View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6888_low_9 (Length: 277)
Name: NF6888_low_9
Description: NF6888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6888_low_9 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 62 - 268
Target Start/End: Original strand, 18343893 - 18344099
Alignment:
| Q |
62 |
attatcatattggcaaaaatttctaaattcnnnnnnntccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggtta |
161 |
Q |
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| T |
18343893 |
attatcatattggcaaaaatttctaaattcaaaaaaatccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggtta |
18343992 |
T |
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| Q |
162 |
gtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatctaacgaatcagtaagattatgaaatttaatataatcttaggtattca |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18343993 |
gtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatctaatgaatcagtaagattatgaaatttaatataatcttaggtattca |
18344092 |
T |
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| Q |
262 |
caggttc |
268 |
Q |
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||||||| |
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| T |
18344093 |
caggttc |
18344099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 36639000 - 36638870
Alignment:
| Q |
99 |
tccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttc |
198 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36639000 |
tccacattttcgcgggcgaatattcactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttc |
36638901 |
T |
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| Q |
199 |
cgtccgccatcccatctaacgaatcagtaag |
229 |
Q |
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| T |
36638900 |
cgtccgccatcccatctaatgaattagtaag |
36638870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 99 - 268
Target Start/End: Complemental strand, 163407 - 163237
Alignment:
| Q |
99 |
tccacattttcgcgggcgaatattt-actctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagtt |
197 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
163407 |
tccacattttcgcgggcgaatattttactctttcattataaatttaagatgtgatgttggattagtccacaactcctcaaaaaataatgaattcttagtt |
163308 |
T |
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| Q |
198 |
ccgtccgccatcccatctaacgaatcagtaagattatgaaatttaatataatcttaggtattcacaggttc |
268 |
Q |
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| T |
163307 |
ccgtccaccatcccatctaatgaatcagtaagattatgaaatttaatataatcttaagtattcacaagttc |
163237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 65 - 259
Target Start/End: Complemental strand, 9857838 - 9857643
Alignment:
| Q |
65 |
atcatattggcaaaaatttctaaattcnnnnnnntccacattttcgcgggcgaatattt-actctttcattataaatttaagatgtaatgttgggttagt |
163 |
Q |
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||||||||||||||||||| ||||||| ||||||||||| | | |||||||| ||||||||||||||||||||||||||||||| | |||| |
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| T |
9857838 |
atcatattggcaaaaatttataaattcaaaaaaatccacattttcacatgtgaatattttactctttcattataaatttaagatgtaatgtcagattagc |
9857739 |
T |
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| Q |
164 |
ccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatctaacgaatcagtaagattatgaaatttaatataatcttaggtatt |
259 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||| ||||||||| |||||||||||||| | ||||||| |
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| T |
9857738 |
ccacaactcctcaaaaaataatgaattcttagttttgtccaccatccaatctaatgaatcaataagattattaaatttaatataatttgaggtatt |
9857643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 31878258 - 31878210
Alignment:
| Q |
99 |
tccacattttcgcgggcgaatatttactctttcattataaatttaagat |
147 |
Q |
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|||||||||| ||| |||||| ||||||||| |||||||||||||||| |
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| T |
31878258 |
tccacatttttgcgaccgaataattactctttaattataaatttaagat |
31878210 |
T |
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