View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6890_low_1 (Length: 634)

Name: NF6890_low_1
Description: NF6890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6890_low_1
NF6890_low_1
[»] chr2 (32 HSPs)
chr2 (244-621)||(45248358-45248729)
chr2 (244-518)||(44863757-44864035)
chr2 (82-247)||(45248752-45248917)
chr2 (567-621)||(44864078-44864132)
chr2 (21-78)||(17688151-17688210)
chr2 (30-80)||(5856113-5856164)
chr2 (30-82)||(14793248-14793302)
chr2 (33-84)||(7327762-7327815)
chr2 (21-84)||(8214557-8214622)
chr2 (33-84)||(8898293-8898346)
chr2 (33-79)||(30728933-30728979)
chr2 (33-80)||(32845672-32845721)
chr2 (33-80)||(36944240-36944289)
chr2 (21-80)||(39341353-39341414)
chr2 (32-79)||(41611569-41611618)
chr2 (33-79)||(22552504-22552552)
chr2 (33-77)||(24413611-24413656)
chr2 (33-79)||(32845456-32845504)
chr2 (33-77)||(33441777-33441822)
chr2 (30-80)||(39341264-39341316)
chr2 (33-79)||(45632542-45632590)
chr2 (33-61)||(1243337-1243365)
chr2 (33-78)||(5558462-5558509)
chr2 (33-82)||(8214339-8214390)
chr2 (34-83)||(11115255-11115306)
chr2 (33-61)||(12028330-12028358)
chr2 (33-84)||(13691738-13691792)
chr2 (34-79)||(18544017-18544064)
chr2 (33-78)||(23045167-23045214)
chr2 (33-82)||(24951900-24951951)
chr2 (33-78)||(31108593-31108640)
chr2 (34-81)||(43015212-43015260)
[»] chr1 (15 HSPs)
chr1 (535-621)||(28754723-28754809)
chr1 (21-79)||(24004748-24004808)
chr1 (30-79)||(17724273-17724324)
chr1 (33-80)||(28943651-28943698)
chr1 (33-84)||(10176431-10176484)
chr1 (34-79)||(15710806-15710852)
chr1 (33-80)||(16555539-16555588)
chr1 (33-80)||(37847600-37847649)
chr1 (21-80)||(25170954-25171014)
chr1 (30-84)||(26399524-26399580)
chr1 (21-58)||(26486556-26486593)
chr1 (34-84)||(46583820-46583872)
chr1 (33-80)||(1632317-1632365)
chr1 (33-78)||(37847781-37847828)
chr1 (34-81)||(46208196-46208246)
[»] chr7 (18 HSPs)
chr7 (33-81)||(18656288-18656337)
chr7 (33-83)||(43596522-43596574)
chr7 (33-84)||(1263954-1264008)
chr7 (21-80)||(5835729-5835789)
chr7 (21-80)||(35097762-35097822)
chr7 (33-79)||(3548762-3548811)
chr7 (33-82)||(15108334-15108386)
chr7 (32-79)||(31417511-31417560)
chr7 (33-80)||(45639734-45639783)
chr7 (33-81)||(19336292-19336343)
chr7 (21-77)||(25622137-25622194)
chr7 (33-79)||(28000128-28000176)
chr7 (33-79)||(44412542-44412590)
chr7 (34-79)||(18655375-18655422)
chr7 (33-80)||(24374511-24374561)
chr7 (21-58)||(25622356-25622395)
chr7 (30-58)||(48104530-48104558)
chr7 (33-84)||(48847930-48847984)
[»] chr4 (20 HSPs)
chr4 (21-79)||(23981121-23981181)
chr4 (21-79)||(9884954-9885013)
chr4 (34-82)||(12144791-12144840)
chr4 (33-78)||(8590645-8590692)
chr4 (33-80)||(3475484-3475533)
chr4 (33-80)||(12878673-12878722)
chr4 (33-80)||(15782260-15782309)
chr4 (33-80)||(28292051-28292100)
chr4 (33-79)||(7086076-7086124)
chr4 (34-80)||(13033137-13033185)
chr4 (33-79)||(26144157-26144205)
chr4 (21-58)||(40450490-40450527)
chr4 (33-79)||(42861624-42861672)
chr4 (33-79)||(46360903-46360951)
chr4 (34-78)||(48613061-48613106)
chr4 (33-77)||(54097280-54097325)
chr4 (33-78)||(22451933-22451980)
chr4 (33-80)||(24670735-24670785)
chr4 (33-80)||(31110250-31110300)
chr4 (33-78)||(46360688-46360735)
[»] chr5 (16 HSPs)
chr5 (33-81)||(34889711-34889759)
chr5 (33-80)||(31261225-31261272)
chr5 (33-79)||(18254378-18254426)
chr5 (33-78)||(1497329-1497376)
chr5 (21-80)||(38861094-38861154)
chr5 (21-85)||(5661872-5661938)
chr5 (30-77)||(4221737-4221786)
chr5 (21-78)||(24801778-24801836)
chr5 (21-78)||(4633954-4634014)
chr5 (33-79)||(20992701-20992749)
chr5 (34-80)||(28593535-28593583)
chr5 (33-78)||(9672897-9672944)
chr5 (33-78)||(10598319-10598366)
chr5 (33-78)||(13012435-13012482)
chr5 (33-78)||(13083845-13083892)
chr5 (33-78)||(36518869-36518916)
[»] chr3 (25 HSPs)
chr3 (33-84)||(23388719-23388770)
chr3 (21-79)||(53667679-53667740)
chr3 (21-84)||(55090241-55090306)
chr3 (33-79)||(52491572-52491620)
chr3 (21-78)||(40066706-40066765)
chr3 (34-79)||(54012357-54012404)
chr3 (21-80)||(1421535-1421597)
chr3 (33-79)||(13003906-13003955)
chr3 (33-81)||(21549991-21550041)
chr3 (33-80)||(3820492-3820541)
chr3 (21-80)||(3841179-3841240)
chr3 (21-81)||(24286383-24286447)
chr3 (33-80)||(31341451-31341500)
chr3 (33-84)||(53523386-53523439)
chr3 (21-79)||(31341225-31341285)
chr3 (32-78)||(44986750-44986798)
chr3 (29-58)||(51460769-51460798)
chr3 (34-80)||(54087741-54087789)
chr3 (30-58)||(17342863-17342891)
chr3 (33-80)||(25924039-25924089)
chr3 (29-78)||(33898073-33898124)
chr3 (21-80)||(35359640-35359700)
chr3 (33-80)||(41747304-41747354)
chr3 (33-80)||(45333846-45333896)
chr3 (33-80)||(48418871-48418919)
[»] chr8 (17 HSPs)
chr8 (21-80)||(23564100-23564161)
chr8 (34-77)||(43585368-43585411)
chr8 (33-84)||(3448882-3448935)
chr8 (33-78)||(23566136-23566182)
chr8 (33-86)||(31343356-31343412)
chr8 (33-80)||(38687521-38687570)
chr8 (29-58)||(4105286-4105315)
chr8 (34-80)||(22686741-22686789)
chr8 (33-79)||(23565893-23565941)
chr8 (34-80)||(38132072-38132120)
chr8 (33-78)||(3785525-3785572)
chr8 (33-80)||(5160509-5160559)
chr8 (35-80)||(11961115-11961162)
chr8 (22-58)||(16093631-16093667)
chr8 (21-57)||(29346323-29346359)
chr8 (32-79)||(39302125-39302173)
chr8 (22-58)||(40770552-40770588)
[»] chr6 (17 HSPs)
chr6 (33-79)||(1309785-1309833)
chr6 (30-79)||(1310078-1310130)
chr6 (33-80)||(24602428-24602477)
chr6 (30-78)||(10790341-10790390)
chr6 (33-79)||(25567701-25567749)
chr6 (34-82)||(31826417-31826468)
chr6 (30-80)||(33552777-33552829)
chr6 (33-78)||(2181317-2181364)
chr6 (33-78)||(7017308-7017355)
chr6 (33-78)||(7313451-7313498)
chr6 (33-80)||(10366399-10366449)
chr6 (34-81)||(11336651-11336701)
chr6 (32-77)||(15959602-15959649)
chr6 (21-79)||(19376065-19376125)
chr6 (33-80)||(21604364-21604414)
chr6 (34-75)||(33225600-33225643)
chr6 (33-78)||(33352625-33352672)
[»] scaffold0334 (2 HSPs)
scaffold0334 (33-78)||(4311-4357)
scaffold0334 (21-79)||(4071-4131)
[»] scaffold0009 (1 HSPs)
scaffold0009 (21-58)||(263225-263263)
[»] scaffold0111 (1 HSPs)
scaffold0111 (33-79)||(29693-29741)


Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 244 - 621
Target Start/End: Complemental strand, 45248729 - 45248358
Alignment:
Q  244 aacaggttagaatttctcatccttcatattatctgttttattattataaaggttttataatttatacagttcaaatatgaatgcatgaatgcatgcacat 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45248729 aacaggttagaatttctcatccttcatattatctgttttattattataaaggttttataatttatacagttcaaatatgaatgcatgaatgcatgcacat 45248630  T
Q  344 gtttgtttgtgttttgtgttataggtggttttctgttttaatggctgtgaattcaaatgctgatgctgttttatttgatcatcatgagaatgaggttttg 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||    
T  45248629 gtttgtttgtgttttgtgttataggtggttttctgttttaatggctgtgaattcaaatgctgat------ttatttgatcatcatgagaatgaggttttg 45248536  T
Q  444 gggttcaactctataataaggtctaatgttaacgttggtctctcttgttctgaaatcctaatctgtgatgttggaagaaccagttgttcaagaatgtttg 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45248535 gggttcaactctataataaggtctaatgttaacgttggtctctcttgttctgaaatcctaatctgtgatgttggaagaaccagttgttcaagaatgtttg 45248436  T
Q  544 atgtttatgatggagggtgtggtgggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtg 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45248435 atgtttatgatggagggtgtggtgggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtg 45248358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 244 - 518
Target Start/End: Original strand, 44863757 - 44864035
Alignment:
Q  244 aacaggttagaatttctcatccttcatattatc-tgttttattattataaaggttttataatttatacagttcaaatatgaatgcatgaatgcatgcaca 342  Q
    |||||||| |||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||| |||||||||||| ||||| |  ||||||||    
T  44863757 aacaggtttgaatttctcatccttcatatgatcctgttttatcattataaaggttttatgatttatacatttcaaatatgaacgcatgta--catgcaca 44863854  T
Q  343 tgtttgtttgtgttttgt-----gttataggtggttttctgttttaatggctgtgaattcaaatgctgatgctgttttatttgatcatcatgagaatgag 437  Q
    ||||||||||||||||||     ||||||||||||||||||||   || ||| |||||| |||||||||||||||||||||||||||||||||||||| |    
T  44863855 tgtttgtttgtgttttgtgttgtgttataggtggttttctgttactatagctatgaatttaaatgctgatgctgttttatttgatcatcatgagaatggg 44863954  T
Q  438 gttttggggttcaactctataataaggtctaatgttaacgttggtctctcttgttctgaaatcctaatctgtgatgttgga 518  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  44863955 gttttggggtttaactctataataaggtttaatgttaacgttggtctctcttgttctcaaaccctaatctgtgatgttgga 44864035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 82 - 247
Target Start/End: Complemental strand, 45248917 - 45248752
Alignment:
Q  82 attctgaatcaaatatagagacaagttctgataaaacaaattaatatgacttgataccaagaaagcaccaagatttgtattcaaagaaagaacaaaccaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45248917 attctgaatcaaatatagagacaagttctgataaaacaaattaatatgacttgataccaagaaagcaccaagatttgtattcaaagaaagaacgaaccaa 45248818  T
Q  182 gattttctcaacaacaaaagaagtaaccattcttcatacaacccaactcaactcaaacaaacaaca 247  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45248817 gattttctcaacaacaaaagaagtaaccattcttcaaacaacccaactcaactcaaacaaacaaca 45248752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 567 - 621
Target Start/End: Original strand, 44864078 - 44864132
Alignment:
Q  567 gggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtg 621  Q
    ||||||||||| |||||||||||||||||| |||| | |||||| ||||||||||    
T  44864078 gggaaagtaggaaaattttcatgtgggttggtgaaaaatgaagaggagaaaagtg 44864132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 17688151 - 17688210
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||| ||| ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  17688151 tattttacaggggaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccc 17688210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 5856164 - 5856113
Alignment:
Q  30 ggagaaaacaaaaaatgacctatattac-atggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  5856164 ggagaaaacaaaaaatgacctatattactggggtaaaacaccattaacccta 5856113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 14793302 - 14793248
Alignment:
Q  30 ggagaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctata 82  Q
    |||||||| ||||||||||||||||||||   |||||| ||||||||||||||||    
T  14793302 ggagaaaataaaaaatgacctatattacagggggtaaaacaccattaaccctata 14793248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 7327815 - 7327762
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctatatt 84  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||| ||||    
T  7327815 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccctttatt 7327762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 8214557 - 8214622
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctatatt 84  Q
    ||||||| |||  ||||| |||||||||||||||||||   |||||| ||||||||||||||||||    
T  8214557 tattttacagggaaaaaccaaaaatgacctatattacagggggtaaagcaccattaaccctatatt 8214622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 8898346 - 8898293
Alignment:
Q  33 gaaaacaaaaaatgacctatattac--atggtaaatcaccattaaccctatatt 84  Q
    |||||| ||||||||||||||||||  | |||||| ||||||||||||||||||    
T  8898346 gaaaaccaaaaatgacctatattacagagggtaaagcaccattaaccctatatt 8898293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 30728933 - 30728979
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatggtaaatcaccattaaccct 79  Q
    |||||| ||||||||| ||||||||| |||||| |||||||||||||    
T  30728933 gaaaaccaaaaatgacttatattacagggtaaagcaccattaaccct 30728979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 32845672 - 32845721
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  32845672 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 32845721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 36944240 - 36944289
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  36944240 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 36944289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 39341353 - 39341414
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||| ||| |||||| |||||||||||||||||||   |||||| ||||||||||||||    
T  39341353 tattttacaggggaaaaccaaaaatgacctatattacagggggtaaaacaccattaacccta 39341414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 41611569 - 41611618
Alignment:
Q  32 agaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    |||||||||||||||||||||||||||   |||||| |||||||||||||    
T  41611569 agaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccct 41611618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 22552552 - 22552504
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||   |||||| |||||||||||||    
T  22552552 gaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccct 22552504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 24413656 - 24413611
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca-tggtaaatcaccattaacc 77  Q
    ||||||||||||||||||||||||||  |||||| |||||||||||    
T  24413656 gaaaacaaaaaatgacctatattacagaggtaaagcaccattaacc 24413611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 32845504 - 32845456
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||   |||||| |||||||||||||    
T  32845504 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 32845456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 33441777 - 33441822
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatgg-taaatcaccattaacc 77  Q
    |||||||||||||||||||||||||| || |||| |||||||||||    
T  33441777 gaaaacaaaaaatgacctatattacagggataaaacaccattaacc 33441822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 39341316 - 39341264
Alignment:
Q  30 ggagaaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||||| |||||||||||||||||||   |||||| ||||||||||||||    
T  39341316 ggagaaaaccaaaaatgacctatattacagggggtaaaacaccattaacccta 39341264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 45632590 - 45632542
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||   |||||| |||||||||||||    
T  45632590 gaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccct 45632542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 1243365 - 1243337
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatgg 61  Q
    |||||||||||||||||||||||||||||    
T  1243365 gaaaacaaaaaatgacctatattacatgg 1243337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 5558462 - 5558509
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatgg--taaatcaccattaaccc 78  Q
    |||||||||||||||||||||||||| ||  |||| ||||||||||||    
T  5558462 gaaaacaaaaaatgacctatattacaggggataaagcaccattaaccc 5558509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 8214390 - 8214339
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctata 82  Q
    ||||| ||||||||||||||||||||   |||||| ||||||||||||||||    
T  8214390 gaaaataaaaaatgacctatattacagggggtaaaacaccattaaccctata 8214339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 11115306 - 11115255
Alignment:
Q  34 aaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctatat 83  Q
    |||||||||||| ||||||||||||   |||||| |||||||||||||||||    
T  11115306 aaaacaaaaaataacctatattacagggggtaaaacaccattaaccctatat 11115255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 12028330 - 12028358
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatgg 61  Q
    |||||||||||||||||||||||||||||    
T  12028330 gaaaacaaaaaatgacctatattacatgg 12028358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 13691792 - 13691738
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca---tggtaaatcaccattaaccctatatt 84  Q
    ||||||||||||||||||||||||||    |||||| ||||||||||||| ||||    
T  13691792 gaaaacaaaaaatgacctatattacaggggggtaaagcaccattaaccctttatt 13691738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 18544017 - 18544064
Alignment:
Q  34 aaaacaaaaaatgacctatattac--atggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||  | |||||| |||||||||||||    
T  18544017 aaaacaaaaaatgacctatattacagagggtaaaacaccattaaccct 18544064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 23045214 - 23045167
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    |||||| |||||||||||||||||||   |||||||||||||||||||    
T  23045214 gaaaaccaaaaatgacctatattacaggaggtaaatcaccattaaccc 23045167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 24951951 - 24951900
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatgg--taaatcaccattaaccctata 82  Q
    |||||| ||||||||||||||||||| ||  |||| ||||||||||||||||    
T  24951951 gaaaaccaaaaatgacctatattacaggggttaaagcaccattaaccctata 24951900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 31108593 - 31108640
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  31108593 gaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccc 31108640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 43015212 - 43015260
Alignment:
Q  34 aaaacaaaaaatgacctatattaca-tggtaaatcaccattaaccctat 81  Q
    ||||| |||||||||||||||||||  |||||| |||||||||||||||    
T  43015212 aaaaccaaaaatgacctatattacaggggtaaagcaccattaaccctat 43015260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 535 - 621
Target Start/End: Complemental strand, 28754809 - 28754723
Alignment:
Q  535 gaatgtttgatgtttatgatggagggtgtggtgggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtg 621  Q
    ||||||||||||||  |||||||||||||| |||||||| ||| |||||||||||||||||| |||||| ||| |||||||||||||    
T  28754809 gaatgtttgatgttgttgatggagggtgtgatgggaaaggaggaaaattttcatgtgggttggtgaagaatgatgatgagaaaagtg 28754723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 24004748 - 24004808
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    ||||||| ||| ||||||||||||||||||||||||||   |||||| |||||||||||||    
T  24004748 tattttacaggggaaaacaaaaaatgacctatattacaaggggtaaagcaccattaaccct 24004808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 17724273 - 17724324
Alignment:
Q  30 ggagaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    |||||||||||||||||||||||||||||   |||||| |||||||||||||    
T  17724273 ggagaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccct 17724324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 28943651 - 28943698
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatggtaaatcaccattaacccta 80  Q
    |||||||||||||||||||||||||| | |||| |||| |||||||||    
T  28943651 gaaaacaaaaaatgacctatattacaagataaaacaccgttaacccta 28943698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 10176484 - 10176431
Alignment:
Q  33 gaaaacaaaaaatgacctatattac--atggtaaatcaccattaaccctatatt 84  Q
    |||||||||||||||||||||||||    |||||| ||||||||||||||||||    
T  10176484 gaaaacaaaaaatgacctatattacggggggtaaagcaccattaaccctatatt 10176431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 15710806 - 15710852
Alignment:
Q  34 aaaacaaaaaatgacctatattac-atggtaaatcaccattaaccct 79  Q
    |||||||||||||||||||||||| | |||||| |||||||||||||    
T  15710806 aaaacaaaaaatgacctatattacaagggtaaagcaccattaaccct 15710852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 16555539 - 16555588
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatg--gtaaatcaccattaacccta 80  Q
    |||||||||||||||||||||||||| |  ||||| ||||||||||||||    
T  16555539 gaaaacaaaaaatgacctatattacagggagtaaagcaccattaacccta 16555588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 37847649 - 37847600
Alignment:
Q  33 gaaaacaaaaaatgacctatattacat--ggtaaatcaccattaacccta 80  Q
    ||||||||||||||| |||||||||||  |||||| ||||||||||||||    
T  37847649 gaaaacaaaaaatgaactatattacatggggtaaagcaccattaacccta 37847600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 25171014 - 25170954
Alignment:
Q  21 tattttatagg-agaaaacaaaaaatgacctatattaca-tggtaaatcaccattaacccta 80  Q
    ||||||||||| |||||| ||||||||||||||||||||  |||||| ||||||||||||||    
T  25171014 tattttatagggagaaaa-aaaaaatgacctatattacaggggtaaaacaccattaacccta 25170954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 26399524 - 26399580
Alignment:
Q  30 ggagaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctatatt 84  Q
    |||||||||||||||| ||||||||||||   |||||| ||||||||||||| ||||    
T  26399524 ggagaaaacaaaaaataacctatattacaggaggtaaagcaccattaaccctttatt 26399580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 26486593 - 26486556
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca 58  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  26486593 tattttacaggggaaaacaaaaaatgacctatattaca 26486556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 46583872 - 46583820
Alignment:
Q  34 aaaacaaaaaatgacctatattac--atggtaaatcaccattaaccctatatt 84  Q
    ||||||||||||||||||||||||  | |||||| |||||||||||| |||||    
T  46583872 aaaacaaaaaatgacctatattacagagggtaaagcaccattaacccaatatt 46583820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 1632365 - 1632317
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca-tggtaaatcaccattaacccta 80  Q
    ||||| ||||||||||||||||||||  |||||| ||||||||||||||    
T  1632365 gaaaataaaaaatgacctatattacacgggtaaaacaccattaacccta 1632317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 37847781 - 37847828
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  37847781 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 37847828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 46208246 - 46208196
Alignment:
Q  34 aaaacaaaaaatgacctatattaca---tggtaaatcaccattaaccctat 81  Q
    |||||||||||||||||||||||||    |||||| |||||||||||||||    
T  46208246 aaaacaaaaaatgacctatattacagggaggtaaagcaccattaaccctat 46208196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 18656288 - 18656337
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatgg-taaatcaccattaaccctat 81  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||    
T  18656288 gaaaacaaaaaatgacctatattacagggataaatcaccattaaccctat 18656337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 43596522 - 43596574
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctatat 83  Q
    ||||||||||||||||||||||||||   |||||| |||||||||||||||||    
T  43596522 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccctatat 43596574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 1263954 - 1264008
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca---tggtaaatcaccattaaccctatatt 84  Q
    ||||||||||||||||||||||||||    |||||| ||||||||||||||||||    
T  1263954 gaaaacaaaaaatgacctatattacaagggggtaaaacaccattaaccctatatt 1264008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 5835789 - 5835729
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattacatg-gtaaatcaccattaacccta 80  Q
    ||||||| ||| ||||| |||||||||||||||||||| | ||||| ||||||||||||||    
T  5835789 tattttacaggggaaaataaaaaatgacctatattacaggagtaaaacaccattaacccta 5835729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 35097762 - 35097822
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca-tggtaaatcaccattaacccta 80  Q
    ||||||| ||| | ||||||||||||||||||||||||  |||||| ||||||||||||||    
T  35097762 tattttacagggggaaacaaaaaatgacctatattacaggggtaaaacaccattaacccta 35097822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 3548811 - 3548762
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca---tggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||   ||||||| |||||||||||||    
T  3548811 gaaaacaaaaaatgacctatattacatggtggtaaagcaccattaaccct 3548762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 15108334 - 15108386
Alignment:
Q  33 gaaaacaaaaaatgacctatattac---atggtaaatcaccattaaccctata 82  Q
    |||||||||||||||||||||||||   | |||||| ||||||||||||||||    
T  15108334 gaaaacaaaaaatgacctatattacaggagggtaaagcaccattaaccctata 15108386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 31417511 - 31417560
Alignment:
Q  32 agaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    |||||||||||||||||||||||||||   |||||| |||||||||||||    
T  31417511 agaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 31417560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 45639734 - 45639783
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  45639734 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 45639783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 19336292 - 19336343
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca---tggtaaatcaccattaaccctat 81  Q
    ||||||||||||||||||||||||||    |||||| |||||||||||||||    
T  19336292 gaaaacaaaaaatgacctatattacaggggggtaaagcaccattaaccctat 19336343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 25622194 - 25622137
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca-tggtaaatcaccattaacc 77  Q
    ||||||| ||| |||||| |||||||||||||||||||  |||||| |||||||||||    
T  25622194 tattttacaggggaaaaccaaaaatgacctatattacaggggtaaagcaccattaacc 25622137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 28000128 - 28000176
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||   |||||| |||||||||||||    
T  28000128 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 28000176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 44412542 - 44412590
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||   |||||| |||||||||||||    
T  44412542 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 44412590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 18655422 - 18655375
Alignment:
Q  34 aaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    |||||||||||||||||||||||||   |||||| |||||||||||||    
T  18655422 aaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 18655375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 24374511 - 24374561
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatgg---taaatcaccattaacccta 80  Q
    |||||||||||||||||||||||||| ||   |||| ||||||||||||||    
T  24374511 gaaaacaaaaaatgacctatattacagggggataaagcaccattaacccta 24374561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 25622356 - 25622395
Alignment:
Q  21 tattttataggag--aaaacaaaaaatgacctatattaca 58  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  25622356 tattttataggagggaaaacaaaaaatgacctatattaca 25622395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 48104558 - 48104530
Alignment:
Q  30 ggagaaaacaaaaaatgacctatattaca 58  Q
    |||||||||||||||||||||||||||||    
T  48104558 ggagaaaacaaaaaatgacctatattaca 48104530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 48847984 - 48847930
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca---tggtaaatcaccattaaccctatatt 84  Q
    ||||| ||||||||||||||||||||    |||||| ||||||||||||||||||    
T  48847984 gaaaataaaaaatgacctatattacaggggggtaaaacaccattaaccctatatt 48847930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 23981181 - 23981121
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattacat--ggtaaatcaccattaaccct 79  Q
    ||||||| ||| |||||||||||||||||||||||||||  |||||| |||||||||||||    
T  23981181 tattttacaggggaaaacaaaaaatgacctatattacatgaggtaaaacaccattaaccct 23981121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 9885013 - 9884954
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca-tggtaaatcaccattaaccct 79  Q
    ||||||| ||| ||||||||||||||||||||||||||  |||||| |||||||||||||    
T  9885013 tattttacaggggaaaacaaaaaatgacctatattacaggggtaaaacaccattaaccct 9884954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 12144791 - 12144840
Alignment:
Q  34 aaaacaaaaaatgacctatattaca-tggtaaatcaccattaaccctata 82  Q
    |||||||||||||||||||||||||  |||||| ||||||||||||||||    
T  12144791 aaaacaaaaaatgacctatattacaggggtaaagcaccattaaccctata 12144840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 8590692 - 8590645
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||    
T  8590692 gaaaacaaaaaatgacctatattacagggggtaaatcaccattaaccc 8590645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 3475533 - 3475484
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  3475533 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 3475484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 12878722 - 12878673
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  12878722 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 12878673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 15782309 - 15782260
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  15782309 gaaaacaaaaaatgacctatattacaaggggtaaagcaccattaacccta 15782260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 28292100 - 28292051
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  28292100 gaaaacaaaaaatgacctatattacagggggtaaaacaccattaacccta 28292051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 7086076 - 7086124
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||   |||||| |||||||||||||    
T  7086076 gaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccct 7086124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 13033137 - 13033185
Alignment:
Q  34 aaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    |||||||||||||||||||||||||   |||||| ||||||||||||||    
T  13033137 aaaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 13033185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 26144205 - 26144157
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||   |||||| |||||||||||||    
T  26144205 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 26144157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 40450490 - 40450527
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca 58  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  40450490 tattttacaggggaaaacaaaaaatgacctatattaca 40450527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 42861624 - 42861672
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||   ||||||||| ||||||||||    
T  42861624 gaaaacaaaaaatgacctatattacagggggtaaatcatcattaaccct 42861672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 46360903 - 46360951
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||   |||||| |||||||||||||    
T  46360903 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 46360951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 48613106 - 48613061
Alignment:
Q  34 aaaacaaaaaatgacctatattaca-tggtaaatcaccattaaccc 78  Q
    |||||||||||||||||||||||||  |||||| ||||||||||||    
T  48613106 aaaacaaaaaatgacctatattacaggggtaaagcaccattaaccc 48613061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 54097280 - 54097325
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca-tggtaaatcaccattaacc 77  Q
    ||||||||||||||||||||||||||  |||||| |||||||||||    
T  54097280 gaaaacaaaaaatgacctatattacaggggtaaaacaccattaacc 54097325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 22451980 - 22451933
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  22451980 gaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccc 22451933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 24670735 - 24670785
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca---tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||    |||||| ||||||||||||||    
T  24670735 gaaaacaaaaaatgacctatattacaggggggtaaagcaccattaacccta 24670785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 31110300 - 31110250
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca---tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||    |||||| ||||||||||||||    
T  31110300 gaaaacaaaaaatgacctatattacaggggggtaaaacaccattaacccta 31110250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 46360735 - 46360688
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatgg--taaatcaccattaaccc 78  Q
    |||||||||||||||||||||||||| ||  |||| ||||||||||||    
T  46360735 gaaaacaaaaaatgacctatattacaggggctaaaacaccattaaccc 46360688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 34889711 - 34889759
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatggtaaatcaccattaaccctat 81  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||||||    
T  34889711 gaaaacaaaaaataacctatattacagggtaaagcaccattaaccctat 34889759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 31261225 - 31261272
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatggtaaatcaccattaacccta 80  Q
    |||||||||||||||||||||||||| | |||| ||||||||||||||    
T  31261225 gaaaacaaaaaatgacctatattacaggataaagcaccattaacccta 31261272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 18254378 - 18254426
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  18254378 gaaaacaaaaaatgacctatattacagggggtaaatcaccattaaccct 18254426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 1497376 - 1497329
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||    
T  1497376 gaaaacaaaaaatgacctatattacagggggtaaatcaccattaaccc 1497329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 38861154 - 38861094
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca-tggtaaatcaccattaacccta 80  Q
    ||||||| ||||||||||||||||| || |||||||||  |||||| ||||||||||||||    
T  38861154 tattttacaggagaaaacaaaaaataacttatattacaggggtaaaacaccattaacccta 38861094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 5661872 - 5661938
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctatattc 85  Q
    ||||||| ||| ||||||||||||||| ||||||||||   |||||| |||||||||||||| ||||    
T  5661872 tattttacaggggaaaacaaaaaatgatctatattacagggggtaaagcaccattaaccctaaattc 5661938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 4221786 - 4221737
Alignment:
Q  30 ggagaaaacaaaaaatgacctatattacatgg--taaatcaccattaacc 77  Q
    ||||||||||||||||||||||||||||| ||  |||| |||||||||||    
T  4221786 ggagaaaacaaaaaatgacctatattacaggggctaaaacaccattaacc 4221737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 24801836 - 24801778
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattacatgg-taaatcaccattaaccc 78  Q
    ||||||| |||  ||||||||||||||||||||||||| || |||| ||||||||||||    
T  24801836 tattttacagggaaaaacaaaaaatgacctatattacaaggataaagcaccattaaccc 24801778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 4634014 - 4633954
Alignment:
Q  21 tattttataggag-aaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||| ||||| |||||||||||||||||||||||||   |||||| ||||||||||||    
T  4634014 tattttacaggaggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 4633954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 20992749 - 20992701
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||   ||||||| ||||||||||||    
T  20992749 gaaaacaaaaaatgacctatattacagggggtaaattaccattaaccct 20992701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 28593535 - 28593583
Alignment:
Q  34 aaaacaaaaaatgacctatattacatgg--taaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||| ||  |||| ||||||||||||||    
T  28593535 aaaacaaaaaatgacctatattacaggggttaaagcaccattaacccta 28593583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 9672944 - 9672897
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  9672944 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 9672897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 10598366 - 10598319
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  10598366 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 10598319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 13012482 - 13012435
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  13012482 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 13012435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 13083892 - 13083845
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  13083892 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 13083845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 36518869 - 36518916
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  36518869 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 36518916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 23388770 - 23388719
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatggtaaatcaccattaaccctatatt 84  Q
    |||||||||||||||||||||||||| | |||| ||||||||||||| ||||    
T  23388770 gaaaacaaaaaatgacctatattacaggctaaaacaccattaaccctttatt 23388719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 53667740 - 53667679
Alignment:
Q  21 tattttataggag-aaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    ||||||| ||||| |||||||||||||||||||||||||   ||||||||||||||||||||    
T  53667740 tattttacaggaggaaaacaaaaaatgacctatattacagggggtaaatcaccattaaccct 53667679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 55090241 - 55090306
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctatatt 84  Q
    ||||||| ||| ||||||||||||||||||||||||||   |||||| ||||||||||||| ||||    
T  55090241 tattttacaggggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccctttatt 55090306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 52491620 - 52491572
Alignment:
Q  33 gaaaacaaaaaatgacctatattacat--ggtaaatcaccattaaccct 79  Q
    |||||||||||||||||||||||||||  |||||| |||||||||||||    
T  52491620 gaaaacaaaaaatgacctatattacatggggtaaaacaccattaaccct 52491572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 40066765 - 40066706
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||| ||| ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  40066765 tattttacaggggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 40066706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 54012404 - 54012357
Alignment:
Q  34 aaaacaaaaaatgacctatattacat--ggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||  |||||| |||||||||||||    
T  54012404 aaaacaaaaaatgacctatattacatggggtaaaacaccattaaccct 54012357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 1421535 - 1421597
Alignment:
Q  21 tattttataggag-aaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||| ||||| |||||||||||||||||||||||||   |||| ||||||||||||||||    
T  1421535 tattttacaggaggaaaacaaaaaatgacctatattacagggggtacatcaccattaacccta 1421597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 13003906 - 13003955
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca---tggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||    
T  13003906 gaaaacaaaaaatgacctatattacaagggggtaaatcaccattaaccct 13003955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 21549991 - 21550041
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctat 81  Q
    ||||||||||||||||||||||||||   |||||| |||||||||||||||    
T  21549991 gaaaacaaaaaatgacctatattacaggcggtaaagcaccattaaccctat 21550041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 3820541 - 3820492
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  3820541 gaaaacaaaaaatgacctatattacagggggtaaaacaccattaacccta 3820492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 3841240 - 3841179
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||| ||| |||||| |||||||||||||||||||  |||||||  |||||||||||||    
T  3841240 tattttacaggggaaaaccaaaaatgacctatattacaggtggtaaagaaccattaacccta 3841179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 24286383 - 24286447
Alignment:
Q  21 tattttatag-gagaaaacaaaaaatgacctatattaca---tggtaaatcaccattaaccctat 81  Q
    |||||||||| ||||||||||||||||| ||||||||||    |||||| |||||||||||||||    
T  24286383 tattttatagtgagaaaacaaaaaatgatctatattacaggggggtaaaacaccattaaccctat 24286447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 31341451 - 31341500
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  31341451 gaaaacaaaaaatgacctatattacaggaggtaaagcaccattaacccta 31341500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 53523439 - 53523386
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccctatatt 84  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||| ||||    
T  53523439 gaaaacaaaaaatgacctatattacaagaggtaaagcaccattaaccctttatt 53523386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 31341285 - 31341225
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattacatgg--taaatcaccattaaccct 79  Q
    ||||||| ||| | |||||||||||||||||||||||| ||  |||| |||||||||||||    
T  31341285 tattttacagggggaaacaaaaaatgacctatattacaggggataaagcaccattaaccct 31341225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 44986750 - 44986798
Alignment:
Q  32 agaaaacaaaaaatgacctatattacatgg--taaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||| ||  |||| ||||||||||||    
T  44986750 agaaaacaaaaaatgacctatattacaggggataaaacaccattaaccc 44986798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 51460769 - 51460798
Alignment:
Q  29 aggagaaaacaaaaaatgacctatattaca 58  Q
    ||||||||||||||||||||||||||||||    
T  51460769 aggagaaaacaaaaaatgacctatattaca 51460798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 54087741 - 54087789
Alignment:
Q  34 aaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    |||||||||||||||||||||||||   |||||| ||||||||||||||    
T  54087741 aaaacaaaaaatgacctatattacagggggtaaaacaccattaacccta 54087789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 17342891 - 17342863
Alignment:
Q  30 ggagaaaacaaaaaatgacctatattaca 58  Q
    |||||||||||||||||||||||||||||    
T  17342891 ggagaaaacaaaaaatgacctatattaca 17342863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 25924089 - 25924039
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca---tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||    |||||| ||||||||||||||    
T  25924089 gaaaacaaaaaatgacctatattacaggggggtaaagcaccattaacccta 25924039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 33898124 - 33898073
Alignment:
Q  29 aggagaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||| ||||||||||||||||||||||||   |||||| ||||||||||||    
T  33898124 aggaggaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 33898073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 35359640 - 35359700
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca-tggtaaatcaccattaacccta 80  Q
    ||||||| |||  ||||| |||||||||||||||||||  |||||| ||||||||||||||    
T  35359640 tattttacagggaaaaaccaaaaatgacctatattacaggggtaaaacaccattaacccta 35359700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 41747354 - 41747304
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca---tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||    |||||| ||||||||||||||    
T  41747354 gaaaacaaaaaatgacctatattacaggggggtaaagcaccattaacccta 41747304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 45333896 - 45333846
Alignment:
Q  33 gaaaacaaaaaatgacctatattac---atggtaaatcaccattaacccta 80  Q
    |||||||||||||||||||||||||   | |||||| ||||||||||||||    
T  45333896 gaaaacaaaaaatgacctatattacaggagggtaaaacaccattaacccta 45333846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 48418871 - 48418919
Alignment:
Q  33 gaaaacaaaaaatgacctatattac-atggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||| | |||||| ||||||| ||||||    
T  48418871 gaaaacaaaaaatgacctatattacaagggtaaaacaccattgacccta 48418919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 23564161 - 23564100
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||| ||| ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  23564161 tattttacaggggaaaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 23564100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 43585411 - 43585368
Alignment:
Q  34 aaaacaaaaaatgacctatattacatggtaaatcaccattaacc 77  Q
    ||||||||||||||||||||||||  |||||| |||||||||||    
T  43585411 aaaacaaaaaatgacctatattacggggtaaaacaccattaacc 43585368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 3448882 - 3448935
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatgg--taaatcaccattaaccctatatt 84  Q
    |||||||||||||||||||||||||| ||  |||| ||||||||||| ||||||    
T  3448882 gaaaacaaaaaatgacctatattacaggggataaaacaccattaaccttatatt 3448935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 23566136 - 23566182
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca-tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||    
T  23566136 gaaaacaaaaaatgacctatattacaggggtaaagcaccattaaccc 23566182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 31343412 - 31343356
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatgg---taaatcaccattaaccctatattct 86  Q
    |||||| ||||||||||||||||||| ||   |||| ||||||||||||||||||||    
T  31343412 gaaaaccaaaaatgacctatattacaggggggtaaagcaccattaaccctatattct 31343356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 38687521 - 38687570
Alignment:
Q  33 gaaaacaaaaaatgacctatattacatgg--taaatcaccattaacccta 80  Q
    |||||||||||||||||||||||||| ||  |||| ||||||||||||||    
T  38687521 gaaaacaaaaaatgacctatattacaggggataaaacaccattaacccta 38687570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 4105286 - 4105315
Alignment:
Q  29 aggagaaaacaaaaaatgacctatattaca 58  Q
    ||||||||||||||||||||||||||||||    
T  4105286 aggagaaaacaaaaaatgacctatattaca 4105315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 22686789 - 22686741
Alignment:
Q  34 aaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    |||||||||||||||||||||||||   |||||| ||||||||||||||    
T  22686789 aaaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 22686741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 23565941 - 23565893
Alignment:
Q  33 gaaaacaaaaaatgacctatattac--atggtaaatcaccattaaccct 79  Q
    |||||||||||||||||||||||||  | |||||| |||||||||||||    
T  23565941 gaaaacaaaaaatgacctatattacagagggtaaagcaccattaaccct 23565893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 38132072 - 38132120
Alignment:
Q  34 aaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    |||||||||||||||||||||||||   |||||| ||||||||||||||    
T  38132072 aaaacaaaaaatgacctatattacagggggtaaaacaccattaacccta 38132120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 3785572 - 3785525
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  3785572 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 3785525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 5160509 - 5160559
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca---tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||    |||||| ||||||||||||||    
T  5160509 gaaaacaaaaaatgacctatattacaggggggtaaagcaccattaacccta 5160559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 11961115 - 11961162
Alignment:
Q  35 aaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||    
T  11961115 aaacaaaaaatgacctatattacagggggtaaaccaccattaacccta 11961162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 16093667 - 16093631
Alignment:
Q  22 attttataggagaaaacaaaaaatgacctatattaca 58  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  16093667 attttacaggggaaaacaaaaaatgacctatattaca 16093631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 29346323 - 29346359
Alignment:
Q  21 tattttataggagaaaacaaaaaatgacctatattac 57  Q
    ||||||||| | |||||||||||||||||||||||||    
T  29346323 tattttatacgggaaaacaaaaaatgacctatattac 29346359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 39302125 - 39302173
Alignment:
Q  32 agaaaacaaaaaatgacctatattaca-tggtaaatcaccattaaccct 79  Q
    |||||| ||||||||||||||||||||  |||||| |||||||||||||    
T  39302125 agaaaataaaaaatgacctatattacaggggtaaaacaccattaaccct 39302173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 40770588 - 40770552
Alignment:
Q  22 attttataggagaaaacaaaaaatgacctatattaca 58  Q
    |||||||||| |||||| |||||||||||||||||||    
T  40770588 attttataggggaaaaccaaaaatgacctatattaca 40770552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 1309833 - 1309785
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  1309833 gaaaacaaaaaatgacctatattacagggggtaaatcaccattaaccct 1309785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 1310078 - 1310130
Alignment:
Q  30 ggagaaaacaaaaaatgacctatattacatg---gtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||||| |   ||||| |||||||||||||    
T  1310078 ggagaaaacaaaaaatgacctatattacaggggagtaaagcaccattaaccct 1310130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 24602477 - 24602428
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  24602477 gaaaacaaaaaatgacctatattacaaggggtaaagcaccattaacccta 24602428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 10790341 - 10790390
Alignment:
Q  30 ggagaaaacaaaaaatgacctatattaca-tggtaaatcaccattaaccc 78  Q
    |||||||| ||||||||||||||||||||  |||||| ||||||||||||    
T  10790341 ggagaaaataaaaaatgacctatattacaggggtaaagcaccattaaccc 10790390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 25567749 - 25567701
Alignment:
Q  33 gaaaacaaaaaatgacctatattacat--ggtaaatcaccattaaccct 79  Q
    |||||| ||||||||||||||||||||  |||||| |||||||||||||    
T  25567749 gaaaaccaaaaatgacctatattacatagggtaaagcaccattaaccct 25567701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 31826417 - 31826468
Alignment:
Q  34 aaaacaaaaaatgacctatattaca---tggtaaatcaccattaaccctata 82  Q
    |||||||||||||||||||||||||    |||||| ||||||||||||||||    
T  31826417 aaaacaaaaaatgacctatattacaggggggtaaaacaccattaaccctata 31826468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 33552777 - 33552829
Alignment:
Q  30 ggagaaaacaaaaaatgacctatattacatgg--taaatcaccattaacccta 80  Q
    |||||||| |||||||||||||||||||| ||  |||| ||||||||||||||    
T  33552777 ggagaaaataaaaaatgacctatattacaggggataaaacaccattaacccta 33552829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 2181364 - 2181317
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  2181364 gaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccc 2181317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 7017308 - 7017355
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  7017308 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 7017355  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 7313498 - 7313451
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  7313498 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 7313451  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 10366449 - 10366399
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca---tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||    |||||| ||||||||||||||    
T  10366449 gaaaacaaaaaatgacctatattacaggggggtaaagcaccattaacccta 10366399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 11336701 - 11336651
Alignment:
Q  34 aaaacaaaaaatgacctatattaca---tggtaaatcaccattaaccctat 81  Q
    |||||||||||||||||||||||||    |||||| |||||||||||||||    
T  11336701 aaaacaaaaaatgacctatattacaagggggtaaaacaccattaaccctat 11336651  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 15959602 - 15959649
Alignment:
Q  32 agaaaacaaaaaatgacctatattaca--tggtaaatcaccattaacc 77  Q
    |||||||||||||||||||||||||||   |||||| |||||||||||    
T  15959602 agaaaacaaaaaatgacctatattacagggggtaaaacaccattaacc 15959649  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 19376125 - 19376065
Alignment:
Q  21 tattttataggag-aaaacaaaaaatgacctatattaca-tggtaaatcaccattaaccct 79  Q
    ||||||||||| | ||||| |||||||||||||||||||  |||||| |||||||||||||    
T  19376125 tattttatagggggaaaaccaaaaatgacctatattacaggggtaaagcaccattaaccct 19376065  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 21604364 - 21604414
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca---tggtaaatcaccattaacccta 80  Q
    ||||||||||||||||||||||||||    |||||| ||||||||||||||    
T  21604364 gaaaacaaaaaatgacctatattacaggggggtaaagcaccattaacccta 21604414  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 33225600 - 33225643
Alignment:
Q  34 aaaacaaaaaatgacctatattaca--tggtaaatcaccattaa 75  Q
    |||||||||||||||||||||||||   ||||||||||||||||    
T  33225600 aaaacaaaaaatgacctatattacagggggtaaatcaccattaa 33225643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 33352625 - 33352672
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||    
T  33352625 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 33352672  T

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Target: scaffold0334 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 4311 - 4357
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca-tggtaaatcaccattaaccc 78  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||    
T  4311 gaaaacaaaaaatgacctatattacaggggtaaagcaccattaaccc 4357  T

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Target: scaffold0334; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 4131 - 4071
Alignment:
Q  21 tattttataggag-aaaacaaaaaatgacctatattacatgg-taaatcaccattaaccct 79  Q
    ||||||| ||||| ||||| ||||||||| ||||||||| || ||||||||||||||||||    
T  4131 tattttacaggaggaaaaccaaaaatgacttatattacaggggtaaatcaccattaaccct 4071  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 263263 - 263225
Alignment:
Q  21 tattttatagg-agaaaacaaaaaatgacctatattaca 58  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  263263 tattttatagggagaaaacaaaaaatgacctatattaca 263225  T

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Target: scaffold0111 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 29693 - 29741
Alignment:
Q  33 gaaaacaaaaaatgacctatattaca--tggtaaatcaccattaaccct 79  Q
    ||||||||||||||||||||||||||   |||||| |||||||||||||    
T  29693 gaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccct 29741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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