View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6890_high_12 (Length: 339)
Name: NF6890_high_12
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6890_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 28014077 - 28014397
Alignment:
| Q |
1 |
ttgctctccttgatgttatcagtatcatttatcttagacaattactcgatctggtgtggcaggaaaaaattctacgatatccggagactggttattaacc |
100 |
Q |
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| T |
28014077 |
ttgctctccttgatgttatcggtatcatttatcttagacaattactcgatctggtgtggcaggaaaaaattccacgatatccggagactggttattaacc |
28014176 |
T |
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| Q |
101 |
agactgtcacacctaatcaagctgttttgcattgaaaaatttctcctggcatgagtaaaagtgacaaattgtatgttgtagatcgttgcaattgcaaata |
200 |
Q |
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| T |
28014177 |
agactgtcacacctaatcaagctgttttgcattgaaaaatttctcctggcataagtaaaagtgacaaattgtgtgttgtagatcgttgcaattgcaaata |
28014276 |
T |
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| Q |
201 |
gcaaagatcttactatcaagtttacc-tgtgaaattttttggcaatttatgcagcatatgtcagttctaagttgttgctctttatgtctcgtaactaaag |
299 |
Q |
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||||||||||||| |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28014277 |
gcaaagatcttacaatcaagttaaccttgtgaaa-tttttggcaatttatgcagcatatgtcagttctaagttgttgctctttatgtcttgtaactaaag |
28014375 |
T |
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| Q |
300 |
ttattgattcatctgccaatac |
321 |
Q |
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|||||||||||||||||||||| |
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| T |
28014376 |
ttattgattcatctgccaatac |
28014397 |
T |
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