View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6888_low_6 (Length: 301)
Name: NF6888_low_6
Description: NF6888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6888_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 31383219 - 31383487
Alignment:
| Q |
20 |
catacctctccacaacaacctctatcaaaacttcaaccaccaaagtcaaacaaaaacctcgctagttaggattggcaaccctaaaacgaatctacaacac |
119 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31383219 |
catacctctccacaacaacctcaatcaaaacttcaaccaccaaagtcaaacaaaaacctcgcaagttaggattggcaaccctaagacgaatctacaacac |
31383318 |
T |
|
| Q |
120 |
ttaggcatgacttcaattataacaataaaacaaggtatgaaggcggcaacaccaccc-atacctaaacaaatccaatcctctcgcacagaggagccaatt |
218 |
Q |
| |
|
||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31383319 |
ctagtcatgacttcagtta--------aaacaaggtatgaaggcggcaacaccaccccatacctaaacaaatccaatcctctcgcacagaggagccaatt |
31383410 |
T |
|
| Q |
219 |
ttgaaacatgcaggcacaatagatgtagcgacgaaaaaccatcaaccatttagaaaaactctatatccaacacgaaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31383411 |
ttgaaacatgcaggcacaatagatgtagcgacgaaaaaccatcaaccatttagaaaaactctatatccaacacgaaa |
31383487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University