View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6890_high_3 (Length: 592)
Name: NF6890_high_3
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6890_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 16087386 - 16087091
Alignment:
| Q |
20 |
tatgttggaacgtataatcatattataatgtaacgtgtaaagttctttgaaccgagcgcctgactaatatgttaaacatgtttgctttttaaagctttgc |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16087386 |
tatgttggaacatataatcatattataatgtg----gtaaagttctttgaaccgagcgcctgactaatatgttaaacatgtttgctttttaaagctttgc |
16087291 |
T |
|
| Q |
120 |
tggtttataggcctgtgattctagcgtgatatgatctaattaattggtttgtgtgttatcagctgtagaaaatttattgcaattaataatagatttggcc |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16087290 |
tggtttataggcttgtgattctagcgtgatatgatctaattaattggtttgtgtgttatcagctgtagaaaatttattgcaatt---aatagatttggcc |
16087194 |
T |
|
| Q |
220 |
aagtttatatatgtgtctatctgtatagaatagattctgtatatctgaaataagtttgtttaattaagtaaactgctttcattatcctcccatgagaagg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16087193 |
aagtttatatatgtgtctatctgtatagaatagattctgtatatctgaaataagtttgt----ttaagtaaactgctttcattatcctcccatgagaagg |
16087098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 370 - 580
Target Start/End: Complemental strand, 16087045 - 16086832
Alignment:
| Q |
370 |
ttaaatttgatgtccacaaatgaaattttaggatgaaggtatttgaattgatgaatttgtttgtgtcttttataaaagcaaattagcttgttggaatacg |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
16087045 |
ttaaatttgatgtccacaaatgaaattttaggatgaaggtatttgaattgatgaatttgtttgtgttttttataaaagcaaataagcttgttggaatacg |
16086946 |
T |
|
| Q |
470 |
tacaatagctctcgaggtattagttcagttcttgttttttaaggattaatgtgtgtttgatactatgagccaat---tgatttactgtgcaagttttaag |
566 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
16086945 |
tacaatatctctcgaggtattagttcagttcttgttttttaaggattaatgtgtgtttgatactatgagccaatttattatttactgtgcaagttttaag |
16086846 |
T |
|
| Q |
567 |
atgtgtttgatatt |
580 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
16086845 |
aagcgtttgatatt |
16086832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 514 - 580
Target Start/End: Original strand, 31307447 - 31307513
Alignment:
| Q |
514 |
attaatgtgtgtttgatactatgagccaattgatttactgtgcaagttttaagatgtgtttgatatt |
580 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| |||||| |||||||||| ||||||||| |
|
|
| T |
31307447 |
attaatgtgtgtttgatattatgagtcaattgatttaccgtgcaaattttaagatgcttttgatatt |
31307513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University