View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6887_high_4 (Length: 290)

Name: NF6887_high_4
Description: NF6887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6887_high_4
NF6887_high_4
[»] chr2 (6 HSPs)
chr2 (1-275)||(18058332-18058611)
chr2 (74-149)||(8033243-8033318)
chr2 (153-270)||(18061999-18062113)
chr2 (72-149)||(8793874-8793951)
chr2 (69-123)||(31915042-31915096)
chr2 (68-125)||(19028419-19028476)
[»] chr6 (4 HSPs)
chr6 (69-139)||(2839061-2839131)
chr6 (69-125)||(23131437-23131493)
chr6 (91-161)||(12677904-12677974)
chr6 (69-119)||(31490414-31490464)
[»] chr5 (4 HSPs)
chr5 (69-125)||(33085339-33085395)
chr5 (69-149)||(35626650-35626730)
chr5 (69-147)||(14156967-14157045)
chr5 (69-147)||(42641177-42641255)
[»] chr7 (2 HSPs)
chr7 (69-155)||(23070184-23070270)
chr7 (69-154)||(8656357-8656443)
[»] chr3 (2 HSPs)
chr3 (69-144)||(3432674-3432749)
chr3 (74-122)||(19202183-19202231)
[»] chr8 (5 HSPs)
chr8 (69-147)||(41168600-41168678)
chr8 (72-147)||(16345984-16346059)
chr8 (69-138)||(41086803-41086872)
chr8 (69-149)||(27982373-27982453)
chr8 (69-149)||(28039675-28039755)
[»] chr4 (8 HSPs)
chr4 (70-132)||(36162133-36162195)
chr4 (69-125)||(2392580-2392636)
chr4 (72-122)||(41260001-41260051)
chr4 (69-118)||(14124264-14124313)
chr4 (72-152)||(16502381-16502461)
chr4 (75-131)||(37645321-37645377)
chr4 (69-121)||(37858267-37858319)
chr4 (74-122)||(45921337-45921385)
[»] chr1 (1 HSPs)
chr1 (71-125)||(38169117-38169171)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 18058611 - 18058332
Alignment:
1 ttcacaaaagtttgtttttacacatttccaccgttcacactgtgttcacatatttttactcaaaaag--caagtaaaaacttatattttcaggagaaagt 98  Q
    ||||||||||||||||||||||||||||||||||||||| | |||| | | | |||||||||||||   |||||||||||||||||||||| || ||| |    
18058611 ttcacaaaagtttgtttttacacatttccaccgttcaca-tatgttaagagacttttactcaaaaaaaacaagtaaaaacttatattttcaagataaaat 18058513  T
99 ttctattaatggattccttaaccaatgtcttta-ga---acactgattagcaagatccttttatatattgttattgtcaaaatcttagagacattgttat 194  Q
    ||||||||  ||||| ||||| |||| |||||| ||   ||| || ||| |||||||||||||||||||||||| |||||||  ||||||||||||||||    
18058512 ttctattagcggatttcttaatcaatatctttaagacagacattggttaacaagatccttttatatattgttatcgtcaaaactttagagacattgttat 18058413  T
195 aatactcatcttatttcaaaagttgtgcttttatggttggtgagtaatgatgggattaagtgcttccacacattttacaca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
18058412 aatactcatcttatttcaaaagttgtgcttttatggttggtgagtaatgatggcattaagtgcttccacacattttacaca 18058332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 8033318 - 8033243
Alignment:
74 aaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttagaacactgattagcaaga 149  Q
    ||||||| |||||||| || |||||||||||||||| | ||||||| || |||||||||| || ||||||||||||    
8033318 aaaacttgtattttcaagataaagtttctattaatgaaatccttaatcattgtctttagagcattgattagcaaga 8033243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 270
Target Start/End: Complemental strand, 18062113 - 18061999
Alignment:
153 ttttatatattgttattgtcaaaatcttagagacattgttataatactcatcttatttcaaaagttgtgcttttatggttggtgagtaatgatgggatta 252  Q
    ||||||||||||||||   ||||||||||||||||||||  ||| |||||||||| |||||||||  |||||| | ||| ||||   ||| |||| ||||    
18062113 ttttatatattgttatcaacaaaatcttagagacattgtactaaaactcatcttagttcaaaagtgttgctttcaaggtaggtg---aataatggaatta 18062017  T
253 agtgcttccacacatttt 270  Q
    | |||||||||| |||||    
18062016 aatgcttccacaaatttt 18061999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 8793874 - 8793951
Alignment:
72 taaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttagaacactgattagcaaga 149  Q
    ||||||||||||||| || || ||||||||||||| | |||||||||||||||| | ||||  ||||| |||||||||    
8793874 taaaaacttatatttccaagacaaagtttctattagtagattccttaaccaatgcccttagggcactggttagcaaga 8793951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 31915096 - 31915042
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaa 123  Q
    ||||||| |||| |||||||| || |||||||||||||||||| |||||||||||    
31915096 aagtaaagacttgtattttcaagacaaagtttctattaatggaatccttaaccaa 31915042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 19028476 - 19028419
Alignment:
68 caagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatg 125  Q
    |||||||||||||| ||||||| || ||| ||| || |||||||||||||||||||||    
19028476 caagtaaaaacttacattttcaagacaaaatttatactaatggattccttaaccaatg 19028419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 2839061 - 2839131
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttagaacactg 139  Q
    ||||||||| ||||||||||| || |||||||||| ||||||||||||||||||||||| ||||| |||||    
2839061 aagtaaaaatttatattttcaagacaaagtttctactaatggattccttaaccaatgtccttagagcactg 2839131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 23131493 - 23131437
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatg 125  Q
    ||||||||| ||||||||||| || |||||||||| |||||||||||||| ||||||    
23131493 aagtaaaaatttatattttcaagacaaagtttctactaatggattccttatccaatg 23131437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 12677904 - 12677974
Alignment:
91 gagaaagtttctattaatggattccttaaccaatgtctttagaacactgattagcaagatccttttatata 161  Q
    |||||| |||||| | ||||||| ||||||||||||| |||||||| || ||||||| | |||||| ||||    
12677904 gagaaaatttctacttatggatttcttaaccaatgtccttagaacaatggttagcaatacccttttttata 12677974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 31490414 - 31490464
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaa 119  Q
    ||||||||||||||||||||| ||  ||  |||||||||||||||||||||    
31490414 aagtaaaaacttatattttcaagatcaaaattctattaatggattccttaa 31490464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 33085339 - 33085395
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatg 125  Q
    ||||||||| ||||||||||| || |||||||||| |||||||||||||||||||||    
33085339 aagtaaaaatttatattttcaagacaaagtttctactaatggattccttaaccaatg 33085395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 35626650 - 35626730
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttagaacactgattagcaaga 149  Q
    |||||||||||||||||||||  | ||| ||||||||||||||||||||||||| |||| ||||  ||||  |||||||||    
35626650 aagtaaaaacttatattttcaaaacaaaatttctattaatggattccttaaccattgtccttagggcactagttagcaaga 35626730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 14157045 - 14156967
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttagaacactgattagcaa 147  Q
    ||||||||| || ||||| || || ||| |||||||||| |||||| |||| |||||||||||| |||||  |||||||    
14157045 aagtaaaaatttgtatttacaagataaaatttctattaaaggattcattaatcaatgtctttaggacacttgttagcaa 14156967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 42641177 - 42641255
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttagaacactgattagcaa 147  Q
    ||||||| |||| |||||||| || ||||||||||||||| || |||||||| | |||||||   |||||| |||||||    
42641177 aagtaaagacttgtattttcaagacaaagtttctattaatagaatccttaactattgtctttgtgacactggttagcaa 42641255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 23070270 - 23070184
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttagaacactgattagcaagatccttt 155  Q
    ||||||| |||| ||||| || || |||||||||||||||||| | |||||||| |||| ||||  ||||| |||||||||||||||    
23070270 aagtaaagacttgtatttccaagacaaagtttctattaatggaattcttaaccattgtccttagggcactggttagcaagatccttt 23070184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 8656357 - 8656443
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtcttt-agaacactgattagcaagatcctt 154  Q
    |||| ||||||||| |||| | || ||| |||||||| || | ||||||||||| ||||||| ||||||||| ||||||||| ||||    
8656357 aagttaaaacttatttttttaagacaaattttctatttatagtttccttaaccattgtctttgagaacactggttagcaagaccctt 8656443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 3432674 - 3432749
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttagaacactgattag 144  Q
    ||||||| ||||||||||||| || |||||||||||||||||| || ||||||| |||| |||  |||||| ||||    
3432674 aagtaaacacttatattttcaagataaagtttctattaatggaatcattaaccattgtccttaagacactgcttag 3432749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 19202231 - 19202183
Alignment:
74 aaaacttatattttcaggagaaagtttctattaatggattccttaacca 122  Q
    |||||||||||||||| || ||| | |||||| ||||||||||||||||    
19202231 aaaacttatattttcaagaaaaattatctatttatggattccttaacca 19202183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 41168678 - 41168600
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttagaacactgattagcaa 147  Q
    ||||||| |||| ||||| || || || |||| |||||||||| |||||||||| | |||||||||||||| |||||||    
41168678 aagtaaagacttgtatttccaagacaatgtttttattaatggaatccttaaccattatctttagaacactggttagcaa 41168600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 16346059 - 16345984
Alignment:
72 taaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttagaacactgattagcaa 147  Q
    |||||||||||||||||| || ||| ||| |||||| ||||| ||| ||||||| |||||| |||||  |||||||    
16346059 taaaaacttatattttcaagacaaaatttttattaaaggattacttgaccaatgcctttaggacacttgttagcaa 16345984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 41086872 - 41086803
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttagaacact 138  Q
    ||||||||| || ||||| || || ||||||||||  ||| ||||| |||||||||||| ||||||||||    
41086872 aagtaaaaatttgtatttccaagacaaagtttctacaaatagattctttaaccaatgtcattagaacact 41086803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 27982373 - 27982453
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttagaacactgattagcaaga 149  Q
    ||||||| |||| ||||| || || |||||||||||||||||| ||||||| || || | ||||  ||||| |||||||||    
27982373 aagtaaagacttgtatttccaagacaaagtttctattaatggaatccttaatcattgcccttagggcactggttagcaaga 27982453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 28039675 - 28039755
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttagaacactgattagcaaga 149  Q
    ||||||| |||| ||||| || || |||||||||||||||||| ||||||| || || | ||||  ||||| |||||||||    
28039675 aagtaaagacttgtatttccaagacaaagtttctattaatggaatccttaatcattgcccttagggcactggttagcaaga 28039755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 36162195 - 36162133
Alignment:
70 agtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttag 132  Q
    |||||||| |||||||| |  || ||||||||||||||||||||||||||| |||| ||||||    
36162195 agtaaaaatttatatttcctagacaaagtttctattaatggattccttaactaatgcctttag 36162133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 2392636 - 2392580
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatg 125  Q
    ||||||||||||  |||| || || |||||||||| |||||||||||||||||||||    
2392636 aagtaaaaacttgcatttacaagacaaagtttctactaatggattccttaaccaatg 2392580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 41260051 - 41260001
Alignment:
72 taaaaacttatattttcaggagaaagtttctattaatggattccttaacca 122  Q
    |||| |||| |||||||| || |||||||||||||||||| ||||||||||    
41260051 taaagacttgtattttcaagacaaagtttctattaatggaatccttaacca 41260001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 14124264 - 14124313
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattcctta 118  Q
    |||||||||||||||||| ||  | |||||||||||||||||| ||||||    
14124264 aagtaaaaacttatatttccaaaacaaagtttctattaatggaatcctta 14124313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 16502461 - 16502381
Alignment:
72 taaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttagaacactgattagcaagatcc 152  Q
    |||||| || ||||| || || |||||||||| |||||||||||||||||| || | ||||  ||||| ||||||| ||||    
16502461 taaaaatttgtatttccaagacaaagtttctactaatggattccttaaccattgcccttagggcactggttagcaaaatcc 16502381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 37645377 - 37645321
Alignment:
75 aaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtcttta 131  Q
    |||||| |||||||| || ||  ||| ||||||||||||||||||||||| ||||||    
37645377 aaacttgtattttcaagacaatatttatattaatggattccttaaccaatatcttta 37645321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 37858267 - 37858319
Alignment:
69 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaacc 121  Q
    |||||||||||| |||||||| || |||||||||||||||  | |||||||||    
37858267 aagtaaaaacttgtattttcaagataaagtttctattaatcaaatccttaacc 37858319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 45921385 - 45921337
Alignment:
74 aaaacttatattttcaggagaaagtttctattaatggattccttaacca 122  Q
    |||||||||||||||| || ||| |||||||| || |||||||||||||    
45921385 aaaacttatattttcaagacaaattttctatttatagattccttaacca 45921337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 38169117 - 38169171
Alignment:
71 gtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatg 125  Q
    |||| |||||||||||||| || |||| ||||||  |||||||||||||||||||    
38169117 gtaacaacttatattttcaagataaagcttctatatatggattccttaaccaatg 38169171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University