View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6888_low_5 (Length: 358)
Name: NF6888_low_5
Description: NF6888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6888_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 24358812 - 24358479
Alignment:
| Q |
19 |
acttcctgagctctaacatcctttggccaatttattgatgaagttcttttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaacatcg |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| || | |
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| T |
24358812 |
actttctgagctctaacatcctttggccaatttattgatgaagttcttttagtagtcttctcatcatcacctgcatatatgcgtgcaatgtaaatcaaag |
24358713 |
T |
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| Q |
119 |
aagaaactcttgaagagcatcaatccattatgtattatatatatgcacactgaaaagaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
24358712 |
aagaaactcttgaagagcatcaatccattatgtattatatatgt--acactgaaaagaaaatcaagaaaccaaaccaaacctcgaacttttttatgtggt |
24358615 |
T |
|
| Q |
218 |
cgaggagaaacaaaaggtgatctttgtttagccttcttccgattaagccattcatccaaaatctcaactgatttatcatcatcactatgatcaacattgt |
317 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24358614 |
cgaggagaaacgaaaggtgatctttgtttagccttcttccaattaagccattcgtccaaaatctcaactgattcatcatcatcactatgatcaacattgt |
24358515 |
T |
|
| Q |
318 |
cattttcatcatcactgtcacatgaagaataatcta |
353 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
24358514 |
cattttcatcatcactgtcacatgaagaataatcta |
24358479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 169 - 344
Target Start/End: Complemental strand, 24370020 - 24369844
Alignment:
| Q |
169 |
tgaaaagaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacaaaaggtgatctttgtttagccttcttccgattaagcca |
267 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24370020 |
tgaaaagaaaatcaagaaaccaaaccaaaccttgaactttcttatgtggtcgagaagaaacaaaaggtgatctttgtctagccttcttccgattaagcca |
24369921 |
T |
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| Q |
268 |
ttcatccaaaatctcaactgatttatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaag |
344 |
Q |
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| T |
24369920 |
ttcatccaaaatctcaactgattcatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaag |
24369844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 167 - 347
Target Start/End: Original strand, 24364625 - 24364806
Alignment:
| Q |
167 |
actgaaaagaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacaaaaggtgatctttgtttagccttcttccgattaagc |
265 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
24364625 |
actgaaaagaaaatcaagaaaccaaaccaaacctcgaactttcttatgtggtcgagtagaaataaaaggtgatctttgtctagccttcttccgattaagc |
24364724 |
T |
|
| Q |
266 |
cattcatccaaaatctcaactgatttatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaagaat |
347 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |
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| T |
24364725 |
cattcatccaaaatctcaactgattcatcatcatcactatgatcaacattgtcattttcatcattagtgtcacttgaagaat |
24364806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 24370132 - 24370017
Alignment:
| Q |
17 |
caacttcctgagctctaacatcctttggccaatttattgatgaagttcttttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaacat |
116 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24370132 |
caacttcctgagctctaacatcctttggccaattcattgatgaagttcttttagtagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaacat |
24370033 |
T |
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| Q |
117 |
cgaagaaactcttgaa |
132 |
Q |
| |
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|||||||||||||||| |
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| T |
24370032 |
cgaagaaactcttgaa |
24370017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 196 - 311
Target Start/End: Complemental strand, 24354974 - 24354862
Alignment:
| Q |
196 |
acctcgaactttcttatgtggtcgaggagaaacaaaaggtgatctttgtttagccttcttccgattaagccattcatccaaaatctcaactgatttatca |
295 |
Q |
| |
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||||| |||||||||||| |||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||| |||||||||||||| || ||| |
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| T |
24354974 |
acctctaactttcttatgaggtcgaggagaaacgaaaggtgatctttgtctagcattcttctgattaagccattcttccaaaatctcaacaga---ctca |
24354878 |
T |
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| Q |
296 |
tcatcactatgatcaa |
311 |
Q |
| |
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|||||||||||||||| |
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| T |
24354877 |
tcatcactatgatcaa |
24354862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 24364449 - 24364541
Alignment:
| Q |
19 |
acttcctgagctctaacatcctttggccaatttattgatgaagttcttttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaa |
111 |
Q |
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||||||||||||||| ||| ||| ||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||||| |
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| T |
24364449 |
acttcctgagctctagcattcttcggccagtttattgatgaagttcttttagtagtcttctcatgatctcctgcatatatgtgtgcaatgtaa |
24364541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 264 - 344
Target Start/End: Complemental strand, 24344634 - 24344557
Alignment:
| Q |
264 |
gccattcatccaaaatctcaactgatttatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaag |
344 |
Q |
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| T |
24344634 |
gccattcatctaaaatctcaactgatt---catcatcactatgaccaacattgtcattttcatcatcagtgtcacatgaag |
24344557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 347
Target Start/End: Complemental strand, 24351880 - 24351741
Alignment:
| Q |
205 |
tttcttatgtggtcgaggagaaacaaaaggtgatctttgtttagccttcttccgattaagccattcatccaaaatctcaactgatttatcatcatcacta |
304 |
Q |
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||||||||||||||||||| ||| || |||| |||| | |||| ||||| |||| |||||||||| ||||||||| ||||| ||| |||| | |
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| T |
24351880 |
tttcttatgtggtcgaggataaaataatggtggcctttttctagcaatcttctgatttcgccattcatctgaaatctcaagtgattcatcgtcat---tt |
24351784 |
T |
|
| Q |
305 |
tgatcaacattgtcattttcatcatcactgtcacatgaagaat |
347 |
Q |
| |
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||| ||||||| |||||||||||||| ||||||||||||||| |
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| T |
24351783 |
tgaccaacatttccattttcatcatcagtgtcacatgaagaat |
24351741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 24362551 - 24362479
Alignment:
| Q |
43 |
ggccaatttattgatgaagttcttttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaaca |
115 |
Q |
| |
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|||||||| | ||||| |||||||| || |||||||| | ||||||||||||||||||||||| ||||||| |
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| T |
24362551 |
ggccaattcaatgatgtagttctttcagtagtcttcttaatctcacctgcatatatgtgtgaaatataaaaca |
24362479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 24355678 - 24355617
Alignment:
| Q |
54 |
tgatgaagttcttttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaaca |
115 |
Q |
| |
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||||||||||||||||| ||| |||| | ||||||||||||||||||| ||| ||||||| |
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| T |
24355678 |
tgatgaagttcttttagcagttttcttaatctcacctgcatatatgtgtggaatataaaaca |
24355617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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