View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6887_high_6 (Length: 231)

Name: NF6887_high_6
Description: NF6887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6887_high_6
NF6887_high_6
[»] chr2 (2 HSPs)
chr2 (52-215)||(18058588-18058753)
chr2 (3-43)||(18779115-18779155)
[»] chr8 (1 HSPs)
chr8 (89-170)||(19924080-19924161)
[»] chr6 (1 HSPs)
chr6 (89-170)||(407005-407086)


Alignment Details
Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 52 - 215
Target Start/End: Complemental strand, 18058753 - 18058588
Alignment:
Q  52 aaaaagtcaattttcaaacttcatcgca--aaagccccataaattatatacacgccataactacacccagctgcacacctttggcagtaaaagaaccaaa 149  Q
    ||||||||||||||| |||| || || |  ||| |||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||    
T  18058753 aaaaagtcaattttctaactgcaccgtagaaaaaccccataaattatataccagccataactacaccgagctgcacacctttggcagtaaaagaaccaaa 18058654  T
Q  150 tctgagaactaaaaacacccatatactatgatgcatgacaatttcacaaaagtttgtttttacaca 215  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  18058653 tctgagaactaaaaacacccagatactatcatgcatgacaatttcacaaaagtttgtttttacaca 18058588  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 18779155 - 18779115
Alignment:
Q  3 acatgacatcggtagttatataattgactaaacaaaataac 43  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  18779155 acatgacatcggtagttatactattgactaaacaaaataac 18779115  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 19924161 - 19924080
Alignment:
Q  89 taaattatatacacgccataactacacccagctgcacacctttggcagtaaaagaaccaaatctgagaactaaaaacaccca 170  Q
    |||| |||||||  ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||    
T  19924161 taaactatataccagccataactacacgcagctgcacacctttggcaataaaagaaccaaatctgagcactaaaagcaccca 19924080  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 407005 - 407086
Alignment:
Q  89 taaattatatacacgccataactacacccagctgcacacctttggcagtaaaagaaccaaatctgagaactaaaaacaccca 170  Q
    ||||||||||||| |||||||||||||  ||||||||| |||||||| |||| |||||||||||||| |||| |||||||||    
T  407005 taaattatatacatgccataactacacgtagctgcacatctttggcaataaaggaaccaaatctgagcactacaaacaccca 407086  T

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