View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6888_low_12 (Length: 244)

Name: NF6888_low_12
Description: NF6888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6888_low_12
NF6888_low_12
[»] chr5 (7 HSPs)
chr5 (36-230)||(22042553-22042746)
chr5 (1-36)||(29186308-29186343)
chr5 (3-37)||(20398667-20398701)
chr5 (3-36)||(19223555-19223588)
chr5 (3-36)||(20372945-20372978)
chr5 (3-36)||(24956878-24956911)
chr5 (3-36)||(24965341-24965374)
[»] chr7 (6 HSPs)
chr7 (3-36)||(30244775-30244808)
chr7 (3-36)||(4941609-4941642)
chr7 (3-36)||(4952429-4952462)
chr7 (3-36)||(10439937-10439970)
chr7 (3-36)||(12978455-12978488)
chr7 (3-36)||(18304424-18304457)
[»] chr2 (12 HSPs)
chr2 (1-38)||(20372343-20372380)
chr2 (3-36)||(14582925-14582958)
chr2 (3-36)||(15944589-15944622)
chr2 (3-36)||(15953104-15953137)
chr2 (3-36)||(17687430-17687463)
chr2 (3-36)||(20621518-20621551)
chr2 (3-36)||(25483601-25483634)
chr2 (3-36)||(25491207-25491240)
chr2 (3-36)||(35138593-35138626)
chr2 (3-36)||(35146929-35146962)
chr2 (3-36)||(41233876-41233909)
chr2 (3-36)||(42249487-42249520)
[»] chr3 (9 HSPs)
chr3 (1-37)||(28470247-28470283)
chr3 (3-37)||(50824351-50824385)
chr3 (3-37)||(50851475-50851509)
chr3 (3-36)||(30508-30541)
chr3 (3-36)||(8197728-8197761)
chr3 (3-36)||(14538637-14538670)
chr3 (3-36)||(17628265-17628298)
chr3 (3-36)||(17919199-17919232)
chr3 (3-36)||(27341367-27341400)
[»] chr8 (7 HSPs)
chr8 (1-36)||(17664670-17664705)
chr8 (1-36)||(17683826-17683861)
chr8 (3-36)||(4582204-4582237)
chr8 (3-36)||(17973565-17973598)
chr8 (3-36)||(26873636-26873669)
chr8 (3-36)||(26876086-26876119)
chr8 (3-36)||(30938282-30938315)
[»] chr4 (8 HSPs)
chr4 (1-36)||(21532334-21532369)
chr4 (3-36)||(8094314-8094347)
chr4 (3-36)||(8103120-8103153)
chr4 (3-36)||(10638328-10638361)
chr4 (3-36)||(12428510-12428543)
chr4 (3-36)||(12996476-12996509)
chr4 (3-36)||(27343723-27343756)
chr4 (3-36)||(52295604-52295637)
[»] scaffold0048 (1 HSPs)
scaffold0048 (3-37)||(7661-7695)
[»] chr6 (8 HSPs)
chr6 (3-37)||(5004060-5004094)
chr6 (3-37)||(5489151-5489185)
chr6 (3-37)||(25550294-25550328)
chr6 (3-37)||(35091708-35091742)
chr6 (3-36)||(5994699-5994732)
chr6 (3-36)||(13490193-13490226)
chr6 (3-36)||(23925335-23925368)
chr6 (3-36)||(30824561-30824594)
[»] scaffold0991 (1 HSPs)
scaffold0991 (3-36)||(405-438)
[»] scaffold0497 (1 HSPs)
scaffold0497 (3-36)||(10993-11026)
[»] scaffold0431 (1 HSPs)
scaffold0431 (3-36)||(139-172)
[»] scaffold0156 (1 HSPs)
scaffold0156 (3-36)||(35388-35421)
[»] scaffold0111 (1 HSPs)
scaffold0111 (3-36)||(33035-33068)
[»] scaffold0083 (1 HSPs)
scaffold0083 (3-36)||(15813-15846)
[»] scaffold0039 (1 HSPs)
scaffold0039 (3-36)||(40865-40898)
[»] scaffold0016 (1 HSPs)
scaffold0016 (3-36)||(23464-23497)
[»] scaffold0015 (1 HSPs)
scaffold0015 (3-36)||(192528-192561)
[»] scaffold0002 (1 HSPs)
scaffold0002 (3-36)||(121228-121261)
[»] chr1 (4 HSPs)
chr1 (3-36)||(21498930-21498963)
chr1 (3-36)||(31539954-31539987)
chr1 (3-36)||(31548523-31548556)
chr1 (3-36)||(35104096-35104129)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 230
Target Start/End: Complemental strand, 22042746 - 22042553
Alignment:
Q  36 ataactacatcatctttaactactctttccacttgaaatggctggatatcgtgatgtgcttaaaagacaagttctgggaggttttgaaactgtacatctt 135  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |||||||||||| |||| ||||||||||||||||||||||||    
T  22042746 ataactacatcatctttaacaactctttccacttcaaatggctggatatcgtgttgtacttaaaagacaaattctaggaggttttgaaactgtacatctt 22042647  T
Q  136 ccatatcaggtattctatattttcagttttcctaactgctaattttattttgttttactactctgcagtgttgttatacttcttcaatgtgcaca 230  Q
    |||||||||||||||||||||||||| |||||||||||||  |    | ||||| |||||||||||| |||||||||||||||||||||||||||    
T  22042646 ccatatcaggtattctatattttcagctttcctaactgct-ctgcactgttgttatactactctgcactgttgttatacttcttcaatgtgcaca 22042553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 29186308 - 29186343
Alignment:
Q  1 ggatagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  29186308 ggatagagaaaagtggtcaaaatttggggtatgaca 29186343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 20398667 - 20398701
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgacat 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  20398667 atagagaaaagtggtcaaaatttggggtatgacat 20398701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 19223588 - 19223555
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  19223588 atagagaaaagtggtcaaaatttggggtatgaca 19223555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 20372945 - 20372978
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  20372945 atagagaaaagtggtcaaaatttggggtatgaca 20372978  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 24956878 - 24956911
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  24956878 atagagaaaagtggtcaaaatttggggtatgaca 24956911  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 24965341 - 24965374
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  24965341 atagagaaaagtggtcaaaatttggggtatgaca 24965374  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 30244808 - 30244775
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    ||||||||||||||||||||||||||||||||||    
T  30244808 atagagaaaagtggtcaaaatttgaggtatgaca 30244775  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 4941609 - 4941642
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  4941609 atagagaaaagtggtcaaaatttggggtatgaca 4941642  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 4952429 - 4952462
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    ||||| ||||||||||||||||||||||||||||    
T  4952429 atagataaaagtggtcaaaatttgaggtatgaca 4952462  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 10439970 - 10439937
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  10439970 atagagaaaagtggtcaaaatttggggtatgaca 10439937  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 12978488 - 12978455
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  12978488 atagagaaaagtggtcaaaatttggggtatgaca 12978455  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 18304424 - 18304457
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  18304424 atagagaaaagtggtcaaaatttggggtatgaca 18304457  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20372343 - 20372380
Alignment:
Q  1 ggatagagaaaagtggtcaaaatttgaggtatgacata 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  20372343 ggatagagaaaagtggtcaaaatttggggtatgacata 20372380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 14582958 - 14582925
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  14582958 atagagaaaagtggtcaaaatttggggtatgaca 14582925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 15944589 - 15944622
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  15944589 atagagaaaagtggtcaaaatttggggtatgaca 15944622  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 15953104 - 15953137
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  15953104 atagagaaaagtggtcaaaatttggggtatgaca 15953137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 17687430 - 17687463
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  17687430 atagagaaaagtggtcaaaatttggggtatgaca 17687463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 20621551 - 20621518
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  20621551 atagagaaaagtggtcaaaatttggggtatgaca 20621518  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 25483634 - 25483601
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  25483634 atagagaaaagtggtcaaaatttggggtatgaca 25483601  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 25491240 - 25491207
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  25491240 atagagaaaagtggtcaaaatttggggtatgaca 25491207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 35138626 - 35138593
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  35138626 atagagaaaagtggtcaaaatttggggtatgaca 35138593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 35146962 - 35146929
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  35146962 atagagaaaagtggtcaaaatttggggtatgaca 35146929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 41233876 - 41233909
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  41233876 atagagaaaagtggtcaaaatttggggtatgaca 41233909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 42249487 - 42249520
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  42249487 atagagaaaagtggtcaaaatttggggtatgaca 42249520  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28470247 - 28470283
Alignment:
Q  1 ggatagagaaaagtggtcaaaatttgaggtatgacat 37  Q
    |||||||||||||||||||||||||| ||||||||||    
T  28470247 ggatagagaaaagtggtcaaaatttggggtatgacat 28470283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 50824385 - 50824351
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgacat 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  50824385 atagagaaaagtggtcaaaatttggggtatgacat 50824351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 50851475 - 50851509
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgacat 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  50851475 atagagaaaagtggtcaaaatttggggtatgacat 50851509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 30508 - 30541
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  30508 atagagaaaagtggtcaaaatttggggtatgaca 30541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 8197728 - 8197761
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  8197728 atagagaaaagtggtcaaaatttggggtatgaca 8197761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 14538637 - 14538670
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  14538637 atagagaaaagtggtcaaaatttggggtatgaca 14538670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 17628298 - 17628265
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  17628298 atagagaaaagtggtcaaaatttggggtatgaca 17628265  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 17919232 - 17919199
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  17919232 atagagaaaagtggtcaaaatttggggtatgaca 17919199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 27341367 - 27341400
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  27341367 atagagaaaagtggtcaaaatttggggtatgaca 27341400  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 17664670 - 17664705
Alignment:
Q  1 ggatagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  17664670 ggatagagaaaagtggtcaaaatttggggtatgaca 17664705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 17683826 - 17683861
Alignment:
Q  1 ggatagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  17683826 ggatagagaaaagtggtcaaaatttggggtatgaca 17683861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 4582237 - 4582204
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    ||||||||||||||||||||||| ||||||||||    
T  4582237 atagagaaaagtggtcaaaatttaaggtatgaca 4582204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 17973598 - 17973565
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  17973598 atagagaaaagtggtcaaaatttggggtatgaca 17973565  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 26873636 - 26873669
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  26873636 atagagaaaagtggtcaaaatttggggtatgaca 26873669  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 26876086 - 26876119
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  26876086 atagagaaaagtggtcaaaatttggggtatgaca 26876119  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 30938315 - 30938282
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  30938315 atagagaaaagtggtcaaaatttggggtatgaca 30938282  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21532334 - 21532369
Alignment:
Q  1 ggatagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  21532334 ggatagagaaaagtggtcaaaatttggggtatgaca 21532369  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 8094314 - 8094347
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  8094314 atagagaaaagtggtcaaaatttggggtatgaca 8094347  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 8103120 - 8103153
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  8103120 atagagaaaagtggtcaaaatttggggtatgaca 8103153  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 10638361 - 10638328
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  10638361 atagagaaaagtggtcaaaatttggggtatgaca 10638328  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 12428510 - 12428543
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  12428510 atagagaaaagtggtcaaaatttggggtatgaca 12428543  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 12996509 - 12996476
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  12996509 atagagaaaagtggtcaaaatttggggtatgaca 12996476  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 27343723 - 27343756
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  27343723 atagagaaaagtggtcaaaatttggggtatgaca 27343756  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 52295637 - 52295604
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  52295637 atagagaaaagtggtcaaaatttggggtatgaca 52295604  T

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Target: scaffold0048 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 7661 - 7695
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgacat 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  7661 atagagaaaagtggtcaaaatttggggtatgacat 7695  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 5004094 - 5004060
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgacat 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  5004094 atagagaaaagtggtcaaaatttggggtatgacat 5004060  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 5489151 - 5489185
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgacat 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  5489151 atagagaaaagtggtcaaaatttggggtatgacat 5489185  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 25550328 - 25550294
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgacat 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  25550328 atagagaaaagtggtcaaaatttggggtatgacat 25550294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 35091708 - 35091742
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgacat 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  35091708 atagagaaaagtggtcaaaatttggggtatgacat 35091742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 5994732 - 5994699
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  5994732 atagagaaaagtggtcaaaatttggggtatgaca 5994699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 13490226 - 13490193
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  13490226 atagagaaaagtggtcaaaatttggggtatgaca 13490193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 23925368 - 23925335
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  23925368 atagagaaaagtggtcaaaatttggggtatgaca 23925335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 30824561 - 30824594
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  30824561 atagagaaaagtggtcaaaatttggggtatgaca 30824594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 405 - 438
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  405 atagagaaaagtggtcaaaatttggggtatgaca 438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 11026 - 10993
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  11026 atagagaaaagtggtcaaaatttggggtatgaca 10993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 172 - 139
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  172 atagagaaaagtggtcaaaatttggggtatgaca 139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 35388 - 35421
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  35388 atagagaaaagtggtcaaaatttggggtatgaca 35421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 33068 - 33035
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  33068 atagagaaaagtggtcaaaatttggggtatgaca 33035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 15846 - 15813
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  15846 atagagaaaagtggtcaaaatttggggtatgaca 15813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 40865 - 40898
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  40865 atagagaaaagtggtcaaaatttggggtatgaca 40898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 23497 - 23464
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  23497 atagagaaaagtggtcaaaatttggggtatgaca 23464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 192561 - 192528
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  192561 atagagaaaagtggtcaaaatttggggtatgaca 192528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 121261 - 121228
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  121261 atagagaaaagtggtcaaaatttggggtatgaca 121228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 21498930 - 21498963
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  21498930 atagagaaaagtggtcaaaatttggggtatgaca 21498963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 31539987 - 31539954
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  31539987 atagagaaaagtggtcaaaatttggggtatgaca 31539954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 31548556 - 31548523
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  31548556 atagagaaaagtggtcaaaatttggggtatgaca 31548523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 35104096 - 35104129
Alignment:
Q  3 atagagaaaagtggtcaaaatttgaggtatgaca 36  Q
    |||||||||||||||||||||||| |||||||||    
T  35104096 atagagaaaagtggtcaaaatttggggtatgaca 35104129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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