View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6888_high_4 (Length: 242)
Name: NF6888_high_4
Description: NF6888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6888_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 45497782 - 45497951
Alignment:
| Q |
8 |
caccaccaccgttctcctcttccgctcctcaccaccgcaccct-attctcaaccaccatcgtcctcaccgcaatcaattcgttcagatctgctctccctc |
106 |
Q |
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| T |
45497782 |
caccaccaccgttctcctcttccgctcctcactaccgcacccccatcctcaaccaccatcgtcctcaccgcaatcaatctgttcagatctgctctccctc |
45497881 |
T |
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| Q |
107 |
acgccaccgcctcacgcaatcaatccgttcagatctcttctccctcacatcgccgacaaaccgctcagat |
176 |
Q |
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| T |
45497882 |
acgccactgcctcacgcaatcaatctgttcagatctcttctcccttacatcgccggaaaaccgctcagat |
45497951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 26335497 - 26335395
Alignment:
| Q |
6 |
accaccaccaccgttctcctcttccgctcctcaccaccgcaccctattctcaaccaccatcgtcctcaccgcaatcaattcgttcagatctgctctccct |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26335497 |
accaccaccaccgttctcctcttccgctcctcaccaccgcaccccattttcaaccaccatcgtcctcaccgcaatcaattcgttcagatctcttctccct |
26335398 |
T |
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| Q |
106 |
cac |
108 |
Q |
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||| |
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| T |
26335397 |
cac |
26335395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 26335428 - 26335373
Alignment:
| Q |
121 |
cgcaatcaatccgttcagatctcttctccctcacatcgccgacaaaccgctcagat |
176 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
26335428 |
cgcaatcaattcgttcagatctcttctccctcacatcaccggcaaaccgctcagat |
26335373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 26335357 - 26335319
Alignment:
| Q |
195 |
gatgtcgaccttctctgcaacactgccttccgttcatct |
233 |
Q |
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| T |
26335357 |
gatgtcgaccttctctgcaacactgccttccgttcatct |
26335319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 45497967 - 45498005
Alignment:
| Q |
195 |
gatgtcgaccttctctgcaacactgccttccgttcatct |
233 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
45497967 |
gatgtagaccttctctgcaacactgccttccgttcatct |
45498005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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