View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6888_low_18 (Length: 223)
Name: NF6888_low_18
Description: NF6888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6888_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3138835 - 3138627
Alignment:
| Q |
1 |
gttgctacaatttcaaactcaaacatggaaaagcaaattattgtggcttctaattcaaccaatgatgatgatattcatgatcaatcaaagtccaacattg |
100 |
Q |
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| T |
3138835 |
gttgctacaatttcaaactcaaacatggaaaagcaaattattgtggctcctaattctaccaatgatgatgatattcatgatcaatcaaagtccaacattg |
3138736 |
T |
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| Q |
101 |
aagaagaaccttctgattctgaatcttccgatcttgatttatcacttaaactttaaataagttttatgtttaatttgtttccataagtcaatgtttttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3138735 |
aagaagaaccttctgattctgaatcttccgatcttgatttatcacttaagctttaaataagttttatgtttaatttgtttccataagtcaatgtttttgt |
3138636 |
T |
|
| Q |
201 |
tcatttgat |
209 |
Q |
| |
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||||||||| |
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| T |
3138635 |
tcatttgat |
3138627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 3156567 - 3156406
Alignment:
| Q |
1 |
gttgctacaatttcaaactcaaacatggaaaagcaaattattgtggcttctaattcaaccaatgatgatgatattcatgatcaatcaaagtccaacattg |
100 |
Q |
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|||||| ||| ||||||||||||||| ||||||||||||||||||||| ||| ||| ||||| |||||| |||||||||||||||||||| ||||||| |
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| T |
3156567 |
gttgctgcaagttcaaactcaaacatagaaaagcaaattattgtggctcctacttctaccaaagatgat---attcatgatcaatcaaagtctaacattg |
3156471 |
T |
|
| Q |
101 |
aagaagaaccttctgattctgaatcttccgatcttgatttatcacttaaactttaaataagtttt |
165 |
Q |
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|| |||||||||||||||||||||| || || |||||||||||||| || ||||||||||||||| |
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| T |
3156470 |
aaaaagaaccttctgattctgaatcatctgagcttgatttatcactcaagctttaaataagtttt |
3156406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 3167724 - 3167932
Alignment:
| Q |
1 |
gttgctacaatttcaaactcaaacatggaaaagcaaattattgtggcttctaattcaaccaatgatgatgatattcatgatcaatcaaagtccaa----- |
95 |
Q |
| |
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|||||||||| |||||||||||| | ||||| | || ||||||||| ||| ||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
3167724 |
gttgctacaagttcaaactcaaaggtagaaaaagatatcattgtggctcctatttcttccaataatgat---attcatgatcaatcaaagtccaagtcca |
3167820 |
T |
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| Q |
96 |
-cattgaagaagaaccttctgattctgaatcttccgatcttgatttatcacttaaactttaaataagttttatgtttaatttgtttccataagtcaatgt |
194 |
Q |
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|| |||||||||||| |||||||||||||||| || |||||||||||||| || |||||| ||| |||| | || ||||||||||||||||||||| |
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| T |
3167821 |
acaatgaagaagaaccctctgattctgaatcttttgagcttgatttatcactcaagctttaattaaatttt---tgtattttgtttccataagtcaatgt |
3167917 |
T |
|
| Q |
195 |
ttttgttcatttgat |
209 |
Q |
| |
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|
| T |
3167918 |
tcttgttaatttgat |
3167932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 2023297 - 2023397
Alignment:
| Q |
7 |
acaatttcaaactcaaacatggaaaagcaaattattgtggcttctaattcaaccaatgatgatgatattcatgatcaatcaaagtccaacattgaagaag |
106 |
Q |
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|||| ||||||||||||| | |||||| |||||||| ||||| | | |||||||||||| ||||||||||||||||||||| ||||||| |||||||| |
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| T |
2023297 |
acaagttcaaactcaaacctagaaaagaaaattattatggctcccacttcaaccaatga---tgatattcatgatcaatcaaaatccaacaatgaagaag |
2023393 |
T |
|
| Q |
107 |
aacc |
110 |
Q |
| |
|
|||| |
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|
| T |
2023394 |
aacc |
2023397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 23852593 - 23852794
Alignment:
| Q |
2 |
ttgctacaatttcaaactcaaacatggaaaagcaaattattgtggcttctaattcaaccaatgatgatgatattcatgatcaatcaaagtccaacattga |
101 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| | | | ||| |||| |||| | |||||||||| ||||||||| |||| ||| |
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| T |
23852593 |
ttgctacaagttcaaactcaaacatggaaaagcaaattattgtgcttcccacttctcccaaagatggt---attcatgatctatcaaagtctaacaatga |
23852689 |
T |
|
| Q |
102 |
agaagaaccttctgattctgaatcttccgatcttgatttatcacttaaactttaaataagttttatgtttaatttgtttccataagtcaatgtttttgtt |
201 |
Q |
| |
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|||||||||||| ||||||| ||| || || || ||||||||||| || ||||||| ||||||| || ||||||||| || ||||||||| ||||| |
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| T |
23852690 |
agaagaaccttccgattctggatcatctgagctagatttatcactcaagctttaaacaagtttt---catattttgtttccttatgtcaatgttattgtt |
23852786 |
T |
|
| Q |
202 |
catttgat |
209 |
Q |
| |
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||||||| |
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|
| T |
23852787 |
aatttgat |
23852794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 23856992 - 23857139
Alignment:
| Q |
15 |
aaactcaaacatggaaaagcaaattattgtggcttctaattcaaccaatgatgatgatattcatgatcaatcaaagtccaacattgaagaagaaccttct |
114 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| ||| || |||| | |||| ||||| ||||| ||| ||||| |||||||||||| ||||||| |
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| T |
23856992 |
aaactcaaacatagaaaagaaaattattgtggctcctacatctacca---aagatggtattcgtgatctatcgaagtctaacattgaagaaaaaccttcc |
23857088 |
T |
|
| Q |
115 |
gattctgaatcttccgatcttgatttatcacttaaactttaaataagtttt |
165 |
Q |
| |
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||||||| ||| || || |||||||||||||| | ||||||| ||||||| |
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| T |
23857089 |
gattctggatcatctgagcttgatttatcactctacctttaaacaagtttt |
23857139 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 1760815 - 1760893
Alignment:
| Q |
80 |
atcaatcaaagtccaacattgaagaagaaccttctgattctgaatcttccgatcttgatttatcacttaaactttaaat |
158 |
Q |
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|
|||||||||||| |||| ||||||||||| | || |||| ||||||| | ||||||||||||||||| |||||||| |
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| T |
1760815 |
atcaatcaaagttcaactttgaagaagaatcctccaattcggaatcttatgcgcttgatttatcacttaagctttaaat |
1760893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 7490777 - 7490713
Alignment:
| Q |
64 |
gatgatgatattcatgatcaatcaaagtccaacattgaagaagaaccttctgattctgaatcttc |
128 |
Q |
| |
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|||||||||| | || || | |||||||| ||||||||||||||||| || ||||| |||||||| |
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|
| T |
7490777 |
gatgatgatactgatcatgattcaaagtcaaacattgaagaagaaccctccgattcagaatcttc |
7490713 |
T |
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