View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6888_low_11 (Length: 246)
Name: NF6888_low_11
Description: NF6888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6888_low_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 41185619 - 41185854
Alignment:
| Q |
7 |
gagatggacatcagagaggtaaacaaagaaatatcatatattgaaatgaatggcatgaactgaaagttaattacaagaatcatnnnnnnnnnnnnnnnag |
106 |
Q |
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| T |
41185619 |
gagatgaaaatcagagaggtaaacaaagaaatctcatatattgaaatgaatggcatgaactgaaagttaattacaagaatcatacacacacaca----ag |
41185714 |
T |
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| Q |
107 |
ggaataaagctaggtgacttgtaacacaagtaatctgttataactaactttctatcatctattacttaaatgtaactggttataataaccggttgtcaac |
206 |
Q |
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| T |
41185715 |
tgaataaagctaggtgacttgtaacacaagtaatctgttataactaactttctatcatctatgacttaaatgtaactggttataataaccggttgtcaac |
41185814 |
T |
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| Q |
207 |
tggatggagtagtatcctctaacaagacgacttgtgcaat |
246 |
Q |
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| T |
41185815 |
tggatggagtagtatcctctaacaagatgacttgtgcaat |
41185854 |
T |
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