View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6888_low_15 (Length: 229)
Name: NF6888_low_15
Description: NF6888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6888_low_15 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 3139238 - 3139010
Alignment:
| Q |
1 |
tcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatccttat |
100 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
3139238 |
tcagaacgcacataaggcggaacgggcattagaaaagcaacgtcaacaaaggtatgatggtagtgctttaagttttgggcagccttactttaatccttat |
3139139 |
T |
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| Q |
101 |
cttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatccgagtcaatgattcaaaaaccaccttattttaaccctagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3139138 |
cttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatcagagtcaatgattcaaaaaccaccttattttaaccctagaa |
3139039 |
T |
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| Q |
201 |
ttactccacatagttttgggtatagtcat |
229 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
3139038 |
ttactccacatagttttgggtatagtcat |
3139010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 2022871 - 2023086
Alignment:
| Q |
2 |
cagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatccttatc |
101 |
Q |
| |
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||||| || |||||||| ||||| |||||||||| |||||| ||||||||||||| |||||||||| |||| ||||||||| ||||||| |||||| |
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| T |
2022871 |
cagaatgcccataaggctgaacgtacgttagaaaaacaacgtaaacaaaggtatgaaagtggtgcttttggtttagggcaacctcactttaacccttatt |
2022970 |
T |
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| Q |
102 |
ttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatccgagtcaatgattcaaaaaccaccttattttaaccctagaat |
201 |
Q |
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| T |
2022971 |
ttagttatccaagtactctttttacacgcccttattttagcgcaattgggactagaatggaatccatgattcaaaaaccactttttattaaccctagaat |
2023070 |
T |
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| Q |
202 |
tactccacatagtttt |
217 |
Q |
| |
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|||||||||||||||| |
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| T |
2023071 |
tactccacatagtttt |
2023086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 3167318 - 3167536
Alignment:
| Q |
1 |
tcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatccttat |
100 |
Q |
| |
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|||||| || |||||||| ||||| || |||||||| |||||| |||||| |||||| ||||| ||| |||| ||||||||||||||||| |||||| |
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| T |
3167318 |
tcagaatgcccataaggctgaacgtgccttagaaaaacaacgtaaacaaaagtatgaaaatggtgtttttggtttagggcaaccttactttaacccttat |
3167417 |
T |
|
| Q |
101 |
cttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatccgagtcaatgattcaaaaaccaccttattttaaccctagaa |
200 |
Q |
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|||||||||||| ||||||||||||||| | | ||||| | ||||| |||| || || ||||||||||| ||| ||||| |||||||||| | |
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| T |
3167418 |
tttagttatccaaatactctttttacaccctcttattataaggggcttggaactagaatggaatccatgattcaaaagccatcttatattaaccctagga |
3167517 |
T |
|
| Q |
201 |
ttactccacatagttttgg |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
3167518 |
ttactccacatagttttgg |
3167536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 3156951 - 3156749
Alignment:
| Q |
2 |
cagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatccttatc |
101 |
Q |
| |
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|||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| |||||| |||||| |||||| |||||||| ||||| |
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| T |
3156951 |
cagaacgctcataaggcggaacgtgctttagaaaagcaacggaaacaaaggtatgatgacagtgcttcaagtttggggcaatcttacttttatcct---- |
3156856 |
T |
|
| Q |
102 |
ttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatccgagtcaatgattcaaaaaccaccttattttaaccctagaat |
201 |
Q |
| |
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||||||||| |||||| |||||||||||| ||||| ||| ||||||||||||||||||||||||||||| ||| ||||| || |
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| T |
3156855 |
--------------actctttttcgaccttacgattataggtcactcggggtcagaaccgagtcaatgattcaaaaaccaccttatattagccctaagat |
3156770 |
T |
|
| Q |
202 |
tactccacatagttttgggta |
222 |
Q |
| |
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||| ||||| ||||||||||| |
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| T |
3156769 |
taccccacacagttttgggta |
3156749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 7491236 - 7491113
Alignment:
| Q |
11 |
cataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatccttatcttagttatc |
110 |
Q |
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|||||||||||||| ||||| ||||| |||||| || |||||||||||| |||||||||| |||| |||||| || ||||||| |||||| | | |||| |
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| T |
7491236 |
cataaggcggaacgtgcgttggaaaaacaacgtaaagaaaggtatgatgctggtgctttaggtttagggcaatctcactttaaaccttatttcaattatt |
7491137 |
T |
|
| Q |
111 |
caagtactctttttacaccttata |
134 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
7491136 |
ctagtactctttttacaccttata |
7491113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 9012074 - 9011903
Alignment:
| Q |
19 |
ggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaacct---tactttaatccttatcttagttatccaagt |
115 |
Q |
| |
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|||||| || || ||||||||| ||||||||||||||||| | ||||| |||| ||||||||| | ||||| |||||| ||||||||| ||| |
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| T |
9012074 |
ggaacgtgcatttgaaaagcaatgtcaacaaaggtatgatcaaaatcctttaggtttggggcaacctccttcttttaacccttattttagttatcgtagt |
9011975 |
T |
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| Q |
116 |
actctttttacaccttatagttataggtcacttggggttagatccgagtcaatgattcaaaaaccaccttat |
187 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||||| || |||||||||||||||||||||||| |
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|
| T |
9011974 |
actctttttacaccttataattataggctacccggggttagaatggaatcaatgattcaaaaaccaccttat |
9011903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 7498957 - 7498834
Alignment:
| Q |
11 |
cataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatccttatcttagttatc |
110 |
Q |
| |
|
|||||||| ||||| || || ||||| |||| || |||||||||||| |||||||||| |||| |||||| || ||||||| |||||| | | |||| |
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| T |
7498957 |
cataaggcagaacgtgcattggaaaaacaactaaaagaaaggtatgatgctggtgctttaggtttagggcaatctcactttaaaccttatttaaattatt |
7498858 |
T |
|
| Q |
111 |
caagtactctttttacaccttata |
134 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
7498857 |
ctagtactctttttacaccttata |
7498834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 23852205 - 23852407
Alignment:
| Q |
2 |
cagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatccttatc |
101 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||||| ||||||||||||||| ||||| |||| |||| |||||| |||||||||| || |
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| T |
23852205 |
cagaacgctcataaggcggaacgtactttagaaaagcaacggaaacaaaggtatgatgatggtgttttaggtttagggcaatcttactttaactct---- |
23852300 |
T |
|
| Q |
102 |
ttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatccgagtcaatgattcaaaaaccaccttattttaaccctagaat |
201 |
Q |
| |
|
||||||||| ||||||| |||||||||| | ||| ||||| |||||||||||||||||||||||| |||||||| ||||| || |
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| T |
23852301 |
--------------actctttttcgaccttatgattataggtcaatcgggattagaaccgagtcaatgattcaaaaaccacattattttagccctaagat |
23852386 |
T |
|
| Q |
202 |
tactccacatagttttgggta |
222 |
Q |
| |
|
||| ||||| ||||||||||| |
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| T |
23852387 |
taccccacacagttttgggta |
23852407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 1744522 - 1744651
Alignment:
| Q |
90 |
ttaatccttatcttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatccgagtcaatgattcaaaaaccaccttattt |
189 |
Q |
| |
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|||| |||||| |||||||||||| |||||||||||||| || |||| || |||| || |||||| || || ||||||||||||||| ||||| | |
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| T |
1744522 |
ttaacccttattttagttatccaaacactctttttacaccccctaattatggggcactcggtgttagaatggaatctatgattcaaaaaccatcttatat |
1744621 |
T |
|
| Q |
190 |
taaccctagaattactccacatagttttgg |
219 |
Q |
| |
|
|||||| | ||||| |||||| ||||||| |
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| T |
1744622 |
taaccccgggattaccccacatggttttgg |
1744651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 1763527 - 1763480
Alignment:
| Q |
11 |
cataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgat |
58 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||||||||||||| |
|
|
| T |
1763527 |
cataaggcggaacatgcattagaaaagcaacgtaaacaaaggtatgat |
1763480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 1760161 - 1760203
Alignment:
| Q |
12 |
ataaggcggaacgggcgttagaaaagcaacgtcaacaaaggta |
54 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||||||||| |
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| T |
1760161 |
ataaggcggaacgtgcattagaaaagcaacgtaaacaaaggta |
1760203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 1739256 - 1739308
Alignment:
| Q |
167 |
atgattcaaaaaccaccttattttaaccctagaattactccacatagttttgg |
219 |
Q |
| |
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||||||||||||||| ||||| |||||||||| ||| | |||||| ||||||| |
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| T |
1739256 |
atgattcaaaaaccatcttatattaaccctaggattgccccacatggttttgg |
1739308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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