View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6890_high_19 (Length: 249)

Name: NF6890_high_19
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6890_high_19
NF6890_high_19
[»] chr7 (3 HSPs)
chr7 (1-231)||(25636039-25636269)
chr7 (73-217)||(10493558-10493702)
chr7 (133-231)||(47363838-47363938)
[»] chr1 (7 HSPs)
chr1 (28-231)||(32617704-32617907)
chr1 (28-112)||(9457469-9457553)
chr1 (28-112)||(9461566-9461650)
chr1 (28-229)||(12990166-12990370)
chr1 (133-224)||(24699938-24700031)
chr1 (133-224)||(9457552-9457645)
chr1 (133-224)||(9461649-9461742)
[»] chr4 (5 HSPs)
chr4 (30-231)||(28146812-28147017)
chr4 (29-231)||(11440419-11440623)
chr4 (28-229)||(38412006-38412204)
chr4 (28-160)||(25967824-25967960)
chr4 (28-231)||(55606381-55606575)
[»] chr5 (4 HSPs)
chr5 (10-219)||(41283293-41283514)
chr5 (28-231)||(19967335-19967540)
chr5 (162-224)||(22927208-22927270)
chr5 (167-231)||(13424771-13424835)
[»] chr2 (4 HSPs)
chr2 (95-229)||(19263669-19263804)
chr2 (133-231)||(37794786-37794886)
chr2 (34-112)||(17989222-17989300)
chr2 (29-62)||(35016693-35016726)
[»] chr6 (3 HSPs)
chr6 (28-189)||(8169126-8169287)
chr6 (136-216)||(10117103-10117183)
chr6 (81-231)||(32296248-32296398)
[»] chr8 (4 HSPs)
chr8 (30-112)||(23490204-23490286)
chr8 (30-151)||(10473844-10473968)
chr8 (95-175)||(45191734-45191814)
chr8 (154-224)||(23490111-23490181)
[»] chr3 (1 HSPs)
chr3 (133-218)||(7299043-7299129)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 25636269 - 25636039
Alignment:
Q  1 atatactaaaaggttttaaaaaacggtccgagaaaaaggccgcgacaaaaaggtataggtagatgacgctactgtttttcaccgtttctacatagtgaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25636269 atatactaaaaggttttaaaaaacggtccgagaaaaaggccgcgacaaaaaggtataggtagatgatgctactgtttttcaccgtttctacatagtgaac 25636170  T
Q  101 aaaaatcacgaccaaaagccataatagccacaacgaaacaccgttacggccgtaaaaaatgtcgttcatgacaataaacacataatccgggtattttttc 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25636169 aaaaatcacgaccaaaagccataatagccgcaacgaaacaccgttacggccgtaaaaaatgtcgttcatgacaataaacacataatccgggtattttttc 25636070  T
Q  201 gattgagatagatgaaaataatatctttagt 231  Q
     ||||| |||||||||||| |||||||||||    
T  25636069 aattgaaatagatgaaaatcatatctttagt 25636039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 217
Target Start/End: Complemental strand, 10493702 - 10493558
Alignment:
Q  73 tgtttttcaccgtttctacatagtgaacaaaaatcacgaccaaaagccataatagccacaacgaaacaccgttacggccgtaaaaaatgtcgttcatgac 172  Q
    |||||||||| |||| |||  ||||| ||||||||||||| ||| | | ||| |||| | || ||||||||||| ||||| | |||||| | ||||| ||    
T  10493702 tgtttttcactgtttgtacggagtgaccaaaaatcacgacaaaacgtcctaacagccgcgacaaaacaccgttaaggccgcataaaatgccattcataac 10493603  T
Q  173 aataaacacataatccgggtattttttcgattgagatagatgaaa 217  Q
    |||| |||||||||  |  ||||||||| |||||||| |||||||    
T  10493602 aatagacacataatatgtatattttttcaattgagatggatgaaa 10493558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 47363938 - 47363838
Alignment:
Q  133 acgaaacaccgttacggccgtaaaaaat-gtcgttcatgacaataaacacataatccgggtattttttcgattgaga-tagatgaaaataatatctttag 230  Q
    ||||||||||| |||| ||| ||||||| | |||||||||||||| ||| | ||||||| ||||||||| ||||||| ||||||||||  |||| |||||    
T  47363938 acgaaacaccgatacgaccgcaaaaaattgccgttcatgacaatagacatagaatccggatattttttcaattgagattagatgaaaagcatatttttag 47363839  T
Q  231 t 231  Q
    |    
T  47363838 t 47363838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 32617907 - 32617704
Alignment:
Q  28 ccgagaaaaaggccgcgacaaaaaggtataggtagatgacgctactgtttttcaccgtttctacatagtgaacaaaaatcacgaccaaaagccataatag 127  Q
    |||||||||||||||| ||||||||||||||||||  |||| ||| |||||||||||||| || | ||||||||||||| ||||| ||| |   | | ||    
T  32617907 ccgagaaaaaggccgccacaaaaaggtataggtagcggacgttaccgtttttcaccgtttttatagagtgaacaaaaattacgacgaaacgttgttacag 32617808  T
Q  128 ccacaacgaaacaccgttacggccgtaaaaaatgtcgttcatgacaataaacacataatccgggtattttttcgattgagatagatgaaaataatatctt 227  Q
    || | |||||||||||||||||||  || |||||  ||||||||||||| ||| | ||||||||||||||||| |||||||||||||||||| |||| ||    
T  32617807 ccgcgacgaaacaccgttacggcccaaagaaatgcagttcatgacaatagacatagaatccgggtattttttcaattgagatagatgaaaatcatatttt 32617708  T
Q  228 tagt 231  Q
    ||||    
T  32617707 tagt 32617704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 9457469 - 9457553
Alignment:
Q  28 ccgagaaaaaggccgcgacaaaaaggtataggtagatgacgctactgtttttcaccgtttctacatagtgaacaaaaatcacgac 112  Q
    ||||| |||||||||||||||||||||||||| ||  |||| | | |||||||||||    | || |||||||||||||||||||    
T  9457469 ccgagtaaaaggccgcgacaaaaaggtataggcagcggacgttgccgtttttcaccgaaatttcagagtgaacaaaaatcacgac 9457553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 9461566 - 9461650
Alignment:
Q  28 ccgagaaaaaggccgcgacaaaaaggtataggtagatgacgctactgtttttcaccgtttctacatagtgaacaaaaatcacgac 112  Q
    ||||| |||||||||||||||||||||||||| ||  |||| | | |||||||||||    | || |||||||||||||||||||    
T  9461566 ccgagtaaaaggccgcgacaaaaaggtataggcagcggacgttgccgtttttcaccgaaatttcagagtgaacaaaaatcacgac 9461650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 12990166 - 12990370
Alignment:
Q  28 ccgagaaaaaggccgcgacaaaaaggtataggtagatgacgctactg-tttttcaccgtttctacatagtgaacaaaaatcacgaccaaaagccataata 126  Q
    ||||||||||||| |||| ||||||||||||||||  |||| ||| | ||||| ||||||| ||   |||||||||||||||| || |||   | | | |    
T  12990166 ccgagaaaaaggctgcgataaaaaggtataggtagtggacgttaccgttttttgaccgtttttatggagtgaacaaaaatcacaacgaaacatcgttaca 12990265  T
Q  127 gccacaacgaaacaccgttacggccgtaaaaaa-tgtcgttcatgacaataaacacataatccgggtatttttt-cgattgagatagatgaaaataatat 224  Q
    ||  | |||||| |||||||| |||  |||||| ||||||| ||||||||| ||| | |||| || |||||||| |  ||||||| ||||||||| ||||    
T  12990266 gctgcgacgaaataccgttacagccacaaaaaattgtcgtttatgacaatagacatagaatctggatattttttgcagttgagatcgatgaaaatcatat 12990365  T
Q  225 cttta 229  Q
     ||||    
T  12990366 tttta 12990370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 24700031 - 24699938
Alignment:
Q  133 acgaaacaccgttacggccgtaaaaaa--tgtcgttcatgacaataaacacataatccgggtattttttcgattgagatagatgaaaataatat 224  Q
    |||||||||||||||||| | |||| |  ||||||   |||||||| || || || |||| ||||||||| |||||||||||||||||| ||||    
T  24700031 acgaaacaccgttacggcggcaaaatagatgtcgtcattgacaatagacccaaaacccggatattttttcaattgagatagatgaaaattatat 24699938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 9457552 - 9457645
Alignment:
Q  133 acgaaacaccgttacggccgtaaaaaa-tgtcgttcatgacaataaacacataatccgggta-ttttttcgattgagatagatgaaaataatat 224  Q
    ||||||| ||||||| |||| |||||| || |||||||||||||| ||| | ||||| | || ||||||| |||||||||||| ||||| ||||    
T  9457552 acgaaacgccgttacagccgcaaaaaaatgccgttcatgacaatagacatagaatccagatatttttttcaattgagatagataaaaatcatat 9457645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 9461649 - 9461742
Alignment:
Q  133 acgaaacaccgttacggccgtaaaaaa-tgtcgttcatgacaataaacacataatccgggta-ttttttcgattgagatagatgaaaataatat 224  Q
    ||||||| ||||||| |||| |||||| || |||||||||||||| ||| | ||||| | || ||||||| |||||||||||| ||||| ||||    
T  9461649 acgaaacgccgttacagccgcaaaaaaatgccgttcatgacaatagacatagaatccagatatttttttcaattgagatagataaaaatcatat 9461742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 28146812 - 28147017
Alignment:
Q  30 gagaaaaaggccgcgacaaaaaggtataggtagatgacgctactgtttttcaccgtttctacatagtgaacaaaaatcacgaccaaaagccataatagcc 129  Q
    |||||||||||||| ||||||||||||||||||  |||  ||| |||||||||||||| |||| ||||||||||||||||||| ||| | | | | |||     
T  28146812 gagaaaaaggccgcaacaaaaaggtataggtagcggacattaccgtttttcaccgtttttacagagtgaacaaaaatcacgacaaaacgtcgttacagct 28146911  T
Q  130 acaacgaaacaccgttacggccg----taaaaaatgtcgttcatgacaataaacacataatccgggtattttttcgattgagatagatgaaaataatatc 225  Q
     | ||||||||||||||||||||     |||||| | |||||||||||||| ||| | |||| || ||||||||| |||||||||||||||||| ||||     
T  28146912 gcgacgaaacaccgttacggccgcaaaaaaaaaaggccgttcatgacaatagacatagaatctggatattttttcaattgagatagatgaaaatcatatt 28147011  T
Q  226 tttagt 231  Q
    ||||||    
T  28147012 tttagt 28147017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 11440419 - 11440623
Alignment:
Q  29 cgagaaaaaggccgcgacaaaaaggtataggtagatgacgctactg-tttttcaccgtttctacatagtgaacaaaaatcacgaccaaaagccataatag 127  Q
    |||||||||||||||| |||||||||||||||||  ||   ||  | ||||| || |||| |||| ||||||||||| | ||||| ||||||||| | ||    
T  11440419 cgagaaaaaggccgcggcaaaaaggtataggtagtcgatattatcgattttttactgtttttacacagtgaacaaaagttacgacgaaaagccattacag 11440518  T
Q  128 ccacaacgaaacaccgttacggcc-gtaaaaaatgtcgttcatgacaataaacacataatccgggtattttttcgattgagatagatgaaaataatatct 226  Q
    || | | |||||||||||||  ||   |||||||||| |||||||||||| ||||||| ||||| || |||||| ||| |||||||||||||| |||| |    
T  11440519 cctcgatgaaacaccgttacaaccacaaaaaaatgtcattcatgacaatagacacatagtccggataatttttcaattaagatagatgaaaatcatattt 11440618  T
Q  227 ttagt 231  Q
    |||||    
T  11440619 ttagt 11440623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 229
Target Start/End: Complemental strand, 38412204 - 38412006
Alignment:
Q  28 ccgagaaaaaggccgcgacaaaaaggtataggtagatgacgctactgtttttcaccgtttctacatagtgaacaaaaatcacgaccaaaagccataatag 127  Q
    ||||||||||||| ||||||||||| |||||||||  |||| ||| | ||   |||||||  ||| ||||||||||||||| ||| ||| ||  | | ||    
T  38412204 ccgagaaaaaggcggcgacaaaaag-tataggtagccgacgttaccggtt---accgttttcacagagtgaacaaaaatcaagacgaaacgctgttacag 38412109  T
Q  128 ccacaacgaaacaccgttacggccgtaaaa-aatgtcgttcatgacaataaacacataatccgggtattttttcgattgagatagatgaaaataatatct 226  Q
    || | |||||||||| ||||||||| |||| ||||||||||||||||||| ||||  |||| |  ||| ||||| ||| |||||||||||||| |||| |    
T  38412108 ccgcgacgaaacaccattacggccgcaaaagaatgtcgttcatgacaatagacaccaaatctgaatatcttttcaattaagatagatgaaaatcatattt 38412009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 160
Target Start/End: Original strand, 25967824 - 25967960
Alignment:
Q  28 ccgagaaaaaggccgcgacaaaaaggtataggtagatgacgctactgtttttcaccgtttctacat----agtgaacaaaaatcacgaccaaaagccata 123  Q
    ||||||| ||||| |||||||||||||||||||||  |||| ||| ||||| |||||||| |||||    ||||||||||||||||||| ||| ||| |     
T  25967824 ccgagaataaggctgcgacaaaaaggtataggtagcggacgttaccgttttccaccgtttttacatacagagtgaacaaaaatcacgacgaaatgccgtt 25967923  T
Q  124 atagccacaacgaaacaccgttacggccgtaaaaaat 160  Q
    | | || | |||||||||||||||||| | |||||||    
T  25967924 acaaccgcgacgaaacaccgttacggctgcaaaaaat 25967960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 55606575 - 55606381
Alignment:
Q  28 ccgagaaaaaggccgcgacaaaaaggtataggtagatgacgctactgtttttcaccgtttctacatagtgaacaaaaatcacgaccaaaagccataatag 127  Q
    |||||||||||||| ||||||||||||||||||||  |||| ||| ||||||||| |         ||||||||||||||||||| |||  || | | ||    
T  55606575 ccgagaaaaaggcc-cgacaaaaaggtataggtagtggacgttaccgtttttcactg---------agtgaacaaaaatcacgacgaaacaccgttacag 55606486  T
Q  128 ccacaacgaaacaccgttacggccgtaaaaaatgtc-gttcatgacaataaacacataatccgggtattttttcgattgagatagatgaaaataatatct 226  Q
    || | | |||||||||||||||||| ||||||  || ||||||||||||| |||   |||||   ||||||||| ||||| |||||||||||| |||| |    
T  55606485 ccgcgatgaaacaccgttacggccgcaaaaaaattctgttcatgacaatagacatggaatccaaatattttttcaattgatatagatgaaaattatattt 55606386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 41283293 - 41283514
Alignment:
Q  10 aaggttttaaaaaacggtccg------agaaaaaggccgcgacaaaaaggtataggtagatgacgctactgtttttcaccgtttctacatagtgaacaaa 103  Q
    |||||||||||||||||||||      ||||||||| || |||||||| ||||||||||  |||| ||| |||||||||||||| |||| ||||||||||    
T  41283293 aaggttttaaaaaacggtccgttactaagaaaaaggtcgtgacaaaaaagtataggtagcggacgttaccgtttttcaccgtttttacagagtgaacaaa 41283392  T
Q  104 aatcacgaccaaaagccataatagccacaacgaaacaccgttacggccgtaaaaaat-gtcgttcatgacaataaacacataatccgggtatttttt--- 199  Q
    ||||||| | ||||||| | | | ||||||||||||| ||||||||||| ||||||| |||| ||||||||||| ||| | ||||| | ||||||||       
T  41283393 aatcacgtcgaaaagccgttacaaccacaacgaaacatcgttacggccgcaaaaaattgtcgctcatgacaatagacataaaatccagatattttttttc 41283492  T
Q  200 --cgattgagatagatgaaaat 219  Q
      | ||||||||||||||||||    
T  41283493 ttcaattgagatagatgaaaat 41283514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 19967335 - 19967540
Alignment:
Q  28 ccgagaaaaaggccgcgacaaaaaggtataggtagatgacgctactgtttttcaccgtttctacatagtgaacaaaaatcacgaccaaaagccataatag 127  Q
    |||||||||||||| || |||||||||| ||||||  || | ||| |||||||||||||| |||| |||||||||||||| |||  ||| ||| | | ||    
T  19967335 ccgagaaaaaggccacggcaaaaaggtacaggtagccgaagttaccgtttttcaccgtttttacagagtgaacaaaaatctcgaggaaacgccgttacag 19967434  T
Q  128 ccacaacgaaacaccgttacggccg--taaaaaatgtcgttcatgacaataaacacataatccgggtattttttcgattgagatagatgaaaataatatc 225  Q
    |||  ||||||||| ||||||||||   ||||||||| ||||| ||||| | ||| | ||||||| ||||||||| ||||||||| |||||||| ||||     
T  19967435 ccatgacgaaacactgttacggccgcaaaaaaaatgttgttcacgacaacagacatagaatccggatattttttcaattgagatatatgaaaatcatatt 19967534  T
Q  226 tttagt 231  Q
    ||||||    
T  19967535 tttagt 19967540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 22927270 - 22927208
Alignment:
Q  162 tcgttcatgacaataaacacataatccgggtattttttcgattgagatagatgaaaataatat 224  Q
    ||||||||||||||| ||| | ||||||| ||||||||| |||||||||||||||||| ||||    
T  22927270 tcgttcatgacaatagacataaaatccggatattttttcaattgagatagatgaaaatcatat 22927208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 13424835 - 13424771
Alignment:
Q  167 catgacaataaacacataatccgggtattttttcgattgagatagatgaaaataatatctttagt 231  Q
    ||||||| || ||| | ||||||| ||||||||| ||||| ||| ||||||||||||| ||||||    
T  13424835 catgacagtagacatagaatccggatattttttcaattgaaataaatgaaaataatatttttagt 13424771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 19263669 - 19263804
Alignment:
Q  95 gtgaacaaaaatcacgaccaaaagccataatagccacaacgaaacaccgttacggccgtaaaaaa-tgtcgttcatgacaataaacacataatccgggta 193  Q
    |||||||||||||| ||| ||| | ||| ||||||||||  ||||||||||||||||| |||||| ||||||||||||||||| | | | ||||  | ||    
T  19263669 gtgaacaaaaatcatgacgaaacgtcattatagccacaattaaacaccgttacggccgcaaaaaactgtcgttcatgacaatagatatagaatcaagata 19263768  T
Q  194 ttttttcgattgagatagatgaaaataatatcttta 229  Q
    || |||| |||||||||||||||||| |||| ||||    
T  19263769 ttgtttcaattgagatagatgaaaatcatattttta 19263804  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 37794886 - 37794786
Alignment:
Q  133 acgaaacaccgttacggccgtaaaaaa--tgtcgttcatgacaataaacacataatccgggtattttttcgattgagatagatgaaaataatatctttag 230  Q
    |||||||||||||||||| | ||||||  ||||||||||||||| | ||| | |||| || ||||||||| ||||||||||| |||||| |||| |||||    
T  37794886 acgaaacaccgttacggctgcaaaaaaaatgtcgttcatgacaaaagacatagaatctggatattttttcaattgagatagaagaaaatcatatttttag 37794787  T
Q  231 t 231  Q
    |    
T  37794786 t 37794786  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 17989300 - 17989222
Alignment:
Q  34 aaaaggccgcgacaaaaaggtataggtagatgacgctactgtttttcaccgtttctacatagtgaacaaaaatcacgac 112  Q
    |||||||| | ||||||||||||||||||   ||  ||| |||||||||||||| |||  |||||||||||||||||||    
T  17989300 aaaaggccacaacaaaaaggtataggtagcgaacattaccgtttttcaccgtttttactaagtgaacaaaaatcacgac 17989222  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 35016726 - 35016693
Alignment:
Q  29 cgagaaaaaggccgcgacaaaaaggtataggtag 62  Q
    |||||||| |||||||||||||||||||||||||    
T  35016726 cgagaaaatggccgcgacaaaaaggtataggtag 35016693  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 189
Target Start/End: Complemental strand, 8169287 - 8169126
Alignment:
Q  28 ccgagaaaaaggccgcgacaaaaaggtataggtagatgacgctactgtttttcaccgtttctacatagtgaacaaaaatcacgaccaaaagccataatag 127  Q
    |||||||||||| | |||||||| |||||||||||  |||| ||| |||||||||  ||| |||| ||||||||||||||||||| ||| | | | | ||    
T  8169287 ccgagaaaaaggtcacgacaaaa-ggtataggtagtcgacgttaccgtttttcactatttttacagagtgaacaaaaatcacgacgaaacgtcgttacag 8169189  T
Q  128 ccacaacgaaacaccgttacggcc-gtaaaaaatgtcgttcatgacaataaacacataatccg 189  Q
    || | |||||||||||||||||||   |||||||| |||||||||||||| ||| | ||||||    
T  8169188 ccgcgacgaaacaccgttacggccacaaaaaaatgccgttcatgacaatagacatagaatccg 8169126  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 10117103 - 10117183
Alignment:
Q  136 aaacaccgttacggccgtaaaaaatgtcgttcatgacaataaacacataatccgggtattttttcgattgagatagatgaa 216  Q
    |||||| |||| ||||| ||||||||||||||||||||||| ||||| ||||||| ||||||| | |||||||||||||||    
T  10117103 aaacactgttaaggccgcaaaaaatgtcgttcatgacaatagacacagaatccggatatttttccaattgagatagatgaa 10117183  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 231
Target Start/End: Original strand, 32296248 - 32296398
Alignment:
Q  81 accgtttctacatagtgaacaaaaatcacgaccaaaagccataatagccacaacgaaacaccgttacggccgtaaaaaatgtcgttcatgacaataaaca 180  Q
    ||||||| |||| ||||||||||||||||||  |||  || | || |||   ||||||||  |||||||||  ||||||||  ||||||||||||| |||    
T  32296248 accgtttttacagagtgaacaaaaatcacgatgaaacaccgttatcgccgtgacgaaacattgttacggccacaaaaaatgcggttcatgacaatagaca 32296347  T
Q  181 cataatccgggtattttttcgattgagatagatgaaaataatatctttagt 231  Q
    || |||| |  ||||||||| |||||||||||||||||| |||| ||||||    
T  32296348 caaaatctgaatattttttcaattgagatagatgaaaatcatatttttagt 32296398  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 23490286 - 23490204
Alignment:
Q  30 gagaaaaaggccgcgacaaaaaggtataggtagatgacgctactgtttttcaccgtttctacatagtgaacaaaaatcacgac 112  Q
    |||||||||||||||||||||||||||||||||  || | |||  ||||||||| ||| |||| |||||||||||||||||||    
T  23490286 gagaaaaaggccgcgacaaaaaggtataggtagccgaagttaccatttttcaccatttttacagagtgaacaaaaatcacgac 23490204  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 10473968 - 10473844
Alignment:
Q  30 gagaaaaaggccgcgacaaaaaggt---ataggtagatgacgctactgtttttcaccgtttctacatagtgaacaaaaatcacgaccaaaagccataata 126  Q
    ||||||||||||| |||||||||||   ||||||||  |||  ||||||||||||| |||| |||| ||||||||||||||||||| ||| | ||| | |    
T  10473968 gagaaaaaggccgtgacaaaaaggtggtataggtagccgacattactgtttttcactgtttttacagagtgaacaaaaatcacgacgaaacgacattaca 10473869  T
Q  127 gccacaacgaaacaccgttacggcc 151  Q
    ||  | ||||||||| |||||||||    
T  10473868 gctgcgacgaaacactgttacggcc 10473844  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 45191814 - 45191734
Alignment:
Q  95 gtgaacaaaaatcacgaccaaaagccataatagccacaacgaaacaccgttacggccgtaaaaaatgtcgttcatgacaat 175  Q
    |||||||||||||||||| ||| | ||| | || | | ||||||||||||||||||||  |||||||||||||||||||||    
T  45191814 gtgaacaaaaatcacgacgaaacgtcattacagtcgcgacgaaacaccgttacggccgccaaaaatgtcgttcatgacaat 45191734  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 23490181 - 23490111
Alignment:
Q  154 aaaaaatgtcgttcatgacaataaacacataatccgggtattttttcgattgagatagatgaaaataatat 224  Q
    |||||||| |||||||||||||| ||| |  |||||| ||||||||| |||||||||||||||||| ||||    
T  23490181 aaaaaatgccgttcatgacaatagacatagcatccggatattttttcaattgagatagatgaaaatcatat 23490111  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 7299043 - 7299129
Alignment:
Q  133 acgaaacaccgttacggccgtaaaaaatgtcgttcatgacaataaacacataatccgggtattttttcgattgagata-gatgaaaa 218  Q
    |||||| ||| ||||||||| |||||||| ||||||||||| || | ||| ||||||| ||||||||| ||||||||| ||||||||    
T  7299043 acgaaagacctttacggccgcaaaaaatgccgttcatgacactagagacaaaatccggatattttttcaattgagatacgatgaaaa 7299129  T

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