataaacagcggttagaatttttcgaat 17675507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 25887878 - 25887805
Alignment:
Q  69 aaagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgta-ttttggttgaagaaaagtaa 142  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||| |||  || ||||||||| ||||||||||    
T  25887878 aaagggttagagatttgcaatttttatctgtttgcaacagagcaag-ttacctatttttggttgcagaaaagtaa 25887805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 26603320 - 26603237
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||| ||||| |||||||||| | |||  ||| ||||||||| ||||||||||| ||||||||||||| ||||||||    
T  26603320 ttgcaatttttatctgtttgcaacagagca-gtttacctgt-ttttggttgtagaaaagtaagcagcggttaggattcttcgaatc 26603237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 9762348 - 9762311
Alignment:
Q  149 gttaggatttttcgaatctcctccaccccatttatatt 186  Q
    |||| |||||||||||||||||||||||||||||||||    
T  9762348 gttatgatttttcgaatctcctccaccccatttatatt 9762311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 17743451 - 17743348
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatct 167  Q
    |||||||||||| ||||||||||||| | ||| ||||  |||||| |||  ||| ||||||||| ||||||| |||  |||||||||||| || ||||||    
T  17743451 aagggttagagagttgcaatttttatctttttgcaactaagcaagtttacctgt-ttttggttgtagaaaaggaagccgcggttaggattatttgaatct 17743353  T
Q  168 cctcc 172  Q
    |||||    
T  17743352 cctcc 17743348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 32085594 - 32085673
Alignment:
Q  74 gttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttagga 155  Q
    |||||||||| ||||||||||| ||||| |||||||||||| |||  |  |||||||| ||||||||||| |||||||||||    
T  32085594 gttagagatt-gcaatttttatctgtttgcaacagagcaag-ttacctggtttggttgcagaaaagtaagcagcggttagga 32085673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 25196153 - 25196229
Alignment:
Q  87 aatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcga 163  Q
    ||||||||||||||| ||||| |||||| |||  | ||||||||| | ||||||||| || |||||||||| |||||    
T  25196153 aatttttatatgtttgcaacatagcaagtttacctgttttggttgcaaaaaagtaagcagtggttaggattcttcga 25196229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 17349486 - 17349575
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||| ||||| |||||||||||| |||  ||| ||||||||| | ||||||||| |||||| || ||| |||||||| ||||    
T  17349486 ttgcaatttttatctgtttgcaacagagcaagtttacttgt-ttttggttgcaaaaaagtaagcagcggtcagaattcttcgaatcccctc 17349575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 25530574 - 25530657
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||| ||||| ||||||||| |  |||  | ||||||||| | || |||||| ||||||||||||| ||||||||    
T  25530574 ttgcaatttttatctgtttgcaacagagcgaatttacctgttttggttgcaaaatagtaagcagcggttaggattcttcgaatc 25530657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 17635735 - 17635653
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaat 165  Q
    ||||||||||||| ||||| |||||||||||| |||  | ||||||||| ||| || |||  ||| ||||| |||||||||||    
T  17635735 ttgcaatttttatctgtttgcaacagagcaagtttacctgttttggttgcagataaataaacagcagttagaatttttcgaat 17635653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 11382722 - 11382682
Alignment:
Q  74 gttagagatttgcaatttttatatgtttacaacagagcaag 114  Q
    ||||||||||||||| |||||| ||||| ||||||||||||    
T  11382722 gttagagatttgcaaattttatctgtttgcaacagagcaag 11382682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 17198035 - 17198083
Alignment:
Q  123 ttttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||| ||||||||||| |||||||| |||| |||||||| ||||    
T  17198035 ttttggttgcagaaaagtaagcagcggttaagattcttcgaatcccctc 17198083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 17890076 - 17890135
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaag 143  Q
    ||||||||||||||||||| |||||||||||| |||  | ||||||||| ||||| |||||    
T  17890076 ttgcaatttttatatgtttgcaacagagcaag-ttacctgttttggttgcagaaatgtaag 17890135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 20744643 - 20744547
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||||||| ||||||||||||| ||||| ||||| |||||| |||  | ||||||||| ||||||||||| ||||||||||||| ||||||||    
T  20744643 aagggttagagagttgcaatttttatctgtttgcaacatagcaagtttacctgttttggttgtagaaaagtaagcagcggttaggattcttcgaatc 20744547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 17432008 - 17432103
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaat 165  Q
    |||||||| ||| ||| ||||||| | ||||| |||||||||||| |||  | ||||||||| ||||||||||| ||||||||||||| |||||||    
T  17432008 aagggttaaagagttgtaatttttttctgtttgcaacagagcaagtttacttgttttggttgcagaaaagtaagcagcggttaggattcttcgaat 17432103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 24260643 - 24260728
Alignment:
Q  71 agggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatt 157  Q
    ||||||||||||||||||||||||| ||||| |||||||||||| |||  ||||||||||| ||||| || || |||||||| ||||    
T  24260643 agggttagagatttgcaatttttatctgtttgcaacagagcaag-ttacctattttggttgcagaaatgttaggagcggttatgatt 24260728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 36175261 - 36175356
Alignment:
Q  71 agggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctc 168  Q
    ||||||||||||| ||||||||||| ||||| ||||| |||||| |||  | ||||||||| |||||||||||||||||||| |||| || |||||||    
T  36175261 agggttagagatt-gcaatttttatctgttttcaacaaagcaag-ttacctgttttggttgtagaaaagtaagaagcggttatgattctttgaatctc 36175356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 20564053 - 20563964
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||| ||||| |||||||||||  |||  ||| ||||||||| ||||||||||||||| ||||||||| |||||||| ||||    
T  20564053 ttgcaatttttatctgtttgcaacagagcaaatttacttgt-ttttggttgcagaaaagtaagaagcagttaggattcttcgaatcacctc 20563964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 15690902 - 15690997
Alignment:
Q  69 aaagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||||||||||||||||| ||||   ||||||||||  |||  | ||||||||| ||||||||||| ||  ||||||||| ||||||||    
T  15690902 aaagggttagagatttgcaatttttatttgttcgtaacagagcaa-attacctgttttggttgcagaaaagtaagcag-tgttaggattcttcgaatc 15690997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 24140568 - 24140657
Alignment:
Q  77 agagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||| || |||||||||| ||| | | |||||||||| |||  ||||||||||| ||||||||||| | ||||||||||| ||| ||||    
T  24140568 agagacttccaatttttatctgtgtgcgacagagcaagtttacctattttggttgcagaaaagtaagcaacggttaggattcttcaaatc 24140657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 22755648 - 22755692
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaag 114  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||||    
T  22755648 aagggttagagatttacaatttttatctgtttgcaacagagcaag 22755692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 20315390 - 20315307
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||| ||||| ||||| |||||| |||  | ||||||||| | || ||||||||||| ||||| || ||||||||    
T  20315390 ttgcaatttttatctgtttgcaacaaagcaagtttacatgttttggttgcaaaatagtaagaagcgattagggttcttcgaatc 20315307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 24245499 - 24245421
Alignment:
Q  88 atttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||| ||||| ||||| |||||| |||  | |||| |||| ||||||||||| | ||||||||||| ||||||||    
T  24245499 atttttatttgtttccaacaaagcaagtttacctgttttagttgcagaaaagtaagcaacggttaggattcttcgaatc 24245421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 34128788 - 34128857
Alignment:
Q  97 tgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||| ||| |||||||| |||  | ||||||||| ||||||||||| | ||||||||||| ||||||||    
T  34128788 tgtttgcaatagagcaagtttacctgttttggttgcagaaaagtaagcaacggttaggattcttcgaatc 34128857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 15375856 - 15375772
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgta-ttttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||| ||||| |||||||||||| |    || ||||||||| | ||||||||| | ||||||||||| ||||||||    
T  15375856 ttgcaatttttatttgtttgcaacagagcaagttcgcctatttttggttgcataaaagtaagtaacggttaggattcttcgaatc 15375772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 27737662 - 27737566
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||| |||  | |||| |||| | ||||||||| ||||||||||||| ||||||||    
T  27737662 aagggttagagagttgcaatttttatctgtttgcaacagagcaagtttacctgtttttgttgcaaaaaagtaagcagcggttaggattcttcgaatc 27737566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 23844440 - 23844342
Alignment:
Q  69 aaagggttagagat-ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||| || ||||||||||||| ||||| ||| ||| |||| |||  | ||||||||| | ||||||||| ||||||||||||||||||||||    
T  23844440 aaagggttagaaatgttgcaatttttatctgtttgcaatagaccaagtttacctgttttggttgcataaaagtaagcagcggttaggatttttcgaatc 23844342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 25781916 - 25782004
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||| ||||| |||||||||||| |||  ||||||||||| ||||||||||  ||  ||||||||| |||||||| ||||    
T  25781916 ttgcaatttttatctgtttgcaacagagcaagtttacctattttggttgcagaaaagtaaacagtagttaggattcttcgaatcccctc 25782004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 20145083 - 20144994
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgta-ttttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||||||||| |||||||| ||| ||| ||| |||| |||| ||||||| ||| |||||| |||||| |||||||| ||||    
T  20145083 ttgcaatttttatatgtttgcaacagagaaagtttacgtatttttagttgcagaaaagcaagcagcggtaaggattcttcgaatcccctc 20144994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 22187756 - 22187845
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgta-ttttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||||||||| |||||||| ||| ||| ||| |||| |||| ||||||| ||| |||||| |||||| |||||||| ||||    
T  22187756 ttgcaatttttatatgtttgcaacagagaaagtttacgtatttttagttgcagaaaagcaagcagcggtaaggattcttcgaatcccctc 22187845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 11136034 - 11136124
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttg-aagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||| ||||| ||||||||| | ||||  ||| ||||||||| || ||||||||||||||||||||||| |||||||| ||||    
T  11136034 ttgcaatttttatctgtttgcaacagagcgaacttacctgt-ttttggttgcaaaaaaagtaagaagcggttaggattcttcgaatcccctc 11136124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 27124452 - 27124372
Alignment:
Q  86 caatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||||||||||| |||||||||||| |||  | | ||||||| ||||||||||| |||||||| |||| || |||||    
T  27124452 caatttttatatgtttgcaacagagcaagtttacctgtcttggttgcagaaaagtaagcagcggttaagattctttgaatc 27124372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 5624819 - 5624865
Alignment:
Q  123 ttttggttgaagaaaagtaagaagcggttaggatttttcgaatctcc 169  Q
    ||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  5624819 ttttggttgcagaaaagtaagcagcggttaggattcttcgaatctcc 5624865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 24475194 - 24475280
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcc 169  Q
    ||||||| ||||| ||||| ||||| | |||| |||  | ||||||||| ||||||||||| || |||||||||| |||||||||||    
T  24475194 ttgcaatctttatctgtttgcaacaaaacaagtttacctgttttggttgcagaaaagtaagtagtggttaggattcttcgaatctcc 24475280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 22813680 - 22813607
Alignment:
Q  84 tgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatt 157  Q
    |||||||||||| ||||| ||||| |||||| |||  | ||||||||| ||||||||||| |||||||| ||||    
T  22813680 tgcaatttttatttgtttgcaacaaagcaagtttacctgttttggttgcagaaaagtaagtagcggttatgatt 22813607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 22566082 - 22566034
Alignment:
Q  123 ttttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||| ||| ||||||||||| |||||||||||||||| ||||||||||    
T  22566082 ttttgattgtagaaaagtaagcagcggttaggattttttgaatctcctc 22566034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 24657425 - 24657341
Alignment:
Q  87 aatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||| ||||| ||||||||| |  |||  | ||||||||| ||||||||||| ||||||||| ||| |||||||| ||||    
T  24657425 aatttttatctgtttgcaacagagcgaatttacctgttttggttgcagaaaagtaagcagcggttagaattcttcgaatcccctc 24657341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 23645738 - 23645657
Alignment:
Q  71 agggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttagg 154  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||| |||  | ||||||||| | ||||||||| || |||||||    
T  23645738 agggttagagatt-gcaatttttatttgtttgcaacagagcaag-ttacatgttttggttgcataaaagtaagcagtggttagg 23645657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 1635140 - 1635186
Alignment:
Q  123 ttttggttgaagaaaagtaagaagcggttaggatttttcgaatctcc 169  Q
    ||||||||| ||||||||||  ||||||||||||| |||||||||||    
T  1635140 ttttggttgtagaaaagtaaacagcggttaggattcttcgaatctcc 1635186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 12183299 - 12183208
Alignment:
Q  73 ggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||| ||||| ||||| ||||| ||||| |||||| |||  | ||||||||  ||||||||||| | ||||||||||| ||||||||    
T  12183299 ggttagagatt-gcaatgtttatctgtttgcaacatagcaag-ttacctgttttggttacagaaaagtaagcaacggttaggattcttcgaatc 12183208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 17382214 - 17382275
Alignment:
Q  90 ttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggtt 151  Q
    |||||| ||||| |||||||||||| |||  | ||||||||| ||||||||||| |||||||    
T  17382214 ttttatctgtttgcaacagagcaagtttacatgttttggttgcagaaaagtaagcagcggtt 17382275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 14079432 - 14079336
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgta-ttttggttgaagaaaagtaagaagcggttaggatttttcgaat 165  Q
    ||||| |||||| ||||||||||||| ||||| ||||| || ||| ||   || ||||||||  ||||||||||| ||||||||| ||| |||||||    
T  14079432 aagggctagagagttgcaatttttatctgtttgcaacaaaggaagttttcctatttttggttacagaaaagtaagcagcggttagaattcttcgaat 14079336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 28933632 - 28933589
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaag 114  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||    
T  28933632 aagggttagagatt-gcaatttttatctgtttgcaacagagcaag 28933589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 8770146 - 8770234
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||||||||| |||||||||||| |||  | ||||||||| ||||||||||| ||| ||||||||| |||||||| ||||    
T  8770146 ttgcaatttttatatgtttgcaacagagcaagtttacctgttttggttgcagaaaagtaagcagcagttaggattcttcgaatcccctc 8770234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 20429836 - 20429908
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaa 142  Q
    ||||||||||  |||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||||||||    
T  20429836 aagggttagaagtttgcaatttttatatgtttgcaacagagcaagtttatctattttggttgcagaaaagtaa 20429908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 21303327 - 21303232
Alignment:
Q  69 aaagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||| |||  | ||||||||| ||||||||||| ||||||||||||| || |||||    
T  21303327 aaagggttagagatt-gcaatttttatctgtttgcaacagagcaag-ttacttgttttggttgcagaaaagtaagcagcggttaggattatttgaatc 21303232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 8765244 - 8765327
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||||||||| |||||||||||| |||  | ||||||||| ||||||||||| ||| |||| |||| ||||||||    
T  8765244 ttgcaatttttatatgtttgcaacagagcaagtttacctgttttggttgcagaaaagtaagcagcagttaagattcttcgaatc 8765327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 2167587 - 2167495
Alignment:
Q  73 ggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||||||||||||| ||||| ||||| | |||| |||  | |||||||||  ||||||||||||| |||||||||| ||||||||    
T  2167587 ggttagagatttgcaatttttatctgtttgcaacataccaag-ttacctgttttggttgtggaaaagtaagaagtggttaggattcttcgaatc 2167495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 17438391 - 17438303
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||| ||||| |||||||||||  |||  | ||||||||| ||||||||||| | ||||||||||| |||||||| ||||    
T  17438391 ttgcaatttttatctgtttgcaacagagcaattttacctgttttggttgcagaaaagtaagcaacggttaggattcttcgaatcccctc 17438303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 932884 - 932963
Alignment:
Q  86 caatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaat 165  Q
    |||||||||| ||||| |||||||||||| |||  | ||||||||| ||||||||||| ||||||||| ||| |||||||    
T  932884 caatttttatttgtttgcaacagagcaagtttacttgttttggttgcagaaaagtaagcagcggttagtattcttcgaat 932963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 4650364 - 4650447
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||| ||||| |||| ||||||| |||  | ||||||||| ||||||||||| | ||||||||||| ||||||||    
T  4650364 ttgcaatttttatctgtttgcaacggagcaagtttacctgttttggttgcagaaaagtaagcaacggttaggattcttcgaatc 4650447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 16245703 - 16245607
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||||||||||||||||||||| | ||| |||||||||||| |||  ||| ||||||||| ||||||||||| ||||||||| ||| | ||||||    
T  16245703 aagggttagagatttgcaatttttatctatttgcaacagagcaag-ttacctgt-ttttggttgcagaaaagtaagcagcggttagaattctccgaatc 16245607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 21325468 - 21325558
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcg 162  Q
    |||||||||||||| ||||||||||| | ||| |||||||||||| |||  || |||||||| ||||||||||| |||||||| |||| ||||    
T  21325468 aagggttagagatt-gcaatttttatctatttgcaacagagcaag-ttacctaatttggttgcagaaaagtaagtagcggttatgattcttcg 21325558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 41508493 - 41508588
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||||||||||||||||| ||| ||||| ||||| |||||| |||  | ||||||||| ||||||||||  |||||||| |||| || |||||    
T  41508493 aagggttagagatttgcaatttgtatctgtttgcaacaaagcaag-ttacatgttttggttgcagaaaagtaaccagcggttaagattctttgaatc 41508588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 12754881 - 12754800
Alignment:
Q  86 caatttttatatgtttacaacagagcaagcttatgta-ttttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||||| ||||| ||||||||| || |||  |  ||||||||| ||||||||||| ||||||||||||| ||||||||    
T  12754881 caatttttatttgtttgcaacagagctagtttacctggttttggttgcagaaaagtaagcagcggttaggattcttcgaatc 12754800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 19925588 - 19925508
Alignment:
Q  77 agagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggtt-gaagaaaagtaagaagcggttaggatt 157  Q
    ||||| |||||||||| |||||||| |||||||||||| |||  | |||||||| | ||||||||||| |||||||||||||    
T  19925588 agagacttgcaatttt-atatgtttgcaacagagcaagtttacctgttttggtttgcagaaaagtaagcagcggttaggatt 19925508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 18736645 - 18736559
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatt 157  Q
    |||||||||||||||  ||||||||| ||||| |||| || |||| |||  | ||||||||| |||||| |||| |||||||||||||    
T  18736645 aagggttagagatttttaatttttatttgtttgcaaccgaacaag-ttacctgttttggttgcagaaaaataagcagcggttaggatt 18736559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 3116386 - 3116349
Alignment:
Q  77 agagatttgcaatttttatatgtttacaacagagcaag 114  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  3116386 agagatttgcaatttttatctgtttgcaacagagcaag 3116349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 27413817 - 27413772
Alignment:
Q  123 ttttggttgaagaaaagtaagaagcggttaggatttttcgaatctc 168  Q
    ||||||||| ||||||||||| ||||||||||||| |||| |||||    
T  27413817 ttttggttgcagaaaagtaagcagcggttaggattcttcgtatctc 27413772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 8170050 - 8170098
Alignment:
Q  123 ttttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||| ||||||||| | ||||||||||||| |||||||| ||||    
T  8170050 ttttggttgcagaaaagtatgcagcggttaggattcttcgaatcccctc 8170098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 10745028 - 10745099
Alignment:
Q  71 agggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaag 143  Q
    ||||| ||||||||||||||||||| | ||| |||||||||||| |||  | ||||||||| ||||| |||||    
T  10745028 agggtaagagatttgcaatttttatctatttgcaacagagcaag-ttacctgttttggttgcagaaatgtaag 10745099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 17155931 - 17156001
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttagga 155  Q
    ||||||||||||| ||||| |||||||||||| |||  || |||||||| ||||||||||| |||| ||||||    
T  17155931 ttgcaatttttatctgtttgcaacagagcaag-ttaccta-tttggttgcagaaaagtaagtagcgattagga 17156001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 19908449 - 19908529
Alignment:
Q  87 aatttttatatgtttacaacagagcaagcttatgtatttt-ggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||| | ||| ||||| |||||| |||  |||||| ||||| ||||||||||| ||| ||||||||| ||||||||    
T  19908449 aatttttatttttttgcaacaaagcaagtttacctatttttggttgcagaaaagtaagcagcagttaggattcttcgaatc 19908529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 1848202 - 1848102
Alignment:
Q  70 aagggttagagat-ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctc 168  Q
    ||||||||||||  ||||||||||||| |||||  ||||||||||| |||  | ||||||||| ||||||||||| |||||||| |||| ||||||||||    
T  1848202 aagggttagagagcttgcaatttttatctgtttgaaacagagcaagtttacctgttttggttgcagaaaagtaagcagcggttatgattcttcgaatctc 1848103  T
Q  169 c 169  Q
    |    
T  1848102 c 1848102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 20582390 - 20582477
Alignment:
Q  79 agatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||||||| | ||| |||||||||||| |||  | ||||||||| ||||||||||| ||| ||||||||| ||||||||    
T  20582390 agatttgcaatttttatctatttgcaacagagcaagtttacctgttttggttgcagaaaagtaagcagcagttaggattcttcgaatc 20582477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 3329631 - 3329543
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatt 157  Q
    |||||||||||| ||||||||||||| ||||| ||||| |||||| |||  ||| ||||||||| ||||||||||| |||||||||||||    
T  3329631 aagggttagagagttgcaatttttatctgtttgcaacatagcaagtttacttgt-ttttggttgcagaaaagtaagcagcggttaggatt 3329543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 9131038 - 9131132
Alignment:
Q  72 gggttagagatttgcaatttttatatgtttacaacagagcaagctta-tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||||||||||||||||||| ||||| ||| |||||||| | | ||| ||||||||| | |||||||||  |||||||||||| ||||||||    
T  9131038 gggttagagatttgcaatttttatttgtttgcaatagagcaagttaactgt-ttttggttgcaaaaaagtaagctgcggttaggattcttcgaatc 9131132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 5108693 - 5108787
Alignment:
Q  73 ggttagagatttgcaatttttatatgtttacaacagagcaagcttatgt-attttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||| || |||||||||| ||||| ||| |||||||| |||  | |||||||||| ||||||||||| ||||||||||||| || |||||    
T  5108693 ggttagagagttacaatttttatctgtttgcaagagagcaagtttacttgattttggttgcagaaaagtaagcagcggttaggattctttgaatc 5108787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 8313364 - 8313293
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaag 143  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||| |||  ||||||||||| |||||||||||    
T  8313364 aagggttagagatt-gcaatttttatctgttttcaacagagcaag-ttacctattttggttgcagaaaagtaag 8313293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 8877559 - 8877648
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttg-aagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||| ||||| |||||||||||| |||  ||||||||||| || || |||||| ||||||||||||| || ||||| ||||    
T  8877559 ttgcaatttttatctgtttgcaacagagcaagtttacctattttggttgcaaaaatagtaagcagcggttaggattctttgaatcccctc 8877648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 7492236 - 7492160
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaag 146  Q
    |||||||||||||||||||||||||  ||||| |||||||||||| |||  ||| ||||||||| ||||||||||||||    
T  7492236 aagggttagagatttgcaatttttaactgtttgcaacagagcaag-ttacctgt-ttttggttgcagaaaagtaagaag 7492160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 13418660 - 13418743
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||| ||||| |||||||||||| |||  | ||||| ||| || |||||||| ||||||||||||| || |||||    
T  13418660 ttgcaatttttatctgtttgcaacagagcaagtttacctgttttgattgcagcaaagtaagcagcggttaggattctttgaatc 13418743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 18662579 - 18662661
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||| ||||| |||||||||||| |||  | ||||||||| ||||| ||||| ||||||||||| | ||||||||    
T  18662579 ttgcaatttttatttgtttgcaacagagcaag-ttacctgttttggttgcagaaatgtaagcagcggttaggactcttcgaatc 18662661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 39273150 - 39273048
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtatttt-ggttgaagaaaagtaagaagcggttaggatttttcgaatctc 168  Q
    |||||||| | | |||||| ||| || | ||| |||||||||||| |||  |||||| ||||| ||||||||||| ||||||||||||  ||||||||||    
T  39273150 aagggttataaagttgcaaatttaatctatttgcaacagagcaagtttacctatttttggttgcagaaaagtaagcagcggttaggatccttcgaatctc 39273051  T
Q  169 ctc 171  Q
    |||    
T  39273050 ctc 39273048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 2563943 - 2564040
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgt-attttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||||||| ||| ||||||||| ||||| |||||||||||| |||  |  ||| | ||| ||||||||||| ||||||||||||  ||||||||    
T  2563943 aagggttagagagttgaaatttttatctgtttgcaacagagcaagtttacctgctttagtttgcagaaaagtaagtagcggttaggatccttcgaatc 2564040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 11803211 - 11803295
Alignment:
Q  87 aatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||  ||||| |||||||||||| |||  | ||||||||| ||| ||||||  ||||||||||||| |||||||| ||||    
T  11803211 aatttttagttgtttgcaacagagcaagtttacctgttttggttgcagagaagtaaccagcggttaggattattcgaatcccctc 11803295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 16297806 - 16297724
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgta-ttttggttgaagaaaagtaagaagcggttag 153  Q
    |||||||||| ||| ||||||||||||||||| |||||||| ||| |||  || ||||||||| ||||||||||| |||||||||    
T  16297806 aagggttagaaatt-gcaatttttatatgtttgcaacagagtaag-ttacctatttttggttgcagaaaagtaagcagcggttag 16297724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 4786019 - 4786062
Alignment:
Q  123 ttttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||| ||||||||||| ||||||||||||| ||||||||    
T  4786019 ttttggttgcagaaaagtaagcagcggttaggattcttcgaatc 4786062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 165
Target Start/End: Original strand, 7397280 - 7397362
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgt-attttggttgaagaaaagtaagaagcggttaggatttttcgaat 165  Q
    ||||||||||||| ||||| ||||| | |||| |||| |  ||||||||| ||||||||||| ||||||||||||| |||||||    
T  7397280 ttgcaatttttatctgtttgcaacaaaacaag-ttatctgtttttggttgcagaaaagtaagcagcggttaggattcttcgaat 7397362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 2350720 - 2350682
Alignment:
Q  69 aaagggttagagatttgcaatttttatatgtttacaaca 107  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  2350720 aaagggttagagattttcaatttttatctgtttacaaca 2350682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 16365884 - 16365930
Alignment:
Q  123 ttttggttgaagaaaagtaagaagcggttaggatttttcgaatctcc 169  Q
    ||||||||| | ||||||||| ||||||||||||| |||||||||||    
T  16365884 ttttggttgcaaaaaagtaagcagcggttaggattcttcgaatctcc 16365930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 6042589 - 6042672
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagctta-tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||||||||| |||||||| ||| |||   | ||||||||| |||||| |||| ||||||||||||| || |||||    
T  6042589 ttgcaatttttatatgtttgcaacagag-aagtttacctttttttggttgcagaaaaataagcagcggttaggattctttgaatc 6042672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 7318400 - 7318443
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaag 114  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||    
T  7318400 aagggttagagatt-gcaatttttatctgtttgcaacagagcaag 7318443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 17216944 - 17217031
Alignment:
Q  69 aaagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggat 156  Q
    ||||||||||| | ||||||||||||| ||||| |||||||||||| |||  | ||||||||| ||||||||||| | ||||||||||    
T  17216944 aaagggttagaaagttgcaatttttatctgtttgcaacagagcaagtttacatgttttggttgtagaaaagtaagcaacggttaggat 17217031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 15164891 - 15164964
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaag 143  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||| |||  | ||||||||| |||||||||||    
T  15164891 aagggttagagagttgcaatttttatttgtttgcaacagagcaagtttacctgttttggttgcagaaaagtaag 15164964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 17337110 - 17337012
Alignment:
Q  69 aaagggttagagatttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| |||  ||| ||||||||| | ||||||||| || | ||| |||| ||||||||    
T  17337110 aaagggtttgagatttgcaatttttatctgtttacaacagagcaagtttacctgt-ttttggttgcataaaagtaagcagagattatgattcttcgaatc 17337012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 17709896 - 17709975
Alignment:
Q  87 aatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||||| |||||||||||| |||  | ||||||||| | ||||||||| ||| ||||||||| ||||||||    
T  17709896 aatttttatatgtttgcaacagagcaagtttacctgttttggttgcaaaaaagtaagtagctgttaggattcttcgaatc 17709975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 17672132 - 17672214
Alignment:
Q  73 ggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatt 157  Q
    ||||||||||| ||||||||||| ||||| |||||||||||| |||  |  |||||||| ||||||||||||||| |||||||||    
T  17672132 ggttagagatt-gcaatttttatctgtttgcaacagagcaag-ttacctggtttggttgcagaaaagtaagaagcagttaggatt 17672214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 13908992 - 13909076
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||| ||||| |||||||||||| |||  ||| ||||||||| | ||||||||| ||||||||||||| || |||||    
T  13908992 ttgcaatttttatctgtttgcaacagagcaagtttacctgt-ttttggttgcaaaaaagtaagcagcggttaggattctttgaatc 13909076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 24639435 - 24639338
Alignment:
Q  69 aaagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtatttt-ggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||||||| |||||| || ||||| |||||||||||| |||  | |||| ||||| ||||||||||| || |||||||||| || |||||    
T  24639435 aaagggttagagatttgtaatttt-atttgtttgcaacagagcaagtttacctgttttcggttgcagaaaagtaagcagtggttaggattctttgaatc 24639338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 19562136 - 19562047
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||| | ||| |||||||||||| |||  ||| ||||||||| ||||||||||  ||||||||| ||| |||||||| ||||    
T  19562136 ttgcaatttttatctctttgcaacagagcaagtttacctgt-ttttggttgcagaaaagtaatcagcggttagaattcttcgaatcccctc 19562047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 19492673 - 19492589
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||| ||||| ||||| ||||| |||||| |||  ||| ||||||||| |||||||||||  |||||||||||| ||||||||    
T  19492673 ttgcaatatttatttgtttgcaacacagcaagtttacatgt-ttttggttgcagaaaagtaagcggcggttaggattcttcgaatc 19492589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 26115871 - 26115783
Alignment:
Q  77 agagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||||||||| ||||| |||||||| ||| |||  | ||||||||| | ||| || || ||||||||||||| ||| ||||    
T  26115871 agagatttgcaatttttatctgtttgcaacagagtaag-ttacctgttttggttgcataaatgttagcagcggttaggattcttcaaatc 26115783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 14649021 - 14649064
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaag 114  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||||    
T  14649021 aagggttagagattt-caatttttatctgtttgcaacagagcaag 14649064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 16730374 - 16730330
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaag 114  Q
    |||||||||| | ||||||||||||| ||||| ||||||||||||    
T  16730374 aagggttagaaagttgcaatttttatctgtttgcaacagagcaag 16730330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 29242645 - 29242732
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcct 170  Q
    ||||||||||||| ||||| |||||||||||| |||  | ||||||||| | ||||||||||||||||||||||  || |||||||||    
T  29242645 ttgcaatttttatctgtttgcaacagagcaagtttacctgttttggttgcaaaaaagtaagaagcggttaggatactttgaatctcct 29242732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 9401634 - 9401732
Alignment:
Q  73 ggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||| ||||||||||||| ||||| |||||||| ||| |||  | ||||||||  | ||||||||| ||||||||||||| |||||||| ||||    
T  9401634 ggttagagagttgcaatttttatctgtttgcaacagagtaagtttacctgttttggttacaaaaaagtaagtagcggttaggattcttcgaatcccctc 9401732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 17610213 - 17610142
Alignment:
Q  87 aatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatt 157  Q
    ||||||||||||||| |||||||||||| |||  ||| ||||||||| ||||||||||| |||||||||||||    
T  17610213 aatttttatatgtttgcaacagagcaagtttacctgt-ttttggttgcagaaaagtaagcagcggttaggatt 17610142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 22623029 - 22623117
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    |||| |||||||||| ||| |||||||||||| |||  | ||||||||| ||||||||||| ||| ||||||||| ||| |||| ||||    
T  22623029 ttgccatttttatatatttgcaacagagcaagtttacctgttttggttgcagaaaagtaagcagctgttaggattcttcaaatcccctc 22623117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 28008231 - 28008329
Alignment:
Q  69 aaagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctc 168  Q
    ||||| ||||||||| ||||||||||| ||||| ||| |||||||  |||  | ||||||||| ||||||||||| ||||||||||||| || |||||||    
T  28008231 aaaggattagagatt-gcaatttttatctgtttccaatagagcaaa-ttacttgttttggttgcagaaaagtaagcagcggttaggattctttgaatctc 28008328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 16179144 - 16179219
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtatttt-ggttgaagaaaagtaagaagcggttaggatt 157  Q
    ||||||||||||| || || |||||||||||| |||  |||||| ||||| ||||||||||| |||||||||||||    
T  16179144 ttgcaatttttatctgattgcaacagagcaagtttacctatttttggttgcagaaaagtaagcagcggttaggatt 16179219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 51473846 - 51473780
Alignment:
Q  73 ggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagt 140  Q
    ||||||||||||||||||||||| ||||| ||||| | |||| |||| ||||||||||| ||||||||    
T  51473846 ggttagagatttgcaatttttatctgtttgcaacatatcaag-ttatctattttggttgcagaaaagt 51473780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 16069518 - 16069440
Alignment:
Q  87 aatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaat 165  Q
    ||||||||| || || |||||||||||| |||  | ||||||||| ||||||||||| ||| ||||||||| |||||||    
T  16069518 aatttttatctgcttgcaacagagcaagtttacctgttttggttgtagaaaagtaagcagcagttaggattcttcgaat 16069440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 22664333 - 22664417
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttagga 155  Q
    |||||||||  | ||||||||||||| |||||  ||||||||||| |||  | ||||||||| ||||||||||| |||||||||||    
T  22664333 aagggttagtaaattgcaatttttatttgtttgtaacagagcaag-ttacatgttttggttgcagaaaagtaagtagcggttagga 22664417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 14779704 - 14779764
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaag 143  Q
    ||||||||||||| ||||||||||| | |||| |||  | |||||||||||||||||||||    
T  14779704 ttgcaatttttatttgtttacaacatatcaagtttacttgttttggttgaagaaaagtaag 14779764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 17121421 - 17121377
Alignment:
Q  123 ttttggttgaagaaaagtaagaagcggttaggatttttcgaatct 167  Q
    ||||||||| ||||||||||| ||||||||||||| |||||||||    
T  17121421 ttttggttgcagaaaagtaagcagcggttaggattcttcgaatct 17121377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 17359286 - 17359388
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatct 167  Q
    |||||||||||| ||||||||||||| || |  ||||| |||||  |||  ||| ||||||||| | |||||||||| |||||||||||| ||||||||     
T  17359286 aagggttagagagttgcaatttttatctgctggcaacatagcaaatttacctgt-ttttggttgcataaaagtaagatgcggttaggattcttcgaatcc 17359384  T
Q  168 cctc 171  Q
    ||||    
T  17359385 cctc 17359388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 18100985 - 18100891
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||||| ||| ||||||||||| ||||| ||||| |||||| |||  | ||||||||| ||||||||||| |||||||| |||| || |||||    
T  18100985 aagggttagaaatt-gcaatttttatctgtttgcaacatagcaag-ttacatgttttggttgcagaaaagtaagcagcggttatgattatttgaatc 18100891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 18825782 - 18825870
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||| ||||||||||| |||||  |||  | ||||||||| ||||||||||| |||| | |||||| || ||||| ||||    
T  18825782 ttgcaatttttatctgtttacaacaaagcaaatttacttgttttggttgtagaaaagtaagcagcgataaggattctttgaatcccctc 18825870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 23179923 - 23180011
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||| ||||||||| | | |||  |||  | ||||||||| ||||||||||| |||||| |||||| |||||||| ||||    
T  23179923 ttgcaatttttatctgtttacaaaataacaattttaccttttttggttggagaaaagtaagcagcggtaaggattattcgaatcccctc 23180011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 13345258 - 13345215
Alignment:
Q  123 ttttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||| |||||||||||  ||||||||||||||||||||||    
T  13345258 ttttggtttaagaaaagtaaacagcggttaggatttttcgaatc 13345215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 21334638 - 21334595
Alignment:
Q  123 ttttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||    
T  21334638 ttttggttgaagaaaagtaaacagcggttaggattcttcgaatc 21334595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 21449218 - 21449299
Alignment:
Q  86 caatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||||| ||||| ||||| |||||| |||  ||| |||||| || ||||||||||| ||||||||||||| ||||||||    
T  21449218 caatttttatctgtttgcaacatagcaagtttaactgt-ttttggatgcagaaaagtaagcagcggttaggattcttcgaatc 21449299  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 31236023 - 31235935
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatt 157  Q
    |||||||||||| ||||||||||||| | ||| |||||||||||| |||  ||| ||||||||| | ||||||||| | |||||| ||||    
T  31236023 aagggttagagagttgcaatttttatctctttgcaacagagcaagtttacttgt-ttttggttgcataaaagtaagcaacggttaagatt 31235935  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 12208754 - 12208823
Alignment:
Q  97 tgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||| |||||||||||| |||  | |||| | || ||||||||||| ||||||||||||| ||||||||    
T  12208754 tgtttgcaacagagcaagtttacctgttttagctgcagaaaagtaagcagcggttaggattcttcgaatc 12208823  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 25405591 - 25405517
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatt 157  Q
    ||||||||||||| ||||| |||||||||||| |||  ||| ||||||||| || |||||||| |||||||||||||    
T  25405591 ttgcaatttttatttgtttgcaacagagcaagtttacttgt-ttttggttgcag-aaagtaagcagcggttaggatt 25405517  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 16787693 - 16787657
Alignment:
Q  77 agagatttgcaatttttatatgtttacaacagagcaa 113  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  16787693 agagatttgcaatttttatatgtttgcaacatagcaa 16787657  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 16916866 - 16916818
Alignment:
Q  123 ttttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||| ||||||||||| ||||| ||||||| |||||||| ||||    
T  16916866 ttttggttgcagaaaagtaagcagcgggtaggattcttcgaatcccctc 16916818  T

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Target: scaffold0671 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 569 - 657
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||| ||||| ||||||||| |  |||  | ||||||||| ||||||||||| ||||||||||||| |||||||| ||||    
T  569 ttgcaatttttatctgtttgcaacagagcgaatttacctgttttggttgcagaaaagtaagcagcggttaggattcttcgaatcccctc 657  T

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Target: scaffold0102 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 35663 - 35759
Alignment:
Q  69 aaagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||||||||||||||||| ||| | ||||| |||||| |||  | ||||||||| ||||| ||||| |||||||| |||| ||| ||||    
T  35663 aaagggttagagatttgcaatttttatttgtctgcaacaaagcaag-ttacctgttttggttgcagaaaggtaagcagcggttaagattcttcaaatc 35759  T

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Target: scaffold0638 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 783 - 701
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaa 164  Q
    ||||||||||||| ||||| |||||||| ||| |||  ||| ||||||||| |||||||||||||||||||| |||| ||||||    
T  783 ttgcaatttttatctgtttgcaacagagaaagtttacctgt-ttttggttgcagaaaagtaagaagcggttaagattcttcgaa 701  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 16404039 - 16404127
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||| ||||| ||||||||| |  |||  |||||||| || |||||| |||| ||||||||||||| |||||||| ||||    
T  16404039 ttgcaatttttatttgtttgcaacagagcgaatttacctattttggctgcagaaaaataagcagcggttaggattcttcgaatcccctc 16404127  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 24110623 - 24110547
Alignment:
Q  90 ttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||| ||||| |||||||| ||| |||| | ||||||||| ||||||||||| || |||||||||| ||||||||    
T  24110623 ttttatctgtttgcaacagaggaagtttatctgttttggttgcagaaaagtaagcaggggttaggattattcgaatc 24110547  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 18569193 - 18569278
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctc 168  Q
    |||| |||||||| ||||| ||||| ||| || |||  | ||||||||| ||||||||||| |||||||| ||||||| |||||||    
T  18569193 ttgctatttttatctgtttgcaacatagcgagtttacttgttttggttgcagaaaagtaagcagcggttacgattttttgaatctc 18569278  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 19264173 - 19264258
Alignment:
Q  87 aatttttatatgtttacaacagagcaagcttatgtatttt-ggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||| | ||| |||||||||||| |||| |||||| ||||||| ||| ||||| |||||| ||| ||||||||||| ||||    
T  19264173 aatttttatctttttgcaacagagcaagtttatctatttttggttgaaaaaaggtaagcagcggtaaggctttttcgaatcccctc 19264258  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 13314962 - 13314869
Alignment:
Q  74 gttagagatttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||||||| ||||||||||||||||||| |||| || |||  |||  ||| ||||||||| ||||||||||| | |||||| |||| ||||||||    
T  13314962 gttagagagttgcaatttttatatgtttgcaactgaacaaatttacctgt-ttttggttgcagaaaagtaagcaacggttaagattcttcgaatc 13314869  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 24114244 - 24114161
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||| ||||| || ||||||||| |||  | |||||||    |||||||||| ||||||||||||| ||||||||    
T  24114244 ttgcaatttttatctgtttgcagcagagcaagtttacctgttttggtatctgaaaagtaagcagcggttaggattcttcgaatc 24114161  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 24269775 - 24269818
Alignment:
Q  123 ttttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||| ||||||||||| ||||||||||||| ||||||||    
T  24269775 ttttggttgcagaaaagtaagcagcggttaggattcttcgaatc 24269818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 44010984 - 44010903
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagct-tatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaa 164  Q
    ||||||||||||||||||| ||||||| |||| |  |||| ||||||||| |||| |||||| |||||||| |||| ||||||    
T  44010984 ttgcaatttttatatgtttgcaacagaacaagttacatgt-ttttggttgcagaagagtaagtagcggttaagattcttcgaa 44010903  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 26394644 - 26394576
Alignment:
Q  98 gtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    |||| ||||| |||||| |||  | ||||||||| ||||||||||| | ||||||||||| ||||||||    
T  26394644 gtttgcaacaaagcaagtttacctgttttggttgcagaaaagtaagcaacggttaggattcttcgaatc 26394576  T

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Target: scaffold0056 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 21403 - 21486
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||| ||||| |||||||| ||| |||  | ||||||||  ||||||||||| |||| |||||||| ||||||||    
T  21403 ttgcaatttttatttgtttgcaacagaggaagtttacctgttttggtttcagaaaagtaagtagcgattaggattcttcgaatc 21486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 25113 - 25201
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||| | | ||| |||||||||||| |||  | ||||||||| ||||||||||| | ||||||||||| ||| |||| ||||    
T  25113 ttgcaatttttctctatttgcaacagagcaagtttacctgttttggttgcagaaaagtaagcaacggttaggattcttcaaatcccctc 25201  T

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Target: scaffold0155 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 35968 - 35871
Alignment:
Q  69 aaagggttagagatttgcaatttttatatgtttacaacagagcaagcttatgt-attttggttgaagaaaagtaagaagcggttaggatttttcgaatc 166  Q
    ||||||||||||||||||||||||||| | |||  |||| || ||| |||  | |||||||||| ||||||||||| ||||||||||||| || |||||    
T  35968 aaagggttagagatttgcaatttttatctatttggaacaaagaaag-ttacctgattttggttgcagaaaagtaagcagcggttaggattcttagaatc 35871  T

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Target: scaffold0054 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 72148 - 72237
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgta-ttttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    ||||||||||||| ||||| |||||||||||| ||| ||| |||| |||| ||||||||||| ||  || |||||| |||||||| ||||    
T  72148 ttgcaatttttatctgtttgcaacagagcaagtttacgtatttttagttgcagaaaagtaagcagtagtaaggattcttcgaatcccctc 72237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 39724 - 39792
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagcttatgtattttggttgaagaaaagtaagaagcggtta 152  Q
    ||||||||||||| ||||| |||||||||||| |||  | ||||||||| ||||||||||| ||||||||    
T  39724 ttgcaatttttatctgtttgcaacagagcaag-ttacctgttttggttgcagaaaagtaagcagcggtta 39792  T

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Target: scaffold0034 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 76542 - 76631
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatttttcgaatctcctc 171  Q
    |||||| |||||||||||||||||| |||||  |||  ||| ||||||||| ||||||||||| | || |||||||| |||||||| ||||    
T  76542 ttgcaaattttatatgtttacaacatagcaaatttacctgt-ttttggttgtagaaaagtaagcaccgattaggattcttcgaatcccctc 76631  T

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Target: scaffold0035 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 70050 - 70125
Alignment:
Q  83 ttgcaatttttatatgtttacaacagagcaagctta--tgtattttggttgaagaaaagtaagaagcggttaggatt 157  Q
    ||||||||||||| ||||| ||| |||||||| |||  ||| ||||||||| ||||||||||| ||| |||||||||    
T  70050 ttgcaatttttatttgtttgcaatagagcaagtttacctgt-ttttggttgtagaaaagtaagcagcagttaggatt 70125  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 43199 - 43156
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaag 114  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||    
T  43199 aagggttagagatt-gcaatttttatctgtttgcaacagagcaag 43156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 168271 - 168228
Alignment:
Q  70 aagggttagagatttgcaatttttatatgtttacaacagagcaag 114  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||||    
T  168271 aagggttagagattt-caatttttatctgtttgcaacagagcaag 168228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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