View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6890_high_8 (Length: 404)

Name: NF6890_high_8
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6890_high_8
NF6890_high_8
[»] chr6 (3 HSPs)
chr6 (180-389)||(8395536-8395748)
chr6 (22-156)||(8395207-8395341)
chr6 (212-366)||(8406130-8406294)
[»] chr3 (1 HSPs)
chr3 (326-363)||(30292864-30292901)
[»] chr8 (1 HSPs)
chr8 (326-366)||(18079758-18079798)
[»] scaffold1213 (1 HSPs)
scaffold1213 (326-363)||(804-841)
[»] chr5 (2 HSPs)
chr5 (326-363)||(1409413-1409450)
chr5 (327-359)||(2415461-2415493)
[»] chr4 (3 HSPs)
chr4 (327-364)||(3812311-3812348)
chr4 (326-363)||(4937764-4937801)
chr4 (326-363)||(36804574-36804611)
[»] chr2 (2 HSPs)
chr2 (331-363)||(14825629-14825661)
chr2 (327-363)||(19581019-19581055)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 180 - 389
Target Start/End: Original strand, 8395536 - 8395748
Alignment:
Q  180 ctatgttcagaaacaagaaagaaatctactactaatttatctacttctaatttaagaatgttaactctctctcagtctccacttacgaccctc--gggtg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  8395536 ctatgttcagaaacaagaaagaaatctactactaatttatctacttctaatttaagaatgttaactctctctcagtctccacttacgaccctcaagggtg 8395635  T
Q  278 atttagtatcaattatatttatccaaaatcacgttttatcttcttttgtaaataagtgattttcatatatatttaa-ttttttctttggtaactttgttg 376  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||  |||| ||||    
T  8395636 atttagtatcaattatatttatccaaaatcacgttttattttcttttgtaaataagtgattttcaaatatatttaatttttttctttggcgacttcgttg 8395735  T
Q  377 tatgtgacgttat 389  Q
    |||||||||||||    
T  8395736 tatgtgacgttat 8395748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 8395207 - 8395341
Alignment:
Q  22 acagatatttggagggacgagggtagcaatgaaataagaaacttgtgatcctcgtatatatacttttgtatttatttcatctccttttgttactttttct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8395207 acagatatttggagggacgagggtagcaatgaaataagaaacttgtgatcctcgtatatatacttttgtatttatttcatctccttttgttactttttct 8395306  T
Q  122 gacgaaaattccttgtactactttgttttcagatt 156  Q
    |||||||||||||||||||||||||||||||||||    
T  8395307 gacgaaaattccttgtactactttgttttcagatt 8395341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 366
Target Start/End: Complemental strand, 8406294 - 8406130
Alignment:
Q  212 taatttatctacttctaatttaagaatgttaa-ctctctctcagtctccactta-------cgaccctc--gggtgatttagtatcaattatatttatcc 301  Q
    |||||||||||||||||||||||||||||||  |||||||||   |||||||||       ||||| ||  || ||| |||| ||||||||| ||||  |    
T  8406294 taatttatctacttctaatttaagaatgttattctctctctcgacctccacttaagagttacgaccatcaaggttgacttagaatcaattatttttacac 8406195  T
Q  302 aaaatcacgttttatcttcttttgtaaataagtgattttcatatatatttaattttttctttggt 366  Q
    ||||||| ||||| ||||||||| |  | |||||||||| |  |||||||| |||||||||||||    
T  8406194 aaaatcaagttttttcttctttttttcaaaagtgatttttacttatatttagttttttctttggt 8406130  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 30292864 - 30292901
Alignment:
Q  326 taaataagtgattttcatatatatttaattttttcttt 363  Q
    |||||||||||||||||||| |||||||||||||||||    
T  30292864 taaataagtgattttcatatttatttaattttttcttt 30292901  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 366
Target Start/End: Original strand, 18079758 - 18079798
Alignment:
Q  326 taaataagtgattttcatatatatttaattttttctttggt 366  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  18079758 taaataagtgattttcatgtatatttaattttttctgtggt 18079798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1213 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1213
Description:

Target: scaffold1213; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 804 - 841
Alignment:
Q  326 taaataagtgattttcatatatatttaattttttcttt 363  Q
    ||||||||||||||||| || |||||||||||||||||    
T  804 taaataagtgattttcacatttatttaattttttcttt 841  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 1409413 - 1409450
Alignment:
Q  326 taaataagtgattttcatatatatttaattttttcttt 363  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  1409413 taaataagtgattttcacatatattaaattttttcttt 1409450  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 2415461 - 2415493
Alignment:
Q  327 aaataagtgattttcatatatatttaatttttt 359  Q
    ||||||||||||||||||||||||| |||||||    
T  2415461 aaataagtgattttcatatatatttcatttttt 2415493  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 3812348 - 3812311
Alignment:
Q  327 aaataagtgattttcatatatatttaattttttctttg 364  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  3812348 aaataaatgattttcacatatatttaattttttctttg 3812311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 4937764 - 4937801
Alignment:
Q  326 taaataagtgattttcatatatatttaattttttcttt 363  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  4937764 taaataagtgattttcatatatattaagttttttcttt 4937801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 36804611 - 36804574
Alignment:
Q  326 taaataagtgattttcatatatatttaattttttcttt 363  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  36804611 taaataagtgattttcatatatatttggttttttcttt 36804574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 14825629 - 14825661
Alignment:
Q  331 aagtgattttcatatatatttaattttttcttt 363  Q
    ||||||||||||||| |||||||||||||||||    
T  14825629 aagtgattttcatatctatttaattttttcttt 14825661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 19581055 - 19581019
Alignment:
Q  327 aaataagtgattttcatatatatttaattttttcttt 363  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  19581055 aaataagtgattttcatatctatttcattttttcttt 19581019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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