View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6888_low_3 (Length: 397)

Name: NF6888_low_3
Description: NF6888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6888_low_3
NF6888_low_3
[»] chr2 (2 HSPs)
chr2 (1-385)||(42401352-42401736)
chr2 (23-241)||(16324177-16324395)
[»] chr5 (2 HSPs)
chr5 (1-374)||(18092340-18092713)
chr5 (1-234)||(31468534-31468767)
[»] chr3 (4 HSPs)
chr3 (1-385)||(37152003-37152387)
chr3 (4-385)||(39463807-39464188)
chr3 (1-349)||(21788836-21789184)
chr3 (1-381)||(15462746-15463127)
[»] chr6 (2 HSPs)
chr6 (1-276)||(2960906-2961181)
chr6 (279-378)||(2960510-2960609)


Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 42401352 - 42401736
Alignment:
Q  1 tcctgtaatgagtttgatggagagaagggaatccgagtagcaaactaattcctctattcgcattgaaaccgccatgagtaagccttgatgaagagaagtg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  42401352 tcctgtaatgaggttgatggagagaagggaatccgagtagcaagctaattcctctattcccattgaaaccgccatgagtaagccttgatgaagagcagtg 42401451  T
Q  101 agttcagctagccggatgtctgtcgaatccggaaggaagccagagagaccagcgaggtaggctccaccattgtttcgaatgatacctccgaatcccgcac 200  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||     
T  42401452 agttcagctagcaggatgtctgtcgaatccggaatgaagccagagaaaccagcgaggtaggctccaccattgtttcgaaagatacctccgaaccccgcat 42401551  T
Q  201 ggattggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccatgcgatctggagggatgatattgtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42401552 ggattggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccatgcgatcgggagggatgatattgtt 42401651  T
Q  301 cctcttgaaacatgtctcaatgatgttgacagaatcgttgatacagtagctgatccgagttaaaggccaagtttcattgctgatg 385  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  42401652 cctcttgaaacatgtctcaatgatgttgacagaatcgttaatacggtagctgatccgagttaaaggccaagtttcattgctgatg 42401736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 16324395 - 16324177
Alignment:
Q  23 agaagggaatccgagtagcaaactaattcctctattcgcattgaaaccgccatgagtaagccttgatgaagagaagtgagttcagctagccggatgtctg 122  Q
    ||||| || |||||||||||| |||| || ||||||| ||||  | | ||||||| ||||||||||||||||| |||||||||||||| | |||||||||    
T  16324395 agaagcgagtccgagtagcaagctaactcttctattcccatttcagctgccatgattaagccttgatgaagagcagtgagttcagctaacaggatgtctg 16324296  T
Q  123 tcgaatccggaaggaagccagagagaccagcgaggtaggctccaccattgtttcgaatgatacctccgaatcccgcacggattggtgttccgaggcagct 222  Q
    |||| ||||  |  || || |||  |||||  |||||  | ||| | ||||||||||  |||||||||||||| || || ||||| |||||||| || ||    
T  16324295 tcgattccgagataaaaccggagtaaccagataggtaaccaccaacgttgtttcgaaaaatacctccgaatccagctcgaattggagttccgagacaact 16324196  T
Q  223 tccgtccacattgagaatg 241  Q
     ||||| ||||||||||||    
T  16324195 gccgtctacattgagaatg 16324177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 18092713 - 18092340
Alignment:
Q  1 tcctgtaatgagtttgatggagagaagggaatccgagtagcaaactaattcctctattcgcattgaaaccgccatgagtaagccttgatgaagagaagtg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  18092713 tcctgtaatgaggttgatggagagaagggaatccgagtagcaagctaattcctctattcccattgaaaccgccatgagtaagccttgatgaagagcagtg 18092614  T
Q  101 agttcagctagccggatgtctgtcgaatccggaaggaagccagagagaccagcgaggtaggctccaccattgtttcgaatgatacctccgaatcccgcac 200  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||| |||||| |||||||    
T  18092613 agttcagctagcaggatgtctgtcgaatccggaatgaagccagagaaaccagcgaggtaggctccaccattgtttggaaagatacatccgaaccccgcac 18092514  T
Q  201 ggattggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccatgcgatctggagggatgatattgtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18092513 ggattggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccatgcgatcgggagggatgatattgtt 18092414  T
Q  301 cctcttgaaacatgtctcaatgatgttgacagaatcgttgatacagtagctgatccgagttaaaggccaagttt 374  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  18092413 cctcttgaaacatgtctcaatgatgttgacagaatcgttaatacggtagctgatccgagttaaaggccaagttt 18092340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 31468767 - 31468534
Alignment:
Q  1 tcctgtaatgagtttgatggagagaagggaatccgagtagcaaactaattcctctattcgcattgaaaccgccatgagtaagccttgatgaagagaagtg 100  Q
    |||||||||||| |||||||| ||||| || |  |||||||||  ||| || ||||||| ||||| | | ||||||||||||||||||||||| | ||||    
T  31468767 tcctgtaatgagattgatggatagaagcgagtttgagtagcaagataactcttctattcccattgcagctgccatgagtaagccttgatgaagggcagtg 31468668  T
Q  101 agttcagctagccggatgtctgtcgaatccggaaggaagccagagagaccagcgaggtaggctccaccattgtttcgaatgatacctccgaatcccgcac 200  Q
    |||||||||| |   | ||| || || ||||| | ||| || |||  |||||  ||||| || ||| | ||||||||||  ||||||||||| || || |    
T  31468667 agttcagctaacaaaacgtccgttgattccgggatgaaaccggagtaaccagataggtaagcaccaacgttgtttcgaaatatacctccgaacccagccc 31468568  T
Q  201 ggattggtgttccgaggcagcttccgtccacatt 234  Q
    ||||||| |||||||| || || |||||||||||    
T  31468567 ggattggggttccgagacaactgccgtccacatt 31468534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 37152387 - 37152003
Alignment:
Q  1 tcctgtaatgagtttgatggagagaagggaatccgagtagcaaactaattcctctattcgcattgaaaccgccatgagtaagccttgatgaagagaagtg 100  Q
    |||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| ||||| | | |||||||| |||||||||||||| | ||||    
T  37152387 tcctgtaatgaggttgatggagagaagggagtccgagtagcaagctaattcctctattcccattgtagcagccatgagcaagccttgatgaagggcagtg 37152288  T
Q  101 agttcagctagccggatgtctgtcgaatccggaaggaagccagagagaccagcgaggtaggctccaccattgtttcgaatgatacctccgaatcccgcac 200  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||  |||||||| ||||||||| ||||||||||||||||||||||||| |||||||    
T  37152287 agttcagctagcaggatgtctgtcgaatccggaatgaagccagagaagccagcgagttaggctccaacattgtttcgaatgatacctccgaaccccgcac 37152188  T
Q  201 ggattggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccatgcgatctggagggatgatattgtt 300  Q
    |||||||||||||||| || || ||||||||||| |||||| ||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||| |    
T  37152187 ggattggtgttccgagacaactcccgtccacattaagaatgttacaaatattgttattttgattccattttaccatgcgatcgggagggatgatattgct 37152088  T
Q  301 cctcttgaaacatgtctcaatgatgttgacagaatcgttgatacagtagctgatccgagttaaaggccaagtttcattgctgatg 385  Q
    |||||||||||||||||  ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  37152087 cctcttgaaacatgtctggatgatgttgacagaatcgttgatgcggtagctgatccgagttaaaggccaagtttcattgctgatg 37152003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 385
Target Start/End: Complemental strand, 39464188 - 39463807
Alignment:
Q  4 tgtaatgagtttgatggagagaagggaatccgagtagcaaactaattcctctattcgcattgaaaccgccatgagtaagccttgatgaagagaagtgagt 103  Q
    ||||||||| ||||||||||||||||| |||||||||||| | |  |||||||||| ||||| | | ||||||||||||||||||||||| | | |||||    
T  39464188 tgtaatgagattgatggagagaagggagtccgagtagcaagccagctcctctattcccattgcagcagccatgagtaagccttgatgaagggcattgagt 39464089  T
Q  104 tcagctagccggatgtctgtcgaatccggaaggaagccagagagaccagcgaggtaggctccaccattgtttcgaatgatacctccgaatcccgcacgga 203  Q
    ||||||| | | ||||||||||| ||||||| |||||||||||  |||| ||||||||| ||| ||||||||| ||||||||||||||| || |||||||    
T  39464088 tcagctaacagaatgtctgtcgattccggaatgaagccagagaagccagagaggtaggcaccaacattgtttcaaatgatacctccgaacccagcacgga 39463989  T
Q  204 ttggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccatgcgatctggagggatgatattgttcct 303  Q
    ||||||||||||| || || ||||||||||| || |||  ||||| ||| ||||||||||||||||| ||||||||||| |||||||||| |||| ||||    
T  39463988 ttggtgttccgagacaactcccgtccacattaaggatgtgacaatgattgttattttgattccattttaccatgcgatcgggagggatgacattgctcct 39463889  T
Q  304 cttgaaacatgtctcaatgatgttgacagaatcgttgatacagtagctgatccgagttaaaggccaagtttcattgctgatg 385  Q
    |||||||| || ||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  39463888 cttgaaacttgactcgatgacgttgacagaatcgttgatacggtagctgatcctagttaaaggccaagtttcattgctgatg 39463807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 21789184 - 21788836
Alignment:
Q  1 tcctgtaatgagtttgatggagagaagggaatccgagtagcaaactaattcctctattcgcattgaaaccgccatgagtaagccttgatgaagagaagtg 100  Q
    ||||||||| || |||||||||||||| || |||||||||||| | || |||||||||| ||||| | | ||||||||||||||||||||||| | ||||    
T  21789184 tcctgtaataagattgatggagagaagcgagtccgagtagcaagccaactcctctattcccattgcagcagccatgagtaagccttgatgaagggcagtg 21789085  T
Q  101 agttcagctagccggatgtctgtcgaatccggaaggaagccagagagaccagcgaggtaggctccaccattgtttcgaatgatacctccgaatcccgcac 200  Q
    |||||||||| | | ||||||||||| ||||||| |||||||||||  |||| ||||||||| ||| ||||||||||||||||||||||||| || ||||    
T  21789084 agttcagctaacagaatgtctgtcgattccggaatgaagccagagaagccagagaggtaggcaccaacattgtttcgaatgatacctccgaacccagcac 21788985  T
Q  201 ggattggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccatgcgatctggagggatgatattgtt 300  Q
    ||||||| |||||||| || || ||||||||||| || |||  ||||| ||| ||||||||||||||||| ||||| ||||| |||||||||| |||| |    
T  21788984 ggattggagttccgagacaactcccgtccacattaaggatgtgacaatgattgttattttgattccattttaccatacgatcgggagggatgacattgct 21788885  T
Q  301 cctcttgaaacatgtctcaatgatgttgacagaatcgttgatacagtag 349  Q
    |||| |||||| || ||| |||| |||||||||||||||||||| ||||    
T  21788884 cctcatgaaacttgactcgatgacgttgacagaatcgttgatacggtag 21788836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 15462746 - 15463127
Alignment:
Q  1 tcctgtaatgagtttgatggagagaagggaatccgagtagcaaactaattcctctattcgcattgaaaccgccatgagtaagccttgatgaagagaagtg 100  Q
    ||||||||| || |||| ||||||||| || |||||||||||| | || |||||||||| ||||| |   ||||||||||||||||||||||| | ||||    
T  15462746 tcctgtaataagattgaaggagagaagcgagtccgagtagcaagccaactcctctattcccattgcagaagccatgagtaagccttgatgaagggcagtg 15462845  T
Q  101 agttcagctagccggatgtctgtcgaatccgg-aaggaagccagagagaccagcgaggtaggctccaccattgtttcgaatgatacctccgaatcccgca 199  Q
    |||||||||| | | ||||||||||| || || || ||||||||||| || || ||||||||| ||| ||||||||||||||||||||||||| || |||    
T  15462846 agttcagctaactgaatgtctgtcgattctggaaatgaagccagagaaacaagagaggtaggcaccaacattgtttcgaatgatacctccgaacccagca 15462945  T
Q  200 cggattggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccatgcgatctggagggatgatattgt 299  Q
    |||||||| |||||||| || ||  |||||||||| || |||  ||| | ||  ||||||||||||||| | ||||| | ||| |||||||||| |||      
T  15462946 cggattggagttccgagacaactctcgtccacattaaggatgtgacattgatggttattttgattccatattaccatacaatcgggagggatgacattac 15463045  T
Q  300 tcctcttgaaacatgtctcaatgatgttgacagaatcgttgatacagtagctgatccgagttaaaggccaagtttcattgct 381  Q
    ||  | |||||| |  |||  ||| |||||||||||| || |||| ||||||||||| ||||||||||||||||||||||||    
T  15463046 tctgcatgaaactttactcggtgacgttgacagaatcattaatacggtagctgatcctagttaaaggccaagtttcattgct 15463127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 2961181 - 2960906
Alignment:
Q  1 tcctgtaatgagtttgatggagagaagggaatccgagtagcaaactaattcctctattcgcattgaaaccgccatgagtaagccttgatgaagagaagtg 100  Q
    ||||||||| || |||||||||||||| || |||||||||||| | || |||||||||| ||||| | | ||||||||||||||||||||||| | ||||    
T  2961181 tcctgtaataagattgatggagagaagcgagtccgagtagcaagccaactcctctattcccattgcagcagccatgagtaagccttgatgaagggcagtg 2961082  T
Q  101 agttcagctagccggatgtctgtcgaatccggaaggaagccagagagaccagcgaggtaggctccaccattgtttcgaatgatacctccgaatcccgcac 200  Q
    |||||||||  | | ||||||||||| ||  ||| ||| |||||||  | || ||||||||| ||| ||||||||||||||||||||||||| || ||||    
T  2961081 agttcagctcacagaatgtctgtcgattctagaatgaaaccagagaacctagagaggtaggcaccaacattgtttcgaatgatacctccgaacccagcac 2960982  T
Q  201 ggattggtgttccgaggcagcttccgtccacattgagaatgctacaattattattattttgattccatttaaccat 276  Q
      ||||| |||||||| || || ||||||||||| || |||  ||||| ||  ||||||||||||||||| |||||    
T  2960981 atattggagttccgagacaactcccgtccacattaaggatgtgacaatgatggttattttgattccattttaccat 2960906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 378
Target Start/End: Complemental strand, 2960609 - 2960510
Alignment:
Q  279 gatctggagggatgatattgttcctcttgaaacatgtctcaatgatgttgacagaatcgttgatacagtagctgatccgagttaaaggccaagtttcatt 378  Q
    |||| |||||||||| |||  || || |||||| || ||||||||  |||||| |||| || |||| ||||||||||| |||||||||||||||||||||    
T  2960609 gatcgggagggatgacattactcttcatgaaacttgactcaatgacattgacataatcattaatacggtagctgatcctagttaaaggccaagtttcatt 2960510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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