View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6889_high_1 (Length: 221)
Name: NF6889_high_1
Description: NF6889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6889_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 44996161 - 44995969
Alignment:
| Q |
19 |
cttggtaccgttggtcctgtatctatatacaacgaaatacaactagaagaagttccagagatgggttacaatcctcttggaaatccttcatgtggtgaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44996161 |
cttggtaccgttggtcctgtatctatatacaacgaaatacaactagaagaagttccagagatgggttacaatcctcttggaaatccttcatgtggtgaga |
44996062 |
T |
|
| Q |
119 |
tatgtcttagagggaaatcagttttctctggctaccacaaaaaccctgagttaacaaaggaatccatagtagatggatggtttcacacaggtt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44996061 |
tatgtcttagagggaaatcagttttctctggctaccacaaaaaccctgagttaacaaaggaatccatagtagatggatggtttcacacaggtt |
44995969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 38768135 - 38768279
Alignment:
| Q |
67 |
gaagttccagagatgggttacaatcctcttggaaatccttcatgtggtgagatatgtcttagagggaaatcagttttctctggctaccacaaaaaccctg |
166 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| ||||||| ||||||||| | ||||| ||| |||||| |||| ||||| || || |||| |
|
|
| T |
38768135 |
gaagttccagacatgggttacaatcctcttggaactccgccatgtggagagatatgtgtcagaggcaaaagtgttttcactggttaccataagaatcctg |
38768234 |
T |
|
| Q |
167 |
agttaacaaaggaatccatagtagatggatggtttcacacaggtt |
211 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||||||||| |
|
|
| T |
38768235 |
agttaacaaaagaagccataatagatggatggtttcacacaggtt |
38768279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University