View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6888_low_7 (Length: 289)
Name: NF6888_low_7
Description: NF6888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6888_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 18662086 - 18661808
Alignment:
| Q |
1 |
aacaaataaagcatacactcatacacactatatatacttacatagttacattacaattgcaacaacaataattaactaataaaatggcttacacaatttc |
100 |
Q |
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| T |
18662086 |
aacaaataaagcatacactcatacacactatatatacttacatagttacattgcaattgcaacaacaataattaactaataaaatggcttacacaatttc |
18661987 |
T |
|
| Q |
101 |
acatattttggtagtcatgttgctatttcccttccaatgttcctcctctgtatcatctttgataaaaggatcctctctctcagtagagaaacatacagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18661986 |
acatattttggtagtcatgttgctatttcccttccaatgttcctcctctgtatcatctttgataaaaggatcctctctctcagtagagaaacatacagaa |
18661887 |
T |
|
| Q |
201 |
gatgtaattgtctcttcaaagggtacattctctgctggcttctatcaaattggcgacaacgcattttcattcaccatat |
279 |
Q |
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| T |
18661886 |
gatgtaattgtctcttcaaagggtacattctctgctggcttctatcaaattggcgacaacgcattttcattcgccatat |
18661808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 247
Target Start/End: Complemental strand, 21132930 - 21132731
Alignment:
| Q |
48 |
acattacaattgcaacaacaataattaactaataaaatggcttacacaatttcacatattttggtagtcatgttgctatttcccttccaatgttcctcct |
147 |
Q |
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||||| ||||||||| ||||||||||||||||||| |||| || || ||||||||||||||| || || | || |||||||||||||||||||| || |
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| T |
21132930 |
acattgcaattgcaagaacaataattaactaataacatggttttcaaaatttcacatattttcctaatcttctttctatttcccttccaatgttcatctc |
21132831 |
T |
|
| Q |
148 |
ctgtatcatctttgataaaaggatcctctctctcagtagagaaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatca |
247 |
Q |
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| T |
21132830 |
atttatcatctttgaaaaaaggctcttctctctcagtagagaaacatgcagaagatgtaattgtttcttcaaagggaactttctctgctggattctatca |
21132731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 46 - 253
Target Start/End: Complemental strand, 21127607 - 21127400
Alignment:
| Q |
46 |
ttacattacaattgcaacaacaataattaactaataaaatggcttacacaatttcacatattttggtagtcatgttgctatttcccttccaatgttcctc |
145 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||||| |||| || || ||||||||||||||| || || | || ||||||||||| |||||||| || |
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| T |
21127607 |
ttacattgcaattgcaagaacaataattaactaataacatggttttcaaaatttcacatattttcctaatcttctttctatttccctttcaatgttcatc |
21127508 |
T |
|
| Q |
146 |
ctctgtatcatctttgataaaaggatcctctctctcagtagagaaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctat |
245 |
Q |
| |
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| |||||||||||| ||| || || ||||||||||||||||||||| |||||||||||| ||| ||||||||||| || ||||||||||| |||||| |
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| T |
21127507 |
tcatttatcatctttgaaaaagggctcttctctctcagtagagaaacatgcagaagatgtaactgtttcttcaaagggaactttctctgctggattctat |
21127408 |
T |
|
| Q |
246 |
caaattgg |
253 |
Q |
| |
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||| |||| |
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|
| T |
21127407 |
caagttgg |
21127400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 92 - 279
Target Start/End: Complemental strand, 21120180 - 21119990
Alignment:
| Q |
92 |
cacaatttcacatattttggtagtcatgttgctatttcccttccaat---gttcctcctctgtatcatctttgataaaaggatcctctctctcagtagag |
188 |
Q |
| |
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|||||| ||| ||||||| ||||| ||||||||||||||||||||| |||| || |||||||||||||||| || ||||| |||||||| |||||| |
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| T |
21120180 |
cacaatatcatatatttttttagtcttgttgctatttcccttccaatattgttcatcttctgtatcatctttgaacaagggatcttctctctctgtagag |
21120081 |
T |
|
| Q |
189 |
aaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatcaaattggcgacaacgcattttcattcaccatat |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || ||||||||||| || ||||||||||| || || || ||||| ||| |||||| |
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| T |
21120080 |
aaacatacagaagatgtaattgtctcttcaaatggcactttctctgctggtttttatcaaattggtgaaaatgctttttccttcgccatat |
21119990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 253
Target Start/End: Original strand, 39120049 - 39120254
Alignment:
| Q |
46 |
ttacattacaattgcaacaacaat-aattaactaataaaatggcttacacaatttcacatattttggtagtcatgttgctatttcccttccaatgttcct |
144 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| | |||||| |||||||||| || |||| ||| | ||| ||||||||||||||||||| | |
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| T |
39120049 |
ttacattgcaattgcaacaacaaacaattaactaaca---tggctttcacaatttcatattttttcctagcctacttgttatttcccttccaatgttcat |
39120145 |
T |
|
| Q |
145 |
cctctgtatcatctttgataaaaggatcctctctctcagtagagaaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttcta |
244 |
Q |
| |
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| || ||||||| |||| ||||| |||||||| ||||||||||| || | |||||||||||||| |||||||| || | ||||| |||||||||| |
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| T |
39120146 |
cttcattatcatcattgaacaaagggtcctctctttcagtagagaagtatgctgaagatgtaattgtttcttcaaatggaatgttctcagctggcttctt |
39120245 |
T |
|
| Q |
245 |
tcaaattgg |
253 |
Q |
| |
|
|||| |||| |
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|
| T |
39120246 |
tcaagttgg |
39120254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 253
Target Start/End: Original strand, 39129782 - 39129987
Alignment:
| Q |
46 |
ttacattacaattgcaacaacaat-aattaactaataaaatggcttacacaatttcacatattttggtagtcatgttgctatttcccttccaatgttcct |
144 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| | |||||| |||||||||| || |||| ||| | ||| ||||||||||||||||||| | |
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| T |
39129782 |
ttacattgcaattgcaacaacaaacaattaactaaca---tggctttcacaatttcatattttttcctagcctacttgttatttcccttccaatgttcat |
39129878 |
T |
|
| Q |
145 |
cctctgtatcatctttgataaaaggatcctctctctcagtagagaaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttcta |
244 |
Q |
| |
|
| || ||||||| |||| ||||| |||||||| ||||||||||| || | |||||||||||||| |||||||| || | ||||| |||||||||| |
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| T |
39129879 |
cttcattatcatcattgaacaaagggtcctctctttcagtagagaagtatgctgaagatgtaattgtttcttcaaatggaatgttctcagctggcttctt |
39129978 |
T |
|
| Q |
245 |
tcaaattgg |
253 |
Q |
| |
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|||| |||| |
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|
| T |
39129979 |
tcaagttgg |
39129987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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