View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6887_high_1 (Length: 625)

Name: NF6887_high_1
Description: NF6887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6887_high_1
NF6887_high_1
[»] chr5 (5 HSPs)
chr5 (15-616)||(39952363-39952965)
chr5 (209-330)||(23920117-23920238)
chr5 (307-402)||(22917308-22917404)
chr5 (307-405)||(13596832-13596931)
chr5 (312-378)||(1685106-1685172)
[»] chr3 (3 HSPs)
chr3 (402-578)||(50416814-50416993)
chr3 (312-392)||(42614280-42614360)
chr3 (344-405)||(41053754-41053816)
[»] chr2 (5 HSPs)
chr2 (15-134)||(37222004-37222123)
chr2 (295-404)||(25123459-25123571)
chr2 (314-405)||(45003691-45003783)
chr2 (326-392)||(15084343-15084409)
chr2 (315-367)||(44800576-44800628)
[»] scaffold0001 (1 HSPs)
scaffold0001 (209-387)||(12729-12907)
[»] chr4 (5 HSPs)
chr4 (15-122)||(34230119-34230226)
chr4 (314-405)||(5482954-5483046)
chr4 (314-405)||(1694811-1694903)
chr4 (313-392)||(36678774-36678851)
chr4 (328-392)||(1967467-1967531)
[»] chr8 (6 HSPs)
chr8 (207-377)||(24847957-24848127)
chr8 (20-118)||(30339704-30339802)
chr8 (209-330)||(30344377-30344498)
chr8 (293-405)||(28940743-28940856)
chr8 (314-405)||(2680265-2680357)
chr8 (350-405)||(30344500-30344557)
[»] chr6 (11 HSPs)
chr6 (209-330)||(18985279-18985400)
chr6 (281-377)||(8746751-8746847)
chr6 (312-405)||(2627674-2627763)
chr6 (346-405)||(11681699-11681760)
chr6 (313-405)||(22978347-22978435)
chr6 (313-405)||(23809968-23810056)
chr6 (310-392)||(34218741-34218820)
chr6 (307-378)||(22721094-22721165)
chr6 (326-405)||(1363155-1363235)
chr6 (312-392)||(11168835-11168915)
chr6 (209-261)||(11682650-11682702)
[»] chr7 (8 HSPs)
chr7 (209-347)||(25350576-25350714)
chr7 (209-347)||(25356270-25356408)
chr7 (327-392)||(33097879-33097944)
chr7 (307-402)||(25731043-25731139)
chr7 (327-387)||(31299417-31299477)
chr7 (344-405)||(33105296-33105358)
chr7 (326-378)||(4478967-4479019)
chr7 (326-403)||(21895080-21895159)
[»] chr1 (3 HSPs)
chr1 (307-405)||(29693301-29693400)
chr1 (312-405)||(52037420-52037514)
chr1 (312-392)||(13624230-13624309)


Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 15 - 616
Target Start/End: Original strand, 39952363 - 39952965
Alignment:
Q  15 agatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgta 114  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952363 agatgtttcactataacgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgta 39952462  T
Q  115 tatcctttccgcagatgtcaatggatatggtgtgagtagattgaactctggttttgttggtgctctaatttcgctaatcacttcatttttgg-agcatct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  39952463 tatcctttccgcagatgtcaatggatatggtgtgagtagattgaactctggttttgttggtgctttaatttcgctaatcacttcatttttggcagcatct 39952562  T
Q  214 atatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggattatgc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39952563 atatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgctttagaccatgcatcacaaatattcggattatgc 39952662  T
Q  314 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaaatgagaat 413  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39952663 gaccttcgttctcaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccgttagagcaaatttttaaaaagtacgtaattcaaatgagaat 39952762  T
Q  414 aaatcatcgattgtataaactttgttttgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggatatatctgataat 513  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952763 aaatcatcgattgtataaactttgttgtgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggatatatctgataat 39952862  T
Q  514 gtgacatggatgtgtctattattttagtgatatattgatgagaaagctagcatctaacttaactannnnnnnnnnncattcgcagagttattctttttca 613  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           ||||||||||||||||||||||||    
T  39952863 gtgacatggatgtgtctattattttagtgatatattgatgtgaaagctagcatctaacttaactatttttttttttcattcgcagagttattctttttca 39952962  T
Q  614 ttt 616  Q
    |||    
T  39952963 ttt 39952965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 209 - 330
Target Start/End: Original strand, 23920117 - 23920238
Alignment:
Q  209 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 308  Q
    ||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  23920117 catctatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaatgccatgtcttagaccatgcatcacaaatattcggat 23920216  T
Q  309 tatgcgaccttcgttcccaaat 330  Q
    |||| ||||||||||| |||||    
T  23920217 tatgtgaccttcgttcacaaat 23920238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 307 - 402
Target Start/End: Original strand, 22917308 - 22917404
Alignment:
Q  307 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaatt 402  Q
    ||||||| |||||||||| |||||||| ||| |||||||||||   ||||||||||||||| ||| |||||||||| |||||||||| |||||||||    
T  22917308 attatgcaaccttcgttctcaaatttacgaagaatggcaatgtcgcgtaatttgaacatctatcctttagagcaaattttttaaaaattacgtaatt 22917404  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 307 - 405
Target Start/End: Original strand, 13596832 - 13596931
Alignment:
Q  307 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaattcaa 405  Q
    ||||||| |||||||||| |||||||| |||  ||||||||||    |||||||||||||||||| |||||||||  |||||||||| ||||||||||||    
T  13596832 attatgcaaccttcgttctcaaatttacgaagcatggcaatgtcgcataatttgaacatctctcctttagagcaatttttttaaaaaatacgtaattcaa 13596931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 1685172 - 1685106
Alignment:
Q  312 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 378  Q
    ||||||||||||| |||| ||| ||| ||| ||||||||| ||||||||||||||||||| ||||||    
T  1685172 gcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcctttagag 1685106  T

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Target: chr3 (Bit Score: 122; Significance: 3e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 402 - 578
Target Start/End: Complemental strand, 50416993 - 50416814
Alignment:
Q  402 tcaaatgagaataaatcatcgattgtataaactttgttttgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggat 501  Q
    |||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| ||    
T  50416993 tcaaatgagaataaattatagattgtataaactttgttgtgatggttaacatcagaaaccattgctttcaacatatctgggaaagactaaaagtttgcat 50416894  T
Q  502 atatctgataatgtgacatggatgtgtc---tattattttagtgatatattgatgagaaagctagcatctaacttaacta 578  Q
    ||||||||||| ||||||||| ||||||   ||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  50416893 atatctgataacgtgacatggctgtgtcatttattattttagtgttatattgatgtgaaagctagcatctaacttaacta 50416814  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 392
Target Start/End: Complemental strand, 42614360 - 42614280
Alignment:
Q  312 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 392  Q
    ||||||||||||| |||||||  ||| |||  |||||||  ||||||||||||||||| | ||| || |||||||||||||    
T  42614360 gcgaccttcgttctcaaattttcgaagaataacaatgtttcgtaatttgaacatctcttctttaaagtaaatttttaaaaa 42614280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 344 - 405
Target Start/End: Original strand, 41053754 - 41053816
Alignment:
Q  344 caatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaattcaa 405  Q
    |||||||| |||||||||||||||| |  |||||||||| |||||||||| || |||||||||    
T  41053754 caatgttccgtaatttgaacatctcacatttagagcaaattttttaaaaaatatgtaattcaa 41053816  T

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Target: chr2 (Bit Score: 108; Significance: 6e-54; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 37222004 - 37222123
Alignment:
Q  15 agatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgta 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37222004 agatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgataattgtttttgta 37222103  T
Q  115 tatcctttccgcagatgtca 134  Q
    |||||||| |||||||||||    
T  37222104 tatccttttcgcagatgtca 37222123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 295 - 404
Target Start/End: Complemental strand, 25123571 - 25123459
Alignment:
Q  295 acaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt---aaaa 391  Q
    |||||| |||||||||||| |||||||||| ||| |||| ||| |||| |||||||| ||||||||||||||||||  || ||||||||||||   ||||    
T  25123571 acaaatgttcggattatgcaaccttcgttctcaagtttacgaagaatgacaatgttccgtaatttgaacatctctcatttggagcaaatttttttaaaaa 25123472  T
Q  392 agtacgtaattca 404  Q
    | |||||||||||    
T  25123471 aatacgtaattca 25123459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 405
Target Start/End: Complemental strand, 45003783 - 45003691
Alignment:
Q  314 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttt-taaaaagtacgtaattcaa 405  Q
    ||||||||||| |||||||||||| || | |||| ||| ||||||||||||||| ||| ||||||||||||||  ||||| ||||||||||||    
T  45003783 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaattttaaaaaaaatacgtaattcaa 45003691  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 392
Target Start/End: Complemental strand, 15084409 - 15084343
Alignment:
Q  326 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 392  Q
    |||||||| ||| ||| ||||||||| ||||||||||||| ||||| |||||| ||| |||||||||    
T  15084409 caaatttacgaagaatagcaatgttccgtaatttgaacatatctcctttagagtaaaattttaaaaa 15084343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 44800576 - 44800628
Alignment:
Q  315 accttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatct 367  Q
    |||||||||| |||||||| ||| ||| ||||||||  |||||||||||||||    
T  44800576 accttcgttctcaaatttacgaagaatagcaatgtttcgtaatttgaacatct 44800628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 209 - 387
Target Start/End: Original strand, 12729 - 12907
Alignment:
Q  209 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 308  Q
    |||||| |||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||  ||||| ||||||||||||||||||||||    
T  12729 catctacatttctgctgcagtacattatgtatgtaatgacaatgattgttatgttatcttttatgccatgccttagatcatgcatcacaaatattcggat 12828  T
Q  309 tatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt 387  Q
    ||||||||||||||||  ||||||| ||| ||||||||| ||   | |||||||||||||||| |||||| || |||||    
T  12829 tatgcgaccttcgttcttaaatttacgaagaatggcaatatttcctcatttgaacatctctcctttagagtaatttttt 12907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 4e-49; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 34230226 - 34230119
Alignment:
Q  15 agatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgta 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34230226 agatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgta 34230127  T
Q  115 tatccttt 122  Q
     |||||||    
T  34230126 catccttt 34230119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 314 - 405
Target Start/End: Original strand, 5482954 - 5483046
Alignment:
Q  314 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt-aaaaagtacgtaattcaa 405  Q
    ||||||||||| |||||||||||| || | |||| ||| ||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||    
T  5482954 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaa 5483046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 314 - 405
Target Start/End: Original strand, 1694811 - 1694903
Alignment:
Q  314 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaag-tacgtaattcaa 405  Q
    ||||||||||| |||||||| ||| ||| ||||||||| || |||||||||| ||||| ||||||||| ||||| ||||| | ||||||||||    
T  1694811 gaccttcgttctcaaatttacgaagaatagcaatgttccgtgatttgaacatatctcctttagagcaatttttttaaaagatgcgtaattcaa 1694903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 313 - 392
Target Start/End: Complemental strand, 36678851 - 36678774
Alignment:
Q  313 cgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 392  Q
    |||||||||||| |||||||| ||||||| |||||||| |||||||| |||||||||   |||||| |||||||||||||    
T  36678851 cgaccttcgttctcaaatttacgaaaaatagcaatgttttgtaatttaaacatctct--tttagagtaaatttttaaaaa 36678774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 328 - 392
Target Start/End: Complemental strand, 1967531 - 1967467
Alignment:
Q  328 aatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 392  Q
    |||||| ||| |||| |||||||| ||||||||||||| ||||  ||| ||||||||||||||||    
T  1967531 aatttacgaagaatgacaatgttccgtaatttgaacatttctcttttaaagcaaatttttaaaaa 1967467  T

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Target: chr8 (Bit Score: 95; Significance: 4e-46; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 207 - 377
Target Start/End: Complemental strand, 24848127 - 24847957
Alignment:
Q  207 agcatctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcgg 306  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||  |||||||| ||||||| |||  |||  ||||||||||||||  ||||||||||    
T  24848127 agcatctatatttgtgctgcagtacgttatgtatgtaatgacaatggttgttatgttatctttgatgttatgccttagaccatgcatcgtaaatattcgg 24848028  T
Q  307 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattaga 377  Q
    |||||||||||||||||| |||||||| ||| |||| ||||||| | |||||||||||||||||| |||||    
T  24848027 attatgcgaccttcgttctcaaatttacgaagaatgacaatgttttataatttgaacatctctcctttaga 24847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 30339704 - 30339802
Alignment:
Q  20 tttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgattattgtttttgtatatc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30339704 tttcactataatgggtcattgtacttcaagcagatgtttgacaagttataacaggtcagtagtatctcaaactcttgctgattattgtttttgtatatc 30339802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 209 - 330
Target Start/End: Original strand, 30344377 - 30344498
Alignment:
Q  209 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 308  Q
    ||||||||||| || || ||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30344377 catctatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatcttttatgccatgtcttagaccatgcatcacaaatattcggat 30344476  T
Q  309 tatgcgaccttcgttcccaaat 330  Q
    |||| ||||||| ||| |||||    
T  30344477 tatgtgaccttcattcacaaat 30344498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 293 - 405
Target Start/End: Complemental strand, 28940856 - 28940743
Alignment:
Q  293 tcacaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaa 391  Q
    |||||||||||| ||||||| |||||| |||| ||| |||| ||| |||| |||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  28940856 tcacaaatattcagattatgggacctttgttctcaagtttacgaagaatgacaatgttctgtaatttgaacatctctcctttagaacaaattttttaaaa 28940757  T
Q  392 agtacgtaattcaa 405  Q
    ||||||||||||||    
T  28940756 agtacgtaattcaa 28940743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 314 - 405
Target Start/End: Complemental strand, 2680357 - 2680265
Alignment:
Q  314 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttta-aaaagtacgtaattcaa 405  Q
    ||||||||||| |||||||||||| || | |||| ||| ||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||    
T  2680357 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaa 2680265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 30344500 - 30344557
Alignment:
Q  350 tctgtaatttgaacatctctccattagagcaaa--tttttaaaaagtacgtaattcaa 405  Q
    |||||||||||||||||||||| ||||||| ||  ||||| |||| ||||||||||||    
T  30344500 tctgtaatttgaacatctctcctttagagctaatttttttgaaaaatacgtaattcaa 30344557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 209 - 330
Target Start/End: Complemental strand, 18985400 - 18985279
Alignment:
Q  209 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 308  Q
    ||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18985400 catctatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaatgccatgtcttagaccatgcatcacaaatattcggat 18985301  T
Q  309 tatgcgaccttcgttcccaaat 330  Q
    |||| ||||||||||| |||||    
T  18985300 tatgtgaccttcgttcacaaat 18985279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 377
Target Start/End: Complemental strand, 8746847 - 8746751
Alignment:
Q  281 ttagaccatgcatcacaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattaga 377  Q
    ||||||||| ||||  |||||||| |||||||||||||| |||| |||||||| ||| |||| ||||||||  ||||||||||||| |||| |||||    
T  8746847 ttagaccatacatcgtaaatattcagattatgcgacctttgttctcaaatttacgaagaatgacaatgttccataatttgaacatccctcctttaga 8746751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 312 - 405
Target Start/End: Complemental strand, 2627763 - 2627674
Alignment:
Q  312 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 405  Q
    ||||||||||||| |||||||| ||| ||| |||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  2627763 gcgaccttcgttctcaaatttacgaagaatagcaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 2627674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 346 - 405
Target Start/End: Complemental strand, 11681760 - 11681699
Alignment:
Q  346 atgttctgtaatttgaacatctctccattagagcaaattttt--aaaaagtacgtaattcaa 405  Q
    |||||||||||||||||||||||||| |||||| || |||||  ||||||||||||||||||    
T  11681760 atgttctgtaatttgaacatctctcctttagagtaatttttttaaaaaagtacgtaattcaa 11681699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 405
Target Start/End: Complemental strand, 22978435 - 22978347
Alignment:
Q  313 cgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 405  Q
    |||||||||||| |||||||| ||| ||   ||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  22978435 cgaccttcgttctcaaatttacgaagaacaacaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 22978347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 405
Target Start/End: Original strand, 23809968 - 23810056
Alignment:
Q  313 cgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 405  Q
    |||||||||||| |||||||| ||| ||   ||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  23809968 cgaccttcgttctcaaatttacgaagaacaacaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 23810056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 310 - 392
Target Start/End: Original strand, 34218741 - 34218820
Alignment:
Q  310 atgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 392  Q
    ||||||||||||||  | |||||||||| |||  |||| ||| ||||||||||||||||||| |   ||||||||||||||||    
T  34218741 atgcgaccttcgttttcgaatttatgaagaattacaatattccgtaatttgaacatctctcctt---agcaaatttttaaaaa 34218820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 22721094 - 22721165
Alignment:
Q  307 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 378  Q
    ||||||| |||| ||||| |||||| | ||| |||||||||||   ||||||||||||||||||| ||||||    
T  22721094 attatgcaacctacgttctcaaattaacgaagaatggcaatgtcgcgtaatttgaacatctctcctttagag 22721165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 405
Target Start/End: Original strand, 1363155 - 1363235
Alignment:
Q  326 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag-caaatttttaaaaagtacgtaattcaa 405  Q
    |||||||| ||| |||  |||||||| ||||||||||||| ||||| ||||||  ||| ||||||||| || |||||||||    
T  1363155 caaatttacgaagaataacaatgttccgtaatttgaacatatctcctttagagtaaaaattttaaaaaatatgtaattcaa 1363235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 392
Target Start/End: Original strand, 11168835 - 11168915
Alignment:
Q  312 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 392  Q
    ||||||||||||| |||| ||| ||| |||   ||||||| |||||||||||||| |||  |||||| || ||||||||||    
T  11168835 gcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttttagagaaattttttaaaaa 11168915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 11682702 - 11682650
Alignment:
Q  209 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatg 261  Q
    ||||||||| | || |||||||||||||||||| |||||||||| || |||||    
T  11682702 catctatatgtgtgttgcagtacattatgtatgaaatgacaatagttattatg 11682650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 209 - 347
Target Start/End: Complemental strand, 25350714 - 25350576
Alignment:
Q  209 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 308  Q
    ||||||||||||||||| |||||||||| |||||||| ||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  25350714 catctatatttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcatgccttagaccatgcatcacaaatattcggat 25350615  T
Q  309 tatgcgaccttcgttcccaaatttatgaaaaatggcaat 347  Q
    |||||| ||||||||| |||||||| ||| |||| ||||    
T  25350614 tatgcgtccttcgttctcaaatttacgaagaatgacaat 25350576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 209 - 347
Target Start/End: Complemental strand, 25356408 - 25356270
Alignment:
Q  209 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 308  Q
    ||||||||||||||||| |||||||||| |||||||| ||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  25356408 catctatatttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcatgccttagaccatgcatcacaaatattcggat 25356309  T
Q  309 tatgcgaccttcgttcccaaatttatgaaaaatggcaat 347  Q
    |||||| ||||||||| |||||||| ||| |||| ||||    
T  25356308 tatgcgtccttcgttctcaaatttacgaagaatgacaat 25356270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 33097944 - 33097879
Alignment:
Q  327 aaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 392  Q
    ||||||| ||| |||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  33097944 aaatttacgaagaatgacaatgttccgtaatttgaacatctctcctttagagcaaattttttaaaa 33097879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 307 - 402
Target Start/End: Original strand, 25731043 - 25731139
Alignment:
Q  307 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaatt 402  Q
    ||||||| |||||||||| |||||||| ||| | || ||||||   ||||||||||||||||||| |||||||||  |||||||||| |||||||||    
T  25731043 attatgcaaccttcgttctcaaatttacgaagactgacaatgtcgcgtaatttgaacatctctcctttagagcaatttttttaaaaaatacgtaatt 25731139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 31299417 - 31299477
Alignment:
Q  327 aaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt 387  Q
    ||||||||||| |||| |||||||| ||||||| ||||||||||| ||||| |||||||||    
T  31299417 aaatttatgaagaatgacaatgttccgtaattttaacatctctcctttagaacaaattttt 31299477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 405
Target Start/End: Original strand, 33105296 - 33105358
Alignment:
Q  344 caatgttctgtaatttgaacatctctccattagagcaaattttt-aaaaagtacgtaattcaa 405  Q
    |||||||| ||||||||||||||||||  || |||||||||||| ||||| ||||||||||||    
T  33105296 caatgttccgtaatttgaacatctctcttttggagcaaatttttaaaaaaatacgtaattcaa 33105358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 4479019 - 4478967
Alignment:
Q  326 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 378  Q
    |||||||| ||| | | |||||||||||||||||||| |||||||| ||||||    
T  4479019 caaatttacgaagattagcaatgttctgtaatttgaatatctctcctttagag 4478967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 403
Target Start/End: Original strand, 21895080 - 21895159
Alignment:
Q  326 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa--tttttaaaaagtacgtaattc 403  Q
    |||||||| ||| ||| | ||||||| ||||||||||||| ||||| |||||| |||  |||||||||| || |||||||    
T  21895080 caaatttacgaagaatagtaatgttccgtaatttgaacatatctcctttagagtaaaattttttaaaaaatatgtaattc 21895159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 307 - 405
Target Start/End: Original strand, 29693301 - 29693400
Alignment:
Q  307 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaattcaa 405  Q
    ||||||| |||||||||| |||||||| ||| |||||||||||   ||||||||||||||||| | ||||| |||| |||||||||| ||||||||||||    
T  29693301 attatgcaaccttcgttctcaaatttacgaagaatggcaatgtcgcgtaatttgaacatctcttctttagaacaaattttttaaaaaatacgtaattcaa 29693400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 312 - 405
Target Start/End: Complemental strand, 52037514 - 52037420
Alignment:
Q  312 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaattcaa 405  Q
    ||||||||||||| |||| ||| ||| ||| ||||||||| ||||||||||||||||||| |||||| ||  |||||||||| ||| ||||||||    
T  52037514 gcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcctttagaggaatttttttaaaaaatacataattcaa 52037420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 312 - 392
Target Start/End: Original strand, 13624230 - 13624309
Alignment:
Q  312 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 392  Q
    ||||||||||||| |||| ||| ||| ||| | ||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  13624230 gcgaccttcgttctcaaaattacgaagaataggaatgttccgtaatttgaacatctctcctttagag-aaatttttaaaaa 13624309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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