View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6887_low_4 (Length: 292)
Name: NF6887_low_4
Description: NF6887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6887_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 53532250 - 53532504
Alignment:
| Q |
18 |
gaaaaacttcagaaaagttctctgttcattgtagcagagtcttatggttgcaaattttggattatctgctcttaaactatcagatctcagattagtcgca |
117 |
Q |
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| T |
53532250 |
gaaaaacttcagaaaagttctctgttcattgtagcagagtcttatggttgcaaattttggattatctgctcttaaactatcagatctcagattagtcgca |
53532349 |
T |
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| Q |
118 |
ttcaattaatggttattgaaaacaattctgacttatgactgggaatagttaaattgttgttttcttgttaggaaatgatggatccttttgtattaaaata |
217 |
Q |
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| T |
53532350 |
ttcaattaatggttattgaaaacaattctgacttatgactgggaatagttaaattgttgttttcttgttaggaaatgatggatccttttgtattaaaata |
53532449 |
T |
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| Q |
218 |
tttttagaacataataacttcaagaaaatttatgattttgggaaactttttctta |
272 |
Q |
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| T |
53532450 |
tttttagaacataataacttcaagaaaatttatgattttgggaaactttttctta |
53532504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 20743158 - 20743070
Alignment:
| Q |
184 |
gttaggaaatgatggatccttttgtattaaaatatttttagaacataataacttcaagaaaatttatgattttgggaaactttttctta |
272 |
Q |
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| T |
20743158 |
gttaggaaatgatggacccttttgtattaaactatatttagaacataacaactgaaagaaaaagtatgattttgggaaactttttctta |
20743070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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