View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6888_low_2 (Length: 447)

Name: NF6888_low_2
Description: NF6888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6888_low_2
NF6888_low_2
[»] chr2 (21 HSPs)
chr2 (193-311)||(24741621-24741738)
chr2 (358-433)||(24741513-24741588)
chr2 (80-162)||(24741771-24741853)
chr2 (1-70)||(21835876-21835945)
chr2 (80-128)||(14573261-14573309)
chr2 (79-128)||(21471016-21471065)
chr2 (80-128)||(21471954-21472002)
chr2 (79-130)||(5276464-5276515)
chr2 (80-135)||(33433153-33433208)
chr2 (78-128)||(37547996-37548046)
chr2 (78-128)||(38834636-38834686)
chr2 (79-128)||(4478850-4478899)
chr2 (79-128)||(19521917-19521966)
chr2 (79-128)||(24727820-24727869)
chr2 (80-128)||(4479702-4479750)
chr2 (80-128)||(13134318-13134366)
chr2 (81-128)||(16649705-16649752)
chr2 (79-128)||(2650228-2650277)
chr2 (79-120)||(14574007-14574048)
chr2 (80-128)||(37157522-37157570)
chr2 (80-128)||(37720038-37720086)
[»] chr3 (29 HSPs)
chr3 (187-297)||(32996801-32996912)
chr3 (355-436)||(32996678-32996759)
chr3 (80-157)||(32996936-32997014)
chr3 (79-128)||(36750437-36750486)
chr3 (79-128)||(37105077-37105126)
chr3 (80-128)||(45242987-45243035)
chr3 (80-128)||(49757182-49757230)
chr3 (81-128)||(42145278-42145325)
chr3 (78-128)||(14667295-14667344)
chr3 (79-128)||(43638078-43638127)
chr3 (187-255)||(5354405-5354473)
chr3 (80-128)||(19132812-19132860)
chr3 (80-128)||(32489946-32489994)
chr3 (80-128)||(38742174-38742222)
chr3 (80-128)||(46721958-46722006)
chr3 (80-127)||(21811879-21811926)
chr3 (80-127)||(31556217-31556264)
chr3 (81-128)||(38922744-38922791)
chr3 (79-126)||(41755498-41755545)
chr3 (80-126)||(17226968-17227014)
chr3 (80-130)||(17227946-17227996)
chr3 (82-128)||(32994927-32994973)
chr3 (78-128)||(44687163-44687213)
chr3 (79-128)||(25329382-25329431)
chr3 (79-128)||(32490195-32490244)
chr3 (91-128)||(37104363-37104400)
chr3 (80-128)||(19132563-19132611)
chr3 (80-128)||(30847853-30847901)
chr3 (80-128)||(38923665-38923713)
[»] chr8 (32 HSPs)
chr8 (187-270)||(25876629-25876712)
chr8 (79-156)||(7424534-7424611)
chr8 (79-156)||(25876520-25876597)
chr8 (187-270)||(7424421-7424504)
chr8 (79-128)||(34992264-34992313)
chr8 (79-130)||(61453-61504)
chr8 (80-130)||(1365829-1365879)
chr8 (79-128)||(41859309-41859358)
chr8 (80-128)||(27918047-27918095)
chr8 (78-128)||(30272956-30273006)
chr8 (80-130)||(39254787-39254837)
chr8 (79-128)||(5034897-5034946)
chr8 (80-128)||(36936418-36936466)
chr8 (80-128)||(36936697-36936745)
chr8 (80-128)||(42345166-42345214)
chr8 (81-128)||(28090658-28090705)
chr8 (79-130)||(39255750-39255801)
chr8 (79-130)||(44751607-44751658)
chr8 (80-130)||(216393-216443)
chr8 (80-130)||(692953-693003)
chr8 (80-130)||(697162-697212)
chr8 (80-130)||(730016-730066)
chr8 (80-130)||(853911-853961)
chr8 (80-129)||(62239-62288)
chr8 (87-128)||(4364046-4364087)
chr8 (87-128)||(37639718-37639759)
chr8 (79-128)||(42346560-42346609)
chr8 (80-128)||(5035276-5035324)
chr8 (80-128)||(7423486-7423534)
chr8 (80-128)||(32536708-32536756)
chr8 (77-105)||(41860119-41860147)
chr8 (80-128)||(44835429-44835477)
[»] chr4 (38 HSPs)
chr4 (77-156)||(42544485-42544564)
chr4 (188-270)||(42544596-42544678)
chr4 (76-128)||(52757809-52757861)
chr4 (80-163)||(23865282-23865365)
chr4 (85-128)||(3847891-3847934)
chr4 (79-130)||(47198604-47198655)
chr4 (78-128)||(11417685-11417735)
chr4 (78-128)||(29651332-29651382)
chr4 (79-128)||(26611283-26611332)
chr4 (85-128)||(3848578-3848621)
chr4 (78-128)||(10425059-10425109)
chr4 (78-128)||(48013315-48013365)
chr4 (79-128)||(28684232-28684281)
chr4 (79-128)||(30478308-30478357)
chr4 (79-128)||(31836460-31836509)
chr4 (79-128)||(47377598-47377647)
chr4 (80-128)||(10424123-10424171)
chr4 (80-128)||(11417937-11417985)
chr4 (80-128)||(21165447-21165495)
chr4 (80-128)||(25371545-25371593)
chr4 (80-128)||(36865717-36865765)
chr4 (80-128)||(37275088-37275136)
chr4 (80-128)||(38694954-38695002)
chr4 (80-128)||(39523271-39523319)
chr4 (80-128)||(42545563-42545611)
chr4 (80-128)||(45235960-45236008)
chr4 (79-127)||(46765169-46765217)
chr4 (86-130)||(55159186-55159230)
chr4 (79-130)||(55160065-55160115)
chr4 (78-128)||(21166375-21166425)
chr4 (79-129)||(47199394-47199444)
chr4 (87-128)||(25655639-25655680)
chr4 (79-127)||(11681275-11681323)
chr4 (79-127)||(11689554-11689602)
chr4 (79-127)||(12589286-12589334)
chr4 (84-128)||(38143737-38143781)
chr4 (80-128)||(45230365-45230413)
chr4 (80-128)||(46707394-46707442)
[»] chr6 (22 HSPs)
chr6 (358-433)||(24549639-24549714)
chr6 (80-128)||(3543063-3543111)
chr6 (82-128)||(3542816-3542862)
chr6 (79-128)||(7159341-7159390)
chr6 (79-128)||(7193337-7193386)
chr6 (80-128)||(33480628-33480676)
chr6 (82-128)||(33479698-33479744)
chr6 (79-128)||(14337557-14337606)
chr6 (80-157)||(33078285-33078362)
chr6 (80-128)||(7531829-7531877)
chr6 (80-128)||(15083318-15083366)
chr6 (80-128)||(22579935-22579983)
chr6 (84-128)||(22582479-22582523)
chr6 (84-128)||(22587310-22587354)
chr6 (77-128)||(7532440-7532491)
chr6 (78-128)||(7158433-7158483)
chr6 (80-130)||(9574569-9574619)
chr6 (85-127)||(10607406-10607448)
chr6 (187-248)||(24551481-24551541)
chr6 (87-128)||(33018416-33018457)
chr6 (80-128)||(24125972-24126020)
chr6 (80-128)||(33018167-33018215)
[»] chr7 (23 HSPs)
chr7 (76-128)||(37864307-37864359)
chr7 (79-128)||(37468909-37468958)
chr7 (79-128)||(38778853-38778902)
chr7 (79-128)||(41194512-41194561)
chr7 (80-128)||(668179-668227)
chr7 (80-128)||(17145622-17145670)
chr7 (80-128)||(37469005-37469053)
chr7 (80-128)||(38779563-38779611)
chr7 (78-128)||(4261596-4261646)
chr7 (82-128)||(7677809-7677855)
chr7 (80-128)||(669103-669151)
chr7 (77-128)||(38071895-38071946)
chr7 (78-128)||(29315311-29315361)
chr7 (78-128)||(41224843-41224893)
chr7 (87-128)||(20890206-20890247)
chr7 (79-128)||(29006346-29006395)
chr7 (78-127)||(47331954-47332003)
chr7 (87-127)||(24322429-24322469)
chr7 (80-128)||(38072291-38072339)
chr7 (80-128)||(41195366-41195414)
chr7 (80-128)||(44896046-44896094)
chr7 (79-127)||(44909360-44909408)
chr7 (79-127)||(45887981-45888029)
[»] chr1 (22 HSPs)
chr1 (80-128)||(49610706-49610754)
chr1 (78-128)||(1012545-1012595)
chr1 (79-128)||(51974436-51974485)
chr1 (79-128)||(51987826-51987875)
chr1 (80-128)||(16270207-16270255)
chr1 (80-128)||(23440865-23440913)
chr1 (78-130)||(35616773-35616825)
chr1 (80-128)||(43737729-43737777)
chr1 (78-128)||(45064684-45064734)
chr1 (79-128)||(43737978-43738027)
chr1 (79-128)||(48972445-48972494)
chr1 (80-128)||(193850-193898)
chr1 (80-128)||(194701-194749)
chr1 (80-128)||(8560839-8560887)
chr1 (80-128)||(9947995-9948043)
chr1 (80-128)||(9948887-9948935)
chr1 (86-130)||(48870751-48870795)
chr1 (80-128)||(51988464-51988512)
chr1 (80-130)||(37874064-37874114)
chr1 (82-128)||(38931247-38931293)
chr1 (78-127)||(8561737-8561786)
chr1 (80-128)||(50827091-50827138)
[»] chr5 (22 HSPs)
chr5 (86-128)||(4607470-4607512)
chr5 (79-128)||(8204119-8204168)
chr5 (79-128)||(12190158-12190207)
chr5 (80-128)||(15184017-15184065)
chr5 (79-130)||(13654932-13654983)
chr5 (80-127)||(39950404-39950451)
chr5 (78-128)||(33002816-33002866)
chr5 (79-128)||(8226641-8226690)
chr5 (79-128)||(36626630-36626679)
chr5 (80-128)||(686417-686464)
chr5 (80-128)||(16971033-16971081)
chr5 (80-128)||(26688166-26688214)
chr5 (80-128)||(26957897-26957945)
chr5 (80-128)||(31148445-31148493)
chr5 (78-128)||(8040444-8040494)
chr5 (79-128)||(2458354-2458403)
chr5 (79-128)||(13404703-13404752)
chr5 (79-128)||(33001931-33001980)
chr5 (85-126)||(39167442-39167483)
chr5 (80-128)||(7625473-7625521)
chr5 (80-128)||(14553667-14553715)
chr5 (79-127)||(33284024-33284072)
[»] scaffold0311 (1 HSPs)
scaffold0311 (79-128)||(160-209)
[»] scaffold0041 (2 HSPs)
scaffold0041 (80-128)||(27575-27623)
scaffold0041 (80-128)||(27221-27269)


Alignment Details
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 193 - 311
Target Start/End: Complemental strand, 24741738 - 24741621
Alignment:
Q  193 ttattattttaattttgtttccaagcttactactgcacctccccatttctccagtacagcacaaaactgattgattaaaacat-aaattatattattctt 291  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| |||||    
T  24741738 ttattattttaatgttgtttccaagcttactactgcacctccccatttcttcagtacaccacaaaactgattgattaaaacatgaaattatattcttctt 24741639  T
Q  292 cttctctcacgtacatcaaa 311  Q
    ||  ||||||||||||||||    
T  24741638 ct--tctcacgtacatcaaa 24741621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 358 - 433
Target Start/End: Complemental strand, 24741588 - 24741513
Alignment:
Q  358 aaaaagcttaacatcaactgttcttcttctcgcgtacaatactcagtttccaacaaagaacatcaactcttcttct 433  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24741588 aaaaggcttaacatcaattgtacttcttctcgcgtacaatactcagtttccaacaaagaacatcaactattcttct 24741513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 24741853 - 24741771
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtctctttaccaaggacacttgtcagttttggactg 162  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||| ||||||||||| ||||    
T  24741853 ggtgccgtttaatttgggaaagaagacttttttcccaccatggaaaaacctctttaccaaggacacctgtcagttttgaactg 24741771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 21835876 - 21835945
Alignment:
Q  1 tccttccgaaaatacatgaacatatcttgattaaacgacccctcctattatagaggaatcgttgtcaata 70  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| ||||||    
T  21835876 tcctttcgaaaatacatgaacatatcttgattcaaggacccctcctattatggaggaatcgttatcaata 21835945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 14573261 - 14573309
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 14573309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 21471016 - 21471065
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  21471016 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 21471065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 21472002 - 21471954
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||    
T  21472002 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 21471954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 5276464 - 5276515
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    ||||| ||||||| ||||||||| |||||| |||||||||||||||||||||    
T  5276464 aggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagtct 5276515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 33433208 - 33433153
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtctcttta 135  Q
    |||||| ||||||||| ||||| ||| || ||||||||||||||||||||||||||    
T  33433208 ggtgccgtttaatttgagaaaggagagttctttcccaccatgggaaagtctcttta 33433153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 37547996 - 37548046
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  37547996 aaggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagt 37548046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 38834686 - 38834636
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||| ||| |||||||| ||| |||||||||    
T  38834686 aaggtgccatttaatttgggaaaggagagttttttcctaccgtgggaaagt 38834636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 4478850 - 4478899
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| | |||| ||||||| |||||||||||    
T  4478850 aggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 4478899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 19521966 - 19521917
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| | |||| ||||||| |||||||||||    
T  19521966 aggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 19521917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 24727820 - 24727869
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| | |||||||||||| ||||| |||||    
T  24727820 aggtgccatttaatttgggaaagcacacttttttcccatcatggaaaagt 24727869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 4479750 - 4479702
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  4479750 ggtgccatttaatttgggaaaggagagttctttctcaccatgggaaagt 4479702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 13134318 - 13134366
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || ||||||||||| |||||||    
T  13134318 ggtgccatttaatttgggaaaggagagttctttcccaccataggaaagt 13134366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 16649705 - 16649752
Alignment:
Q  81 gtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||| | |||| ||||||| |||||||||||    
T  16649705 gtgccatttaatttgggaaagtaaacttctttcccatcatgggaaagt 16649752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 2650228 - 2650277
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||| ||||||||||||||  |||||||||||||| ||||| |||||    
T  2650228 aggtgccgtttaatttgggaaatgagacttttttcccatcatggaaaagt 2650277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 14574048 - 14574007
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccat 120  Q
    ||||||||||||||||||||||| ||| || |||||||||||    
T  14574048 aggtgccatttaatttgggaaaggagagttctttcccaccat 14574007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 37157522 - 37157570
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| | |||| ||||||| ||| |||||||    
T  37157522 ggtgccatttaatttgggaaagcaaacttctttcccatcataggaaagt 37157570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 37720038 - 37720086
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||| ||||||||||||||| | |||||||| ||| |||||||||||    
T  37720038 ggtgccgtttaatttgggaaagcaaactttttttccatcatgggaaagt 37720086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 187 - 297
Target Start/End: Complemental strand, 32996912 - 32996801
Alignment:
Q  187 ctcaatttattattttaattttgtttccaagcttactactgcacctccccatttctccagtacagcacaaaactgattgattaaaacat-aaattatatt 285  Q
    |||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  32996912 ctcagtttattattttaatgttatttccaagcttactactgcacctccccatttctccattacaccacaaaactgattgattaaaacatgaaattatatt 32996813  T
Q  286 attcttcttctc 297  Q
     |||||||||||    
T  32996812 cttcttcttctc 32996801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 355 - 436
Target Start/End: Complemental strand, 32996759 - 32996678
Alignment:
Q  355 cagaaaaagcttaacatcaactgttcttcttctcgcgtacaatactcagtttccaacaaagaacatcaactcttcttctctg 436  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32996759 cagaaaaagcttaacatcaactgttcttcttctcgcgtaaaatactcagtttccaacaaagaacatcaactcttcttctctg 32996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 32997014 - 32996936
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttc-ccaccatgggaaagtctctttaccaaggacacttgtcagttttg 157  Q
    |||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||| |||| ||||||    
T  32997014 ggtgccatttaatttgagaaagaagacttttttttccaccatgggaaagtctctttaccaaggacacgtgtcggttttg 32996936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 36750486 - 36750437
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  36750486 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 36750437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 37105126 - 37105077
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  37105126 aggtgccgtttaatttgggaaacgagacttttttcccaccatgggaaagt 37105077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 45243035 - 45242987
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||||| || ||| |||||||||||||||    
T  45243035 ggtgccatttaatttgggaaagaagagttcttttccaccatgggaaagt 45242987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 49757230 - 49757182
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||||    
T  49757230 ggtgccgtttaatttgggaaaggagacttttttcctaccatgggaaagt 49757182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 42145325 - 42145278
Alignment:
Q  81 gtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||| |||||||||| ||||||| |||||||    
T  42145325 gtgccatttaatttgggaaaggagactttttttccaccataggaaagt 42145278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 14667295 - 14667344
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  14667295 aaggtgccgtttaatttgggaaaggaga-ttttttcccaccatgggaaagt 14667344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 43638127 - 43638078
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| | |||| ||||||| |||||||||||    
T  43638127 aggtgccatttaatttgggaaagtaaacttctttcccatcatgggaaagt 43638078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 5354473 - 5354405
Alignment:
Q  187 ctcaatttattattttaattttgtttccaagcttactactgcacctccccatttctccagtacagcaca 255  Q
    ||||||||||||||||||| |||| |  |||||||||  |||||||||| |||||| ||||||| ||||    
T  5354473 ctcaatttattattttaatgttgtgtttaagcttactgttgcacctccctatttcttcagtacaccaca 5354405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 19132860 - 19132812
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| | | || |||||||||||||||||||    
T  19132860 ggtgccatttaatttgggaaaggaaagttctttcccaccatgggaaagt 19132812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 32489946 - 32489994
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || ||| |||||||||||||||    
T  32489946 ggtgccatttaatttgggaaaggagaattcttttccaccatgggaaagt 32489994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 38742222 - 38742174
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||| |||||||||||||||||||||| | |||| |||||    
T  38742222 ggtgccatttaatctgggaaagaagacttttttccctcaatggaaaagt 38742174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 46722006 - 46721958
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||| |||||||||||||||||||||||||||| || | ||||||||||    
T  46722006 ggtgtcatttaatttgggaaagaagactttttttcctctatgggaaagt 46721958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 21811879 - 21811926
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaag 127  Q
    |||||| ||||||||||||||  |||||||||||| ||||||||||||    
T  21811879 ggtgccgtttaatttgggaaatgagacttttttcctaccatgggaaag 21811926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 31556264 - 31556217
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaag 127  Q
    |||||||||||||||||||||| ||| || ||||||| ||||||||||    
T  31556264 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaag 31556217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 38922744 - 38922791
Alignment:
Q  81 gtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||| ||| || ||||| |||||||||||||    
T  38922744 gtgccatttaatttgggaaaggagagttatttcctaccatgggaaagt 38922791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 41755498 - 41755545
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaa 126  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||| ||||    
T  41755498 aggtgtcatttaatttgggaaaggagagttttttcccaccatgagaaa 41755545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 17226968 - 17227014
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaa 126  Q
    |||| ||||||||||||||||| ||| || |||||||||||||||||    
T  17226968 ggtggcatttaatttgggaaaggagatttctttcccaccatgggaaa 17227014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 17227996 - 17227946
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    |||| ||||||||||||||||| |||||| ||||||||||||  |||||||    
T  17227996 ggtggcatttaatttgggaaaggagacttctttcccaccatgaaaaagtct 17227946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 32994927 - 32994973
Alignment:
Q  82 tgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||| | | |||||||||| |||||||||||    
T  32994927 tgccatttaatttgggaaagcacatttttttcccatcatgggaaagt 32994973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 44687213 - 44687163
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||| ||| || ||| ||||||||| |||||    
T  44687213 aaggtgccatttaatttgggaaaggagaattcttttccaccatggaaaagt 44687163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 25329382 - 25329431
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||| |||||| | |||| ||||||| |||||||||||    
T  25329382 aggtgccatttaatttaggaaagcaaacttatttcccatcatgggaaagt 25329431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 32490244 - 32490195
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||| |||||||||||||||||| ||| || ||||||||||||| |||||    
T  32490244 aggtaccatttaatttgggaaaggagagttctttcccaccatggaaaagt 32490195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 37104363 - 37104400
Alignment:
Q  91 atttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  37104363 atttgggaaaggagactttttttccaccatgggaaagt 37104400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 19132563 - 19132611
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || ||||| || ||||||||||    
T  19132563 ggtgccatttaatttgggaaaggagagttctttcctactatgggaaagt 19132611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 30847901 - 30847853
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| | ||||  |||||| |||||||||||    
T  30847901 ggtgccatttaatttgggaaagcaaacttccttcccatcatgggaaagt 30847853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 38923713 - 38923665
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||  ||| || ||||||||||||| |||||    
T  38923713 ggtgccatttaatttgggaaatgagagttctttcccaccatggaaaagt 38923665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 25876629 - 25876712
Alignment:
Q  187 ctcaatttattattttaattttgtttccaagcttactactgcacctccccatttctccagtacagcacaaaactgattgattaa 270  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  25876629 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttccccattacaccacaaaactgattgattaa 25876712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 7424611 - 7424534
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtctctttaccaaggacacttgtcagtttt 156  Q
    |||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  7424611 aggtgcaatttaatttgagaaagaagactttttttccaccatgggaaagtctctttaccaaggacacttgtcggtttt 7424534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 25876520 - 25876597
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtctctttaccaaggacacttgtcagtttt 156  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| |||||    
T  25876520 aggtgccatttaatttgggaaagaagatttttttcccaccatgggaaagtctctttacgaaggatacttgtcggtttt 25876597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 7424504 - 7424421
Alignment:
Q  187 ctcaatttattattttaattttgtttccaagcttactactgcacctccccatttctccagtacagcacaaaactgattgattaa 270  Q
    ||||||||||||||||||| || ||||||| ||||||||||||||||||||||||  || |||| |||||||||||||||||||    
T  7424504 ctcaatttattattttaatgttctttccaaacttactactgcacctccccatttccgcattacaccacaaaactgattgattaa 7424421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 34992313 - 34992264
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  34992313 aggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 34992264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 61453 - 61504
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||||||||||    
T  61453 aggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtct 61504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 1365829 - 1365879
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    |||| ||||||||||||||||| |||||| |||||||||||||||||||||    
T  1365829 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtct 1365879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 41859309 - 41859358
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  41859309 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 41859358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 27918095 - 27918047
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  27918095 ggtgccgtttaatttgggaaatgagacttttttcccaccatgggaaagt 27918047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 30273006 - 30272956
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||| ||||||||||||||| | |||||||||||| |||||||||||    
T  30273006 aaggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 30272956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 39254787 - 39254837
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    |||| ||||||||||||||||| |||||| ||||||||||| |||||||||    
T  39254787 ggtggcatttaatttgggaaaggagacttctttcccaccataggaaagtct 39254837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 5034897 - 5034946
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| ||| || ||| |||||||||||||||    
T  5034897 aggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagt 5034946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 36936466 - 36936418
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||| ||||||||||||||| | |||||||||||| |||||||||||    
T  36936466 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 36936418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 36936745 - 36936697
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||| ||||||||||||||| | |||||||||||| |||||||||||    
T  36936745 ggtgccgtttaatttgggaaagcaaacttttttcccatcatgggaaagt 36936697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 42345166 - 42345214
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| | |||| ||||||| |||||||||||    
T  42345166 ggtgccatttaatttgggaaagtaaacttctttcccatcatgggaaagt 42345214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 28090658 - 28090705
Alignment:
Q  81 gtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||| | |||| ||||||| |||||||||||    
T  28090658 gtgccatttaatttgggaaagtaaacttctttcccatcatgggaaagt 28090705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 39255801 - 39255750
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    ||||| ||||||| ||||||||  |||||| |||||||||||||||||||||    
T  39255801 aggtggcatttaacttgggaaatgagacttctttcccaccatgggaaagtct 39255750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 44751607 - 44751658
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    ||||| ||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  44751607 aggtggcatttaacttgggaaaggagacttctttcccatcatgggaaagtct 44751658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 216393 - 216443
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    ||||||||||||| |||||||||| |||| |||||||| |||| |||||||    
T  216393 ggtgccatttaatctgggaaagaatacttctttcccactatggaaaagtct 216443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 692953 - 693003
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    ||||||||||||| |||||||||| |||| |||||||| |||| |||||||    
T  692953 ggtgccatttaatctgggaaagaatacttctttcccactatggaaaagtct 693003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 697162 - 697212
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    ||||||||||||| |||||||||| |||| |||||||| |||| |||||||    
T  697162 ggtgccatttaatctgggaaagaatacttctttcccactatggaaaagtct 697212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 730016 - 730066
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    ||||||||||||| |||||||||| |||| |||||||| |||| |||||||    
T  730016 ggtgccatttaatctgggaaagaatacttctttcccactatggaaaagtct 730066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 853911 - 853961
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    ||||||||||||| |||||||||| |||| |||||||| |||| |||||||    
T  853911 ggtgccatttaatctgggaaagaatacttctttcccactatggaaaagtct 853961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 62288 - 62239
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtc 129  Q
    |||| ||||||||||| ||||| |||||| ||||||||||| ||||||||    
T  62288 ggtgacatttaatttgagaaaggagacttctttcccaccataggaaagtc 62239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 4364046 - 4364087
Alignment:
Q  87 tttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||| | |||||||||||| |||||||||||    
T  4364046 tttaatttgggaaaggaaacttttttcccatcatgggaaagt 4364087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 37639718 - 37639759
Alignment:
Q  87 tttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||| ||| || |||||||||||||||||||    
T  37639718 tttaatttgggaaaggagagttctttcccaccatgggaaagt 37639759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 42346609 - 42346560
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| | |||| ||| ||| |||||||||||    
T  42346609 aggtgccatttaatttgggaaagcaaacttcttttccatcatgggaaagt 42346560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 5035324 - 5035276
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || ||| ||||||| |||||||    
T  5035324 ggtgccatttaatttgggaaaggagagttcttttccaccataggaaagt 5035276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 7423486 - 7423534
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||  | |||||||||| | |||||||||||    
T  7423486 ggtgccatttaatttgggaaaacacacttttttcctatcatgggaaagt 7423534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 32536708 - 32536756
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||| |||||  ||| || |||||||||||||||||||    
T  32536708 ggtgccatttaatttaggaaatgagagttctttcccaccatgggaaagt 32536756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 105
Target Start/End: Complemental strand, 41860147 - 41860119
Alignment:
Q  77 aaaggtgccatttaatttgggaaagaaga 105  Q
    |||||||||||||||||||||||||||||    
T  41860147 aaaggtgccatttaatttgggaaagaaga 41860119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 44835477 - 44835429
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||| |||| | |||| ||||||| |||||||||||    
T  44835477 ggtgccatttaatttggaaaagcaaacttctttcccatcatgggaaagt 44835429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 77 - 156
Target Start/End: Original strand, 42544485 - 42544564
Alignment:
Q  77 aaaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtctctttaccaaggacacttgtcagtttt 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||    
T  42544485 aaaggtgccatttaatttgggaaagaagacttttttcccaccatggaaaagtctctttatcaaggacacttgtcggtttt 42544564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 42544596 - 42544678
Alignment:
Q  188 tcaatttattattttaattttgtttccaagcttactactgcacctccccatttctccagtacagcacaaaactgattgattaa 270  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| || ||||||||||||||||    
T  42544596 tcaatttattattttaatgttgtttccaagcttactactgcacctccccatttccccattacaccataaaactgattgattaa 42544678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 52757809 - 52757861
Alignment:
Q  76 taaaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  52757809 taaaggtgccatttaatttgggaaagaagacttttttccctccataggaaagt 52757861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 23865365 - 23865282
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtctctttaccaaggacacttgtcagttttggactgg 163  Q
    |||||| ||||||||| ||||| |||||| ||||||||||||||| |||| ||||||| ||||||| | ||||||||| |||||    
T  23865365 ggtgccgtttaatttgtgaaaggagacttgtttcccaccatgggacagtccctttacccaggacacctatcagttttgaactgg 23865282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 3847891 - 3847934
Alignment:
Q  85 catttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  3847891 catttaatttgggaaaggagacttttttcccaccatgggaaagt 3847934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 47198604 - 47198655
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||||||||||    
T  47198604 aggtgacatttaatttgggaaaggagacttctttcccaccatgggaaagtct 47198655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 11417685 - 11417735
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  11417685 aaggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 11417735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 29651382 - 29651332
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  29651382 aaggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 29651332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 26611332 - 26611283
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||||||    
T  26611332 aggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaagt 26611283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 128
Target Start/End: Complemental strand, 3848621 - 3848578
Alignment:
Q  85 catttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  3848621 catttaatttgggaaaggagacttctttcccaccatgggaaagt 3848578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 10425109 - 10425059
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||| |||||| ||| || |||||||||||||||||||    
T  10425109 aaggtgccatttaatttaggaaaggagagttctttcccaccatgggaaagt 10425059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 48013315 - 48013365
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||| | |||| ||||||| |||||||||||    
T  48013315 aaggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 48013365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 28684281 - 28684232
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||| ||||||||||||||||| |||||||||||| ||||| |||||||    
T  28684281 aggtgacatttaatttgggaaaggagacttttttcctaccataggaaagt 28684232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 30478308 - 30478357
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| | |||| ||||||| |||||||||||    
T  30478308 aggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 30478357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 31836509 - 31836460
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||| ||||| ||| || |||||||||||||||||||    
T  31836509 aggtgccatttaatttgagaaaggagagttctttcccaccatgggaaagt 31836460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 47377647 - 47377598
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||  || || |||||||||||||||||||    
T  47377647 aggtgccatttaatttgggaaaggggagttgtttcccaccatgggaaagt 47377598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 10424123 - 10424171
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || ||||||||||| |||||||    
T  10424123 ggtgccatttaatttgggaaaggagagttctttcccaccataggaaagt 10424171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 11417985 - 11417937
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||| ||||||||||||||||| ||| || |||||||||||||||||||    
T  11417985 ggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagt 11417937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 21165447 - 21165495
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||| | || |||||||||||| ||||||    
T  21165447 ggtgccatttaatttgggaaagaatagttctttcccaccatgagaaagt 21165495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 25371593 - 25371545
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||| ||||||||||||||||| |||||| |||||||||||| ||||||    
T  25371593 ggtgacatttaatttgggaaaggagacttctttcccaccatgagaaagt 25371545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 36865765 - 36865717
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||| ||||||||||||||||| ||| || |||||||||||||||||||    
T  36865765 ggtgacatttaatttgggaaaggagagttctttcccaccatgggaaagt 36865717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 37275088 - 37275136
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||| ||||||||||||||| |||||| |||||||||||| ||||||    
T  37275088 ggtgccgtttaatttgggaaaggagacttctttcccaccatgagaaagt 37275136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 38695002 - 38694954
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || |||||||||||| ||||||    
T  38695002 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 38694954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 39523319 - 39523271
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || ||| |||||||||||||||    
T  39523319 ggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagt 39523271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 42545611 - 42545563
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| | |||||||||||| ||| |||||||    
T  42545611 ggtgccatttaatttgggaaagtacacttttttcccatcataggaaagt 42545563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 45236008 - 45235960
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||| |||| ||| || |||||||||||||||||||    
T  45236008 ggtgccatttaatttggaaaaggagagttctttcccaccatgggaaagt 45235960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 46765217 - 46765169
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaag 127  Q
    ||||| ||||||||||||||||||  | |||||||||||||||||||||    
T  46765217 aggtggcatttaatttgggaaagactagttttttcccaccatgggaaag 46765169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 55159186 - 55159230
Alignment:
Q  86 atttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    |||||||||||||||| |||||| ||||| |||||||||||||||    
T  55159186 atttaatttgggaaaggagacttctttcctaccatgggaaagtct 55159230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 55160115 - 55160065
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    ||||| ||||||||||||||||| |||| |||||| ||||||||||||||||    
T  55160115 aggtggcatttaatttgggaaaggagac-tttttctcaccatgggaaagtct 55160065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 21166425 - 21166375
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||| ||||| ||| || ||||||| |||||||||||    
T  21166425 aaggtgccatttaatttgagaaaggagagttctttcccatcatgggaaagt 21166375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 47199444 - 47199394
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtc 129  Q
    ||||| ||||||||||||||||  |||||| ||||||||||| ||||||||    
T  47199444 aggtggcatttaatttgggaaaagagacttctttcccaccataggaaagtc 47199394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 25655680 - 25655639
Alignment:
Q  87 tttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||  | ||||||||||||||||||||||    
T  25655680 tttaatttgggaaagactagttttttcccaccatgggaaagt 25655639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 11681323 - 11681275
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaag 127  Q
    ||||| |||||||||||| |||||  | |||||||||||||||||||||    
T  11681323 aggtggcatttaatttggaaaagactagttttttcccaccatgggaaag 11681275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 11689602 - 11689554
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaag 127  Q
    ||||| |||||||||||| |||||  | |||||||||||||||||||||    
T  11689602 aggtggcatttaatttggaaaagactagttttttcccaccatgggaaag 11689554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 12589286 - 12589334
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaag 127  Q
    ||||| ||||||||||||||||||  | ||||||||||| |||||||||    
T  12589286 aggtgacatttaatttgggaaagattagttttttcccactatgggaaag 12589334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 38143781 - 38143737
Alignment:
Q  84 ccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||  ||| || |||||||||||||||||||    
T  38143781 ccatttaatttgggaaatgagagttctttcccaccatgggaaagt 38143737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 45230365 - 45230413
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||| ||||||  ||| || |||||||||||||||||||    
T  45230365 ggtgccatttaattcgggaaaagagagttctttcccaccatgggaaagt 45230413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 46707394 - 46707442
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||| ||||| | |||||||||| | |||||||||||    
T  46707394 ggtgccatttaatttgagaaagtaaacttttttcctatcatgggaaagt 46707442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 358 - 433
Target Start/End: Complemental strand, 24549714 - 24549639
Alignment:
Q  358 aaaaagcttaacatcaactgttcttcttctcgcgtacaatactcagtttccaacaaagaacatcaactcttcttct 433  Q
    ||||||||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  24549714 aaaaagcttaacatcaactattcttcttctcgcgtaccctactcagtttcgaacaaagaacatcaactcttcttct 24549639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 3543111 - 3543063
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 3543063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 3542816 - 3542862
Alignment:
Q  82 tgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  3542816 tgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 3542862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 7159390 - 7159341
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| | |||||||||||| |||||||||||    
T  7159390 aggtgccatttaatttgggaaagcaaacttttttcccatcatgggaaagt 7159341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 7193337 - 7193386
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  7193337 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 7193386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 33480676 - 33480628
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||    
T  33480676 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 33480628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 33479698 - 33479744
Alignment:
Q  82 tgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||| ||| || |||||||||||||||||||    
T  33479698 tgccatttaatttgggaaaggagagttatttcccaccatgggaaagt 33479744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 14337606 - 14337557
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| | |||| ||||||| |||||||||||    
T  14337606 aggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 14337557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 33078362 - 33078285
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtctctttaccaaggacacttgtcagttttg 157  Q
    |||||| |||||||||| |||  ||||||||||   ||||||||| |||| ||||||| ||||||| |||||||||||    
T  33078362 ggtgccgtttaatttggaaaatgagactttttttttaccatgggacagtccctttacccaggacacctgtcagttttg 33078285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 7531829 - 7531877
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||| ||||||||||||||||| |||||| ||||| |||||||||||||    
T  7531829 ggtggcatttaatttgggaaaggagacttctttcctaccatgggaaagt 7531877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 15083366 - 15083318
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || |||||||||||| ||||||    
T  15083366 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 15083318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 22579935 - 22579983
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || ||| |||||||||||||||    
T  22579935 ggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagt 22579983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 22582523 - 22582479
Alignment:
Q  84 ccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||| ||| || |||||||||||||||||||    
T  22582523 ccatttaatttgggaaaggagagttctttcccaccatgggaaagt 22582479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 22587354 - 22587310
Alignment:
Q  84 ccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||| ||| || |||||||||||||||||||    
T  22587354 ccatttaatttgggaaaggagagttctttcccaccatgggaaagt 22587310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 7532491 - 7532440
Alignment:
Q  77 aaaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||| ||||||||||||||||| |||||| |||  ||||||||||||||    
T  7532491 aaaggtggcatttaatttgggaaaggagacttctttttcaccatgggaaagt 7532440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 7158433 - 7158483
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||| | ||||  |||||| |||||||||||    
T  7158433 aaggtgccatttaatttgggaaagcaaacttcattcccatcatgggaaagt 7158483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 9574619 - 9574569
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    |||| ||||||| ||||||||| |||||| ||||||||||| |||||||||    
T  9574619 ggtggcatttaacttgggaaaggagacttctttcccaccataggaaagtct 9574569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 10607406 - 10607448
Alignment:
Q  85 catttaatttgggaaagaagacttttttcccaccatgggaaag 127  Q
    ||||||||||||||||||  | |||||||||||||||||||||    
T  10607406 catttaatttgggaaagactagttttttcccaccatgggaaag 10607448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 24551541 - 24551481
Alignment:
Q  187 ctcaatttattattttaattttgtttccaagcttactactgcacctccccatttctccagta 248  Q
    ||||||||||||||||||| || |||| |||||||||| |||| |||| ||||||| |||||    
T  24551541 ctcaatttattattttaatgttttttc-aagcttactattgcatctcctcatttcttcagta 24551481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 33018457 - 33018416
Alignment:
Q  87 tttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||| ||| || |||||||||||||||||||    
T  33018457 tttaatttgggaaaggagagttctttcccaccatgggaaagt 33018416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 24125972 - 24126020
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||| |||||||||||||||||  || || |||||||||||||||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaagt 24126020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 33018167 - 33018215
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || ||||||| ||| |||||||    
T  33018167 ggtgccatttaatttgggaaaggagagttctttcccatcattggaaagt 33018215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 37864359 - 37864307
Alignment:
Q  76 taaaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||||| |||| || |||||||||||||||||||    
T  37864359 taaaggtgccatttaatttgggaaataagagttctttcccaccatgggaaagt 37864307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 37468909 - 37468958
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  37468909 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 37468958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 38778853 - 38778902
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  38778853 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 38778902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 41194512 - 41194561
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  41194512 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 41194561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 668179 - 668227
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||    
T  668179 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 668227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 17145622 - 17145670
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 17145670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 37469053 - 37469005
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 37469005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 38779611 - 38779563
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||    
T  38779611 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 38779563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 4261646 - 4261596
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||| |||||| ||| || |||||||||||||||||||    
T  4261646 aaggtgccatttaatttaggaaaggagagttctttcccaccatgggaaagt 4261596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 7677855 - 7677809
Alignment:
Q  82 tgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||| ||| || |||||||||||||||||||    
T  7677855 tgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 7677809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 669151 - 669103
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||  ||| |||||||||||||| |||||||    
T  669151 ggtgccatttaatttgggaaatgagagttttttcccaccataggaaagt 669103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 38071895 - 38071946
Alignment:
Q  77 aaaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||| |||||| ||| || ||||||| |||||||||||    
T  38071895 aaaggtgccatttaatttaggaaaggagagttctttcccatcatgggaaagt 38071946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 29315361 - 29315311
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||| |||||||||||||||||  | |||||||||| |||||||||||    
T  29315361 aaggtgcaatttaatttgggaaagactagttttttcccatcatgggaaagt 29315311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 41224893 - 41224843
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||||     ||||||||||||||||||||||    
T  41224893 aaggtgccatttaatttgggaaaggcttattttttcccaccatgggaaagt 41224843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 20890206 - 20890247
Alignment:
Q  87 tttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||| | | ||||||||||||||||||||||    
T  20890206 tttaatttgggaaaggacagttttttcccaccatgggaaagt 20890247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 29006346 - 29006395
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||     ||||||||||||||||||||||    
T  29006346 aggtgccatttaatttgggaaaggcttgttttttcccaccatgggaaagt 29006395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 47332003 - 47331954
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaag 127  Q
    |||||| |||||||||||||||||   | |||||||||||||||||||||    
T  47332003 aaggtgacatttaatttgggaaaggctagttttttcccaccatgggaaag 47331954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 24322429 - 24322469
Alignment:
Q  87 tttaatttgggaaagaagacttttttcccaccatgggaaag 127  Q
    ||||||||||||||| | |||||||||||| ||||||||||    
T  24322429 tttaatttgggaaaggaaacttttttcccatcatgggaaag 24322469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 38072339 - 38072291
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||  ||| || ||| |||||||||||||||    
T  38072339 ggtgccatttaatttgggaaatgagagttcttttccaccatgggaaagt 38072291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 41195414 - 41195366
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| | |||| ||||||| ||||| |||||    
T  41195414 ggtgccatttaatttgggaaagcaaacttctttcccatcatggaaaagt 41195366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 44896046 - 44896094
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||| ||||||||||||||||  | ||||| ||||||||||||||||    
T  44896046 ggtgccgtttaatttgggaaagactagtttttccccaccatgggaaagt 44896094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 44909408 - 44909360
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaag 127  Q
    ||||||| |||||||||||||||   | |||||||||||||||||||||    
T  44909408 aggtgccgtttaatttgggaaaggtaagttttttcccaccatgggaaag 44909360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 45888029 - 45887981
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaag 127  Q
    ||||| |||||||||||||||||   | |||||||||||||||||||||    
T  45888029 aggtggcatttaatttgggaaaggctagttttttcccaccatgggaaag 45887981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 49610706 - 49610754
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  49610706 ggtgccattttatttgggaaagaagacttttttccctccatgggaaagt 49610754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 1012545 - 1012595
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  1012545 aaggtgccgtttaatttgggaaaggagatttttttcccaccatgggaaagt 1012595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 51974436 - 51974485
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  51974436 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 51974485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 51987826 - 51987875
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||||||||    
T  51987826 aggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 51987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 16270207 - 16270255
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||    
T  16270207 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 16270255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 23440913 - 23440865
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||    
T  23440913 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 23440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 35616825 - 35616773
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    |||||| ||||||| ||||||||| |||||| |||||||||||||||||||||    
T  35616825 aaggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagtct 35616773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 43737729 - 43737777
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||    
T  43737729 ggtgccatttaatttgggaaagtagagttatttcccaccatgggaaagt 43737777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 45064684 - 45064734
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||||  | |||||||||| |||||||||||    
T  45064684 aaggtgccatttaatttgggaaagattagttttttcccatcatgggaaagt 45064734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 43738027 - 43737978
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  43738027 aggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagt 43737978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 48972494 - 48972445
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| ||| || ||||||||||||| |||||    
T  48972494 aggtgccatttaatttgggaaaggagagttctttcccaccatggaaaagt 48972445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 193850 - 193898
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || |||||||||||| ||||||    
T  193850 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 193898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 194749 - 194701
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| | |||| ||||||| |||||||||||    
T  194749 ggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 194701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 8560839 - 8560887
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||| ||||||||||||||||| |||||| ||||||| |||||||||||    
T  8560839 ggtgacatttaatttgggaaaggagacttctttcccatcatgggaaagt 8560887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 9947995 - 9948043
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||| | || ||||||||||||| |||||    
T  9947995 ggtgccatttaatttgggaaagaaaagttctttcccaccatggaaaagt 9948043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 9948935 - 9948887
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||| |||||| ||| || |||||||||||||||||||    
T  9948935 ggtgccatttaatttaggaaaggagagttctttcccaccatgggaaagt 9948887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 48870795 - 48870751
Alignment:
Q  86 atttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||    
T  48870795 atttaacttgggaaatgagacttttttcccaccatgggaaagtct 48870751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 51988512 - 51988464
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||| ||||||||||||||||| |||||| ||| |||||||||||||||    
T  51988512 ggtggcatttaatttgggaaaggagacttcttttccaccatgggaaagt 51988464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 37874064 - 37874114
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    |||| ||||||| ||||||||  |||||| |||||||||||||||||||||    
T  37874064 ggtgacatttaacttgggaaatgagacttctttcccaccatgggaaagtct 37874114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 38931293 - 38931247
Alignment:
Q  82 tgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||| || ||| | |||||||||||||    
T  38931293 tgccatttaatttgggaaagaagagttcttttctaccatgggaaagt 38931247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 8561786 - 8561737
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaag 127  Q
    |||||| ||||||||||||||||||  | |||||||||| ||||||||||    
T  8561786 aaggtgacatttaatttgggaaagactagttttttcccatcatgggaaag 8561737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 50827138 - 50827091
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||| ||||| ||| ||||| ||||||||||||||||    
T  50827138 ggtgccatttaatttgagaaaggagagttttt-cccaccatgggaaagt 50827091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 4607470 - 4607512
Alignment:
Q  86 atttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  4607470 atttaatttgggaaagtagacttttttcccaccatgggaaagt 4607512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 8204119 - 8204168
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  8204119 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 8204168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 12190207 - 12190158
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  12190207 aggtgccatttaatttgggaaaagagagttttttcccaccatgggaaagt 12190158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 15184065 - 15184017
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 15184017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 13654932 - 13654983
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagtct 130  Q
    ||||| ||||||||||||||||| |||||| ||||||||||| |||||||||    
T  13654932 aggtgacatttaatttgggaaaggagacttctttcccaccataggaaagtct 13654983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 39950404 - 39950451
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaag 127  Q
    |||||||||||||||||||||| ||| || ||||||||||||||||||    
T  39950404 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 39950451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 33002866 - 33002816
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||| ||||||||||||||||| ||| || |||||||||||||||||||    
T  33002866 aaggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagt 33002816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 8226641 - 8226690
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||| ||||||||| ||||||||| |||||| |||||    
T  8226641 aggtgccatttaatttgagaaagaagaattttttccctccatggaaaagt 8226690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 36626679 - 36626630
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||  ||| || |||||||||||||||||||    
T  36626679 aggtgccatttaatttgggaaatgagagttctttcccaccatgggaaagt 36626630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 686417 - 686464
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| |||  |||||||||||||||||||||    
T  686417 ggtgccatttaatttgggaaaggaga-gtttttcccaccatgggaaagt 686464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 16971081 - 16971033
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||  | |||||||||| |||||||||||    
T  16971081 ggtgccatttaatttgggaaagactagttttttcccatcatgggaaagt 16971033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 26688166 - 26688214
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| | |||| ||||||| |||||||||||    
T  26688166 ggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 26688214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 26957897 - 26957945
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| | |||| ||||||| |||||||||||    
T  26957897 ggtgccatttaatttgggaaagcaaacttctttcccatcatgggaaagt 26957945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 31148493 - 31148445
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||| ||||||||||||||| | |||||||||||| |||||||||||    
T  31148493 ggtgccgtttaatttgggaaagcacacttttttcccatcatgggaaagt 31148445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 8040494 - 8040444
Alignment:
Q  78 aaggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||||| | | || ||||||||| |||||||||    
T  8040494 aaggtgccatttaatttgggaaaggaaatttctttcccaccgtgggaaagt 8040444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 2458403 - 2458354
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||| ||||||||||||||  |||||||||| ||||||||| |||||    
T  2458403 aggtgccgtttaatttgggaaatgagactttttttccaccatggaaaagt 2458354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 13404752 - 13404703
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||| ||||||||||||||| | |  |||||||||||||||||||||||    
T  13404752 aggtggcatttaatttgggaacggactcttttttcccaccatgggaaagt 13404703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 33001931 - 33001980
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||| |||||||||||||||||| ||| || ||||||||||||| |||||    
T  33001931 aggtaccatttaatttgggaaaggagagttctttcccaccatggaaaagt 33001980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 39167483 - 39167442
Alignment:
Q  85 catttaatttgggaaagaagacttttttcccaccatgggaaa 126  Q
    ||||||||||||||||| |||||| ||||||| |||||||||    
T  39167483 catttaatttgggaaaggagacttctttcccatcatgggaaa 39167442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 7625473 - 7625521
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||| ||||||||||||||||| | |||| ||||||| |||||||||||    
T  7625473 ggtgtcatttaatttgggaaagcaaacttctttcccatcatgggaaagt 7625521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 14553667 - 14553715
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| | |||| ||| ||| |||||||||||    
T  14553667 ggtgccatttaatttgggaaagcaaacttcttttccatcatgggaaagt 14553715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 33284072 - 33284024
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaag 127  Q
    |||||||||||||||||||||||   | |||| ||||||||||||||||    
T  33284072 aggtgccatttaatttgggaaaggttagttttatcccaccatgggaaag 33284024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 209 - 160
Alignment:
Q  79 aggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||    
T  209 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 27623 - 27575
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||||||||    
T  27623 ggtgccatttaatttggaaaaggagagttttttcccaccatgggaaagt 27575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 27221 - 27269
Alignment:
Q  80 ggtgccatttaatttgggaaagaagacttttttcccaccatgggaaagt 128  Q
    |||||||||||||||||||||| ||| || ||||||| |||||||||||    
T  27221 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagt 27269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University